LOCUS       NM_001033469            1666 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus forkhead box R1 (Foxr1), mRNA.
ACCESSION   NM_001033469 XM_356153 XM_916700
VERSION     NM_001033469.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1666)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1666)
  AUTHORS   Mota,A., Waxman,H.K., Hong,R., Lagani,G.D., Niu,S.Y.,
            Bertherat,F.L., Wolfe,L., Malicdan,C.M., Markello,T.C., Adams,D.R.,
            Gahl,W.A., Cheng,C.S., Beffert,U. and Ho,A.
  TITLE     FOXR1 regulates stress response pathways and is necessary for
            proper brain development
  JOURNAL   PLoS Genet 17 (11), e1009854 (2021)
   PUBMED   34723967
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1666)
  AUTHORS   Katoh,M. and Katoh,M.
  TITLE     Germ-line mutation of Foxn5 gene in mouse lineage
  JOURNAL   Int J Mol Med 14 (3), 463-467 (2004)
   PUBMED   15289901
  REMARK    GeneRIF: Foxn5 was identified and characterized as a germ-line
            mutation.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK139562.1.
            
            [WARNING] On Feb 13, 2025 this sequence was replaced by
            NM_001033469.3.
            
            On Apr 6, 2007 this sequence version replaced NM_001033469.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK139562.1, BY725391.1 [ECO:0000332]
            RNAseq introns              :: partial sample support SAMN00849374,
                                           SAMN00849383 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1666              AK139562.1         1-1666
FEATURES             Location/Qualifiers
     source          1..1666
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 24.84 cM"
     gene            1..1666
                     /gene="Foxr1"
                     /gene_synonym="Foxn5; Gm1115"
                     /note="forkhead box R1"
                     /db_xref="GeneID:382074"
                     /db_xref="MGI:MGI:2685961"
     exon            1..112
                     /gene="Foxr1"
                     /gene_synonym="Foxn5; Gm1115"
                     /inference="alignment:Splign:2.1.0"
     CDS             52..723
                     /gene="Foxr1"
                     /gene_synonym="Foxn5; Gm1115"
                     /note="forkhead box protein N5"
                     /codon_start=1
                     /product="forkhead box protein R1"
                     /protein_id="NP_001028641.1"
                     /db_xref="CCDS:CCDS23111.1"
                     /db_xref="GeneID:382074"
                     /db_xref="MGI:MGI:2685961"
                     /translation="MGNECFLTFTTTHLSEAEQKLALYRLQLVEPPKLPLEKKTNPDK
                     DGPDIKPNLWMWVNPNMVYPPGKLEVAVKEEDQSALSAFQPALKEEEDSCSEASEVQQ
                     PLPPCRQKRKQRRSTVPLPLAPGRRAPLENPWRLPQAISPEGRLWSRPPLHYFHLIAL
                     ALRNSPPCGLSVQQIYSFTRQNICLLSAQEHNHSYPFATYNPAVPQIPILLGRYSFSY
                     PVPKD"
     exon            113..187
                     /gene="Foxr1"
                     /gene_synonym="Foxn5; Gm1115"
                     /inference="alignment:Splign:2.1.0"
     exon            188..431
                     /gene="Foxr1"
                     /gene_synonym="Foxn5; Gm1115"
                     /inference="alignment:Splign:2.1.0"
     exon            432..590
                     /gene="Foxr1"
                     /gene_synonym="Foxn5; Gm1115"
                     /inference="alignment:Splign:2.1.0"
     exon            591..1666
                     /gene="Foxr1"
                     /gene_synonym="Foxn5; Gm1115"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aacttctggg ccagcctcca tggccaggtt ccgggcttgc tggattggga tatgggcaac
       61 gagtgcttct tgaccttcac cacgacacac ttgtccgagg ccgagcagaa acttgccctg
      121 tacagactcc aacttgttga accaccaaaa ctgcctttgg aaaaaaaaac caaccctgat
      181 aaagatggtc cagacattaa gcccaatctg tggatgtggg tgaacccaaa catggtgtat
      241 cctcccggca agctggaggt cgcagtgaaa gaggaagacc agagtgcgct gtctgccttc
      301 cagccagccc tgaaagagga agaagacagc tgttcagaag cttcggaggt acagcagcca
      361 ttgcctcctt gcaggcagaa gaggaagcag aggagaagca cagtgcctct tcccctagca
      421 cctgggagga gggctccact cgagaatccg tggaggcttc cgcaagccat cagcccagag
      481 gggaggctct ggtcccggcc ccctctccat tacttccatc tgattgcctt ggcactcaga
      541 aacagtcccc cctgtggcct cagtgtacag cagatctaca gtttcactcg gcaaaatata
      601 tgcctactca gcgctcaaga acataaccac tcctacccct tcgccactta caatccagct
      661 gtccctcaaa taccaattct cctgggtcgt tacagtttct cctaccctgt ccccaaagat
      721 tagccagaat agaatccagc atcccccaaa acatctccgc tttctgcccc ttagactgtc
      781 ctgcctggca cagaaccttg tacctccaag ggtcatggaa gcctcactga gaatttgcat
      841 tgtgtgtgtc tctgtgtgtt gtgtgatcat tgaacttagg gcctcttttt ttgagacaag
      901 gactcacttt gtagctcagg ctgacttgaa tctcactgta tagactggac tagccttgaa
      961 ttcagagacc ttccttgcca ctgcctccca agtgacaggg tttctgtgtg tagcgctggc
     1021 tgtcctagaa ctcactatgc aaaccaggct gccttcaaaa tcagagatct acctgcctct
     1081 gtctcttgag tggtggaatt aaggatgcgc taccatgacc ggctaacctt tcgctttgat
     1141 agtcatacat aagtgtgagg gaggtcttcc ctggtatcag acaaagagcc ccgtgtctca
     1201 gagtgtttat cttgggtggt ttaatcctat tcttggttct gctttgttcc cactgtcaaa
     1261 atctccagcc ctcgagcgag gggcgaaaat gagactgaga ctggggatat tatactgggc
     1321 ttagaagaag acgtttctca gccctagcat ggtggtgcag gcctgtgatc ccagcactca
     1381 ggattcagag gtaggaggag ggccaggggt ttaaggtcat cctcagctgc tcagtgagtt
     1441 cacggtcagt ctgggctaca ttagactgtc tcaaagatgg aaagaaggaa aaagaaaaac
     1501 gatggttcgg gctggcaaga tggctcagtg gttaagagcg ccaactgctc ttccgaaggt
     1561 cctgagttca aatcccagca accacatggt ggctcacaac caccagtaat gaggtctgct
     1621 gccctcttct ggtgtttctg aagtcagcta cagtgtactt acatat
//
