LOCUS       XM_006516239            7856 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus forkhead box N3 (Foxn3), transcript variant
            X12, mRNA.
ACCESSION   XM_006516239
VERSION     XM_006516239.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000078.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_006516239.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7856
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="12"
     gene            1..7856
                     /gene="Foxn3"
                     /gene_synonym="5430426H20Rik; Ches1; Ches1l; HTLFL1"
                     /note="forkhead box N3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 6 mRNAs, 12 ESTs, 4105
                     long SRA reads, 5 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     50 samples with support for all annotated introns"
                     /db_xref="GeneID:71375"
                     /db_xref="MGI:MGI:1918625"
     CDS             297..1670
                     /gene="Foxn3"
                     /gene_synonym="5430426H20Rik; Ches1; Ches1l; HTLFL1"
                     /codon_start=1
                     /product="forkhead box protein N3 isoform X3"
                     /protein_id="XP_006516302.1"
                     /db_xref="GeneID:71375"
                     /db_xref="MGI:MGI:1918625"
                     /translation="MGPVMPASKKAESSGISVSSGLSQRYRGSGFSKALQEDDDLDFP
                     LPDIRLEEGAMEDEELTNLNWLHESKNLLKSFGESVLRSVSPVQDLDDDTPPSPAHSD
                     MPYDARQNPNCKPPYSFSCLIFMAIEDSPTKRLPVKDIYNWILEHFPYFANAPTGWKN
                     SVRHNLSLNKCFKKVDKERSQSIGKGSLWCIDPEYRQNLIQALKKTPYHPPPTPQAYQ
                     STSGPPIWPGSTFFKRNGALLQVSPGVIQNGARVLSRGLFPGVRPLPITPIGMTAAIR
                     NSITSCRMRTESEPPCGSPVVSGDPKEDHNYSSAKSSTARSTSPTSDSISSSSSSADD
                     HYEFATKGSQEGSEGSFQSHESHSEPEEEDRKPSPKEGKDALGDSGYASQHKKRQHFA
                     KARKVPSDTLPLKKRRTEKPPESDDEEMKEAAGSLLHLAGIRSCLNNITNRTAKGQKE
                     QKETAKN"
ORIGIN      
        1 aggactccgg gcccgggtgg gagccgagcc gccgaccccg ggcaggcgcc gggcgctgga
       61 gccgggtgtt ccggccgcgg tcggtgcagc tcggctggga gacggcgcga gccggcggcg
      121 gggccccccg cgagtccagc gccgccgcag ccccccaatg cggccgcgag aagcagctgg
      181 ggggcaggcg atcgaagcag cctctggaag tgtcgcctag tgattatgaa gacacctttg
      241 tcctttctgg agcgatgctg acctggaccc attctgactc aggagccttc acgtaaatgg
      301 gtccagtcat gcctgccagt aagaaggccg agagctcagg aatcagtgtg tccagtggac
      361 tgagtcagcg ttaccggggc agcggtttct ccaaggccct ccaggaagac gatgatcttg
      421 acttccctct gcccgacatc cgattagaag agggggccat ggaagatgaa gagctgacca
      481 acctgaactg gctgcatgag agcaagaact tgctgaagag ctttggggag tcggtcctta
      541 ggagtgtcag tcctgtgcag gacctagacg atgacacccc accatcccct gcccactcgg
      601 acatgcccta tgatgccagg cagaacccca actgcaagcc cccctactcc tttagctgcc
      661 tcatatttat ggccatcgag gactctccga ccaagcgcct tccagtgaag gacatctaca
      721 actggatctt agaacatttc ccgtattttg caaatgcacc tactgggtgg aagaactcag
