LOCUS       NM_001034894            3208 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus forkhead box R2 (Foxr2), mRNA.
ACCESSION   NM_001034894 XM_488391
VERSION     NM_001034894.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3208)
  AUTHORS   Poh,B., Koso,H., Momota,H., Komori,T., Suzuki,Y., Yoshida,N.,
            Ino,Y., Todo,T. and Watanabe,S.
  TITLE     Foxr2 promotes formation of CNS-embryonal tumors in a
            Trp53-deficient background
  JOURNAL   Neuro Oncol 21 (8), 993-1004 (2019)
   PUBMED   30976792
  REMARK    GeneRIF: Foxr2 promotes formation of CNS-embryonal tumors in a
            Trp53-deficient background.
REFERENCE   2  (bases 1 to 3208)
  AUTHORS   Katoh,M. and Katoh,M.
  TITLE     Identification and characterization of human FOXN6, mouse Foxn6,
            and rat Foxn6 genes in silico
  JOURNAL   Int J Oncol 25 (1), 219-223 (2004)
   PUBMED   15202009
  REMARK    GeneRIF: FOXN6 gene was identified within genome sequence
            RP23-180D16 (FOXN6)
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL672293.14.
            
            On May 22, 2009 this sequence version replaced NM_001034894.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK145057.1, ERR2680377.968176.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164134
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-63                AL672293.14        37948-38010
            64-139              AL672293.14        38175-38250
            140-183             AL672293.14        46060-46103
            184-3208            AL672293.14        48997-52021
FEATURES             Location/Qualifiers
     source          1..3208
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 68.46 cM"
     gene            1..3208
                     /gene="Foxr2"
                     /gene_synonym="EG436240; Foxn6"
                     /note="forkhead box R2"
                     /db_xref="GeneID:436240"
                     /db_xref="MGI:MGI:3511682"
     exon            1..63
                     /gene="Foxr2"
                     /gene_synonym="EG436240; Foxn6"
                     /inference="alignment:Splign:2.1.0"
     exon            64..139
                     /gene="Foxr2"
                     /gene_synonym="EG436240; Foxn6"
                     /inference="alignment:Splign:2.1.0"
     exon            140..183
                     /gene="Foxr2"
                     /gene_synonym="EG436240; Foxn6"
                     /inference="alignment:Splign:2.1.0"
     exon            184..3208
                     /gene="Foxr2"
                     /gene_synonym="EG436240; Foxn6"
                     /inference="alignment:Splign:2.1.0"
     CDS             482..1390
                     /gene="Foxr2"
                     /gene_synonym="EG436240; Foxn6"
                     /note="forkhead box protein N6"
                     /codon_start=1
                     /product="forkhead box protein R2"
                     /protein_id="NP_001030066.1"
                     /db_xref="CCDS:CCDS30479.1"
                     /db_xref="GeneID:436240"
                     /db_xref="MGI:MGI:3511682"
                     /translation="MDVKVKNRDFWYSLHGQVPGMLDWDMGNEFFLPCTMDQCSFAEQ
                     SLAKYKIQLTKPPALPQKKKSNFDDDGPPAEPSLWMWVNPNIVCPINSKEAPNTIHKI
                     LPSAPFPQTGESDYLGTQRMVQSLSVLHTEHHQQQKLLIYSTAPDFIEEETKEQECTS
                     SKKYSKKHTVCHGPHREKESWPRPPLNYSHLVALALKSSPSCGLNVQQIYNFTRQHFP
                     YFRTAPEGWKNTIRHNLCSLTCFEKVPVDLEDEPDGKPRSFLWKLTDEGNRFFQEDTR
                     VLAYARRESIKQSMRQPELIDLLFHL"
ORIGIN      
        1 accccaactc cagcaggcac tccctgggaa cccaaaggcc attcattcct gccaggcaag
       61 cagtcattgc tttatcccag cgtctgactc cagctggcac tccctgggaa tgctcccact
      121 actctggcca aggaagcagg tttttattca actatctaga aaagacaccc aggacttgcc