      781 tgagacacaa cttgtcattg aataagtgtt tcaagaaagt ggacaaagag aggagtcaga
      841 gtattgggaa agggtcattg tggtgcatcg acccagagta tagacaaaat ctaattcagg
      901 ctctgaaaaa gacaccttac cacccacctc ctactcctca ggcttatcaa agcacatcag
      961 gtccacccat ctggccgggc agtaccttct tcaagagaaa cggagccctc ctgcaagttt
     1021 ctccaggagt gatacaaaat ggagcgaggg ttctgagtcg agggctgttt cctggtgtcc
     1081 ggccgttacc aatcactccc attgggatga cggcagccat aaggaatagc atcaccagtt
     1141 gcaggatgcg gactgagagc gagcccccat gtggctcccc agtggtcagt ggcgatccga
     1201 aggaggacca caactacagt agtgccaagt cctccactgc ccggagcacc tctcccacca
     1261 gcgactccat ctcctcttcc tcctcctcag ccgacgacca ctatgagttt gctacgaagg
     1321 ggagccagga gggcagtgag ggaagcttcc agagccatga gagccacagt gaaccagagg
     1381 aggaggaccg gaaacccagc ccgaaggaag gcaaggatgc cctgggggac agcggatacg
     1441 catcccagca caagaagcgc cagcacttcg ccaaggccag gaaggtcccc agcgacacac
     1501 tgcccctcaa aaagagacgc acggagaagc cgcccgagag cgatgacgag gagatgaagg
     1561 aggcggccgg ttcactcctg cacttagcag ggattcggtc ctgtttgaac aacatcacca
     1621 atcggacggc caaggggcag aaagaacaaa aggaaaccgc aaaaaattga aacaagtctc
     1681 tgatttgttt tgaacttatg gccatttggt ttcagcatgt caggagattt ctaatgattt
     1741 gtggcaatat cagcaatttt tttctttttt cttttttttt ttttcttttt tccttttgtt
     1801 ggtttggttt tcttttcttt ctttctttct ttcttttgtt ttttaatttg ccccccactc
     1861 ctttgttttt ggacccttaa aattttttct gtttaaagga gattgaagcc atagaaactc
     1921 atattgacac tcagccgttt tacaaaagct tttctttatc tgaatacaaa aaccgaaagg
     1981 aaaaaaaaaa aagccaaaat taaccattgc ttcctgcagc ctgtcagaaa cctgtggcta
     2041 aacccacagg gctgtccatg ttaatgccac aggaacatgg agcaccacct aggaggcaca
     2101 cacgcacaca gagtcagtcg tcactgctca gcccaaccct taggtttaag aagtcagttg
     2161 tgtttggagt gaggctggga agcagttaca gagactgaag agcccttgtc ccctagagga
     2221 taaccccatg ctctggccct ggcatcccaa ggtaccacaa atgccatcgg ccttgctgtg
     2281 tggcaagccc agggcctggc tgccagtcct ctgtgtttct tagccttgag cctggtaaca
     2341 tctcccaggc tgaataccag actgttcagg tgtattaggt gtcagtgact gaggagggaa
     2401 aacagggatc gtcagagcca ttgataacca ctgagttctg ctctatgtta aattaagaag
     2461 acttccaaag ccataagcct gaaggttggt cctgtgtgtg tgtgtgtgtg tatgtgtgtg
     2521 cgcgtgcatg tgcacacaaa cacacaactt aaaggtgatg cagaaaatag gctgtgccct
     2581 cttaactgcc caaggaaaag caatcatgcc caagaaatga cagtagctgt taagaaaaat
     2641 ggtacagatt tttttcctcc taaataaata atctgaccca agttgggagg gggggtgcta
     2701 cggaaactgc cattagtatt atggtgtctt tatgagatta aaggcacatt gatggactca
     2761 acaaagcaaa aacatgacaa acaatacaac tcctgtactg tcctcaaaaa gggtttgcaa
     2821 ttaatatcag tactcatttt tgcaacaaag aaaaacagaa cagatcagtg actttcacat
     2881 tcagccagtg tagccagcag aaatttctga tccacaaatg catggattcc tttgaagaaa
     2941 aagaaaaaaa aaaaaaagaa aaaggaaaaa aaaatcacaa aaacaaactt ttttttattc
     3001 aaaaataaca aagttcttgt aaggtaaata atgtatttag catgaagcat gaattatttt
     3061 catataaata tagagaatag agagaagact atgcctctaa cttttaagcc ctaaagctta
     3121 gaggcccttt gttctttttc tttctttctt tttccttttc cttttttttc cttttttttt
     3181 tttttttgtt attattattt tgtttttttg ttttttttga agcaggtgtt taaggtttaa
     3241 ccttcttcag ggacaaattc tgactgttgg ggaacttact ctgcaatata aattatcttc
     3301 atgctctggt aggggcttgg atggttgagc tctgtactgc cttgtctgca ctcagccccg
     3361 accccctctg attctctact gaagagtgtg tccttcccta tgtctgtatg tgtttaacac
     3421 gacgcaataa ttcgagggca aacttagtgt gtacgataga ctcgagagag ttatgggacg
     3481 cttacttgag gaaaatcctt accgtgatct ggttctagga aaaaggcagt gaataattat
     3541 gcaaattcgc cagaagaagg ggaaacacgc taatgggcct tactgggtga gggtaagaaa
     3601 tgggtacatg ggttggagga agtacgccat caaggggttg gatggagcag ccccgagcga
     3661 gcgagcgagc gttctactgt gacagtgtga ttgcgcagtg aggagggggc tggccatctc
     3721 tgccacttcg gcacagtaac caccttggga ctaagaccac ctagatagtg agagctgaac
     3781 aacaaccaga ccatgtcaca caagccagaa actccagtta cctttgccaa aaaaaaaaaa
     3841 aaaaaaaaaa ggaaaaaaga aagttttttc cttgaggtct aaacgagaaa tccctaaaac
     3901 aatatggcct cccgtccaaa tggagggaac atttaaaaac aaaatcacta ccgtggctca
     3961 gggtcagata tttggaagag agaggaaagt aaagtgacct tgaactcttg aaacagggca
     4021 gtggtgggcc tttaaagctg tgtccacctg tcagtaccag gtaccatggc aacggcggca
     4081 gccacttccc cctacctaac ctgagggcag cttttgggtg ggaggggggc acccactcta
     4141 gggcaggcta gatttacccg cagcctgggc tctctcagcg tgagggttcg gggttagatg
     4201 agagcacggg tgtgttctcc acaaacctct ggcacccaac aagccatcca cagctctgga
     4261 accctgagcc acgctttggt ttctgctgtc aacttaccaa gtccaaaaga ttccccaccc
     4321 ccacccccac cccaccccca agatgttcaa actcagacct gaaggtaaag gtaagcactc
     4381 agcactgttt gtggcagggg gcttcttccg atgcaaaccc cacacggctg tctcccctcg
     4441 gttcattttt tctgaagggg cagaggcccc tttcagaggt gacaagatgc agtgtgtgtg
     4501 tgtgatttac ttttctgatc tcgtggagat ctggagaact atcttataca agtgtgttct
     4561 gaaccgcaga accactccgt ttgcataaat acctcaccgg gcagctttct aagtgttatt
     4621 ttcctgagcc tcccttggca ccttcgttgg aattttctgg aagacttgtt ggggaaactt
     4681 tagtaagggt actgttttct attttccttc tgttttgggc ggcatacgca ttatgcataa
     4741 ccaaaacaat ggctcaattg tgtttaactc tgtattttga ctgttgaggc gaaaaacaaa
     4801 gtcatcaatg tgtatgtggc tgtttgtagc gaagtctgcc gaatgaggct gtccgtgtcc
     4861 ttaacaagcc aaggggcagg aggcaccctc tctttcccct cccccaagag cagtagagaa
     4921 tttaagcaca agcctatttg tgaaagaata ttttgcttaa gtgtaattca ctttagtgtt
     4981 ggacttcctt cccaaatgtc aggtgttctt ttagctttca aactagcctg tgtatccatt
     5041 agtctgacag atcgcctgag catcattaaa gggatgtggt ggggttttgt ttttggtttt
     5101 gtttttttgg ttttttcctt gcatttctcc tgtggggaga agtggcgggt taatgtgtca
     5161 ttccagtatc tcacggactc acatggggtg gggggagggg caagtgggga actatagcaa
     5221 tatctgcaga tgctttgggg acacatagca ccgcgacata acaactgccg gctgtcagcc
     5281 ctcagacaca gttaagagaa gagagagact cactctcttt tcttaggtga tgctcacatc
     5341 cacgtgtttt accccgctcc tgacagtctt tcctcattct ctagtacttt tttggagaaa
     5401 gggtctgcac cgtacttagg ttttctttct aatatacatc accaagctcc tacttccctc
     5461 tgcatctcca gtcagtatgt tttttttttt ttttcaggag ttcttttagt aaagctggct