      181 aagagctatc aaaacatcat ttgtgagcaa cagtaagaaa agacttggaa aaatttgaaa
      241 gcagtttttc ctaataaaat gatcgtctta gttactcttt tgagctgtgt accagaaagc
      301 tgtggcttct ctgaccagtg aagtatcagt gtcctcgtgt cagcttttcc agcaggccta
      361 ctgatagatt gcactggaga ggagacattt tgcattaaat agtgcctcag caatagcttg
      421 gcaaatttcc agagactttt atctatttgg aagtttacct tcatccatca cttcggtaaa
      481 gatggatgta aaggtaaaaa atcgggactt ctggtacagt ctccatggcc aagtccctgg
      541 gatgctggat tgggacatgg ggaatgaatt tttcctgcct tgtaccatgg atcagtgctc
      601 tttcgctgag cagagtctcg ccaaatataa aatccaactg acaaaaccac ctgcactgcc
      661 tcagaagaag aaatccaatt ttgatgatga tggtcctccc gctgaaccca gcttgtggat
      721 gtgggtgaat cccaacattg tgtgccccat caacagcaag gaggctccaa ataccattca
      781 taaaattctg ccaagtgcac cattcccaca gactggcgag tctgactact tagggaccca
      841 gagaatggta caatccctgt ctgttctcca cactgagcat catcagcaac aaaagctgct
      901 catttactcc actgcccctg atttcataga agaggagact aaggaacagg aatgtacatc
      961 ctccaagaaa tactccaaga aacacacagt gtgccatggc ccccaccggg agaaggagtc
     1021 ctggccacgc cctccactca actacagcca tctagttgct ctagcattaa aaagcagccc
     1081 ttcctgtggc ctcaatgtgc aacagatcta caattttact cgacaacatt tcccttattt
     1141 tcggacagca ccagagggct ggaaaaacac cattcgccac aacctctgct ccctgacctg
     1201 ctttgaaaag gtgccagtcg accttgaaga tgagccagat ggaaaacctc gctctttcct
     1261 ttggaagctc actgatgagg gaaaccgatt ctttcaggag gacacccgtg tcttggccta
     1321 tgctcgaagg gagagcatca aacagagcat gcgccaacca gagctgatag acctcctctt
     1381 tcatctttaa tgttttcttc ttttcttata tatgtgtggt atgtgtaagt gtgtgtatgc
     1441 atgcttgtat gtatgtgggc atacatgtgc acatgtgtgt ggaggctcaa gttgacatta
     1501 agatttttcc ctccattgct cttccacctc attcttcgag gcagggtctt tcagtgaaac
     1561 ccagagctca tagatactgt gagtctcact agccagcttg ctctcaggat cccctgtctg
     1621 tgcatgcatt ccaaggctga gattgtaggc aggtcctcat gcccacccag tttggttttg
     1681 gggatctgaa tgcaggtcct cttgcttgca tggcaggcac tttaactgct gagccatctc
     1741 cccagcctcc tctttcattt ttgaaagaca actgctcact ttctggaaca ctgccctgct
     1801 taccgtgctg aattaacttt cactcatccg taatcctgtt tggcgccaag cctgtcttta
     1861 gctaccgtta agtagtcaga ggtgactaca ggggaggcag agattaaatc cagatgtaga
     1921 atgatggaaa gttatacaac agctgcaatt cttctacact ttgaacagag acagaaagtc
     1981 ttaggaacca tggcaagcaa tctaaggata gaagagtatg ttacatctat tggagcaaac
     2041 ttgaaatata aaggacgaat atgaaataaa cccaggatat gggcaacctt catatgccat
     2101 gtgaaggtat atgtgtataa agtgaactaa gtttgatgtt taaagtatgg agactcaaat
     2161 acgcccctct accattcatc ttttgcatct tcttttgaag tgacccattg tattcatcag
     2221 agcctcactt ttctttctag tcctagactt aagagctttg ttctattgct atccaattcc
     2281 agcaatgaca aatgcaggca gctgttattt gtttgaatat tgaaagtcct tacattgatt
     2341 gtgtattaac actaagcttt ttgatgacaa tgcattggtg ctcatttgtg tttttcacca
     2401 aacgttattt gaggaactgt aaggttcatc ttaggtgtta aaagatagaa agcaaacaca
     2461 tatttgtaag gcatcgatat ttatctgtga taaaacagag gtgcgaagtt gccatggaaa
     2521 tggtgagaca tccttcctgg aaacaggaaa gcattaaaaa tgaagtgcct tttgagctag
     2581 atttgaagaa caaataggaa tttgctgagc acataagctg agaagaaaca ttatacgggg
     2641 gacagtgtga atagcattaa ccaggtgttt gatgcattct aggaagacag ctacacaagg
     2701 gtcaggagcc actgtaagaa aggtaaccaa actgctttta agttgtgctt acatgttaac
     2761 taatagacat aatttgtgca ttgctaaaaa gcacaaacaa aataccaaca taacaaatgt
     2821 ttcagccttc ggctttctaa ttttaaaatt tacttttttt gtagacacta agttcatgaa
     2881 atgtaaagat agtttttgtc ttttgtctta attcattttt aaatgtatac caatacttag
     2941 tatgttaagt atgtgtttag ttgccaagca ttcaatgaga gtataatatg tgtaccatac
     3001 aaaagcagct aatttaatat gatcacaaca agggagacct tactttttaa tggcttatta
     3061 cagcagatac aaaactgttt atgtttaatt gcaaaggctg cataattcag caaagtcatt
     3121 tccaaaagta attgtaaatg tcatttctgc atcatagtta ctttgaaaat gttgacaaaa
     3181 cagtctggaa ttaataaaat tttctacc
//