     5521 ctctgaatct aaagctgaac caaaaccaca cacagattgt ggcataagga actcgtggtc
     5581 aggatgactg gggcaggtct ccatcttggg gccacgtctt tcaaggaggg atgggttggc
     5641 gccctttccc aagagcgggt ttttcctgta gtcgctagcc tgtctattgc ctcctgttca
     5701 gagcagttcc gaccacggag ctttcttgaa ggacgattgc attctgtggc gcccgagcca
     5761 cagatggggt ggttttggtg cttacagtcc caacacagca ggcccatgtg caatgtccca
     5821 agccaccaat ttgggcttta tcgatgctac tccaacctct gtactgtccc ttggagggtg
     5881 gaggagccta tgacatgatg ccagagccag agttagggac gagtgaccgg aatggggagt
     5941 tttcccatat gtgggattag actaaattca gtgtgatttc tctttgccct ttcaaacctt
     6001 attcaggttg ggactcattt ctttctggtg gatcacagct acccagatgt gtagattgat
     6061 ctctatgttc tatagagaaa tccttttctt tcatcttcag cagggttttt atttcatttt
     6121 tattttgcca ccaaaagaaa acattggagc atacgtcccc tcttgattgt gactttccag
     6181 tgttgaccgt tcagttcttt gtgttgtagg tcccagccca ccagtactat atcaaacact
     6241 gttaggctca tgatgcagca ctgtgatcta atttaaataa tactttttta ttatttatac
     6301 tactatatat aatatacatc aacacttttg ctatataacc taagtgataa accccttttt
     6361 ttggttacct gtcagactct agactttggt ttctattgca gttaacacag ttacagaatt
     6421 gtaatggtgt cttggttgtt ttgttttgtt ttgtttcttt tttctttttt cctttgtaac
     6481 ggaatgtgta aatcaaagta tatacattgt gtggtgttcc tgtttcttgg gatgtcatga
     6541 ggagttacac acagcattca gtgttctgta tagacctgcc cacctttgtg aattcatctg
     6601 ttaactcctc ctttgagagc acgccagcca cggtggctaa ctcccagcgt cctctctcct
     6661 gctggctatt cttgaattaa gcacagactc gtccactcgg ttgctttatc atgaataatg
     6721 ggtgtgactt ggtcactctt ccgcccttca gcaaacaagt gctagcttca ctgaccaaaa
     6781 attaaggaag gaaaacacca tttttaaaac gatccacctt ttcatggccg agacggatgt
     6841 tagtctacgg tgctgcctcg cgctgccgag cctccggaac gagcccgctg tggaatgacc
     6901 atttctgact tgctgtggga tgctcaaaag tacccttcct gtctcgttag tattggaatc
     6961 aagactcttt atttggactc tatacagcag tgttcctcca ctgtgttgca tttgcaaaag
     7021 tagagaacat gccttctcca cccttttgca aataattgat actccatatt ggattctcaa
     7081 aagacttcga tatggtgatc ctgtcaaacc tagaaattgt attatctttt catacctgac
     7141 ttccccgttt ctaaaagtaa acagcacact tttagttaca gacacagtcg ccatttctag
     7201 agtatgtgtg ttgaagccat ccaaggtcat agctggctca gccagcctca ctccatcgtt
     7261 ctcactgcct gtcctgccat ggtgaacatg gggagagaaa aagaatctgt gtgtgtctgg
     7321 gaaacagcta catcaacttt ttatttttac tactctgatt ctgtaacact tctgagtttt
     7381 gttgtaattt tacagaaaac aagaccacaa tgataaagca gaaaaccaca cggtttgtgg
     7441 ctgaatctta gagtcacctg acctttcctg gccaacaggt ctacatggcc aaattaattt
     7501 acaagagtaa taatttcttc agaagccaat ttttttttct gtatttctgt ataaaactgc
     7561 caatatcatg aagagaaggg gagaaccgga aaggagaaag aaaacgatgt ttggtggtgt
     7621 ttgtgttagc ctaaagcagc ggtgtggaga tggctccatc agccgagctc cagggacttg
     7681 gtgttgcttg ggagggatcc atacagcatt ttgcgttctt catgtgtaat catattgcca
     7741 aagacaaact acttcatcat ttattgtaaa taacacttcc ccagacctac cataaagttc
     7801 tgtgatgtat tgtcttccag ttgcaataaa aattactgag ttgcatcaat tgaaaa
//
