LOCUS       XM_006516233            7796 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus forkhead box N3 (Foxn3), transcript variant
            X3, mRNA.
ACCESSION   XM_006516233
VERSION     XM_006516233.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000078.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_006516233.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7796
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="12"
     gene            1..7796
                     /gene="Foxn3"
                     /gene_synonym="5430426H20Rik; Ches1; Ches1l; HTLFL1"
                     /note="forkhead box N3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 4 mRNAs, 10 ESTs, 3706
                     long SRA reads, 5 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     11 samples with support for all annotated introns"
                     /db_xref="GeneID:71375"
                     /db_xref="MGI:MGI:1918625"
     CDS             171..1610
                     /gene="Foxn3"
                     /gene_synonym="5430426H20Rik; Ches1; Ches1l; HTLFL1"
                     /codon_start=1
                     /product="forkhead box protein N3 isoform X1"
                     /protein_id="XP_006516296.1"
                     /db_xref="GeneID:71375"
                     /db_xref="MGI:MGI:1918625"
                     /translation="MGPVMPASKKAESSGISVSSGLSQRYRGSGFSKALQEDDDLDFP
                     LPDIRLEEGAMEDEELTNLNWLHESKNLLKSFGESVLRSVSPVQDLDDDTPPSPAHSD
                     MPYDARQNPNCKPPYSFSCLIFMAIEDSPTKRLPVKDIYNWILEHFPYFANAPTGWKN
                     SVRHNLSLNKCFKKVDKERSQSIGKGSLWCIDPEYRQNLIQALKKTPYHPPPTPQAYQ
                     STSGPPIWPGSTFFKRNGALLQDPDIDAASAMMLLNSPPEIQAGFSPGVIQNGARVLS
                     RGLFPGVRPLPITPIGMTAAIRNSITSCRMRTESEPPCGSPVVSGDPKEDHNYSSAKS
                     STARSTSPTSDSISSSSSSADDHYEFATKGSQEGSEGSFQSHESHSEPEEEDRKPSPK
                     EGKDALGDSGYASQHKKRQHFAKARKVPSDTLPLKKRRTEKPPESDDEEMKEAAGSLL
                     HLAGIRSCLNNITNRTAKGQKEQKETAKN"
ORIGIN      
        1 acagttgcag aaatagtagc ttgcaggttt ctgatatcgc atcagcggac aggcggcacg
       61 cactatatta acagcctctg gaagtgtcgc ctagtgatta tgaagacacc tttgtccttt
      121 ctggagcgat gctgacctgg acccattctg actcaggagc cttcacgtaa atgggtccag
      181 tcatgcctgc cagtaagaag gccgagagct caggaatcag tgtgtccagt ggactgagtc
      241 agcgttaccg gggcagcggt ttctccaagg ccctccagga agacgatgat cttgacttcc
      301 ctctgcccga catccgatta gaagaggggg ccatggaaga tgaagagctg accaacctga
      361 actggctgca tgagagcaag aacttgctga agagctttgg ggagtcggtc cttaggagtg
      421 tcagtcctgt gcaggaccta gacgatgaca ccccaccatc ccctgcccac tcggacatgc
      481 cctatgatgc caggcagaac cccaactgca agccccccta ctcctttagc tgcctcatat
      541 ttatggccat cgaggactct ccgaccaagc gccttccagt gaaggacatc tacaactgga
      601 tcttagaaca tttcccgtat tttgcaaatg cacctactgg gtggaagaac tcagtgagac
      661 acaacttgtc attgaataag tgtttcaaga aagtggacaa agagaggagt cagagtattg
      721 ggaaagggtc attgtggtgc atcgacccag agtatagaca aaatctaatt caggctctga
      781 aaaagacacc ttaccaccca cctcctactc ctcaggctta tcaaagcaca tcaggtccac
      841 ccatctggcc gggcagtacc ttcttcaaga gaaacggagc cctcctgcaa gatcctgaca
      901 ttgatgctgc cagtgccatg atgcttttga attctccccc tgagatacaa gcaggttttt
      961 ctccaggagt gatacaaaat ggagcgaggg ttctgagtcg agggctgttt cctggtgtcc
     1021 ggccgttacc aatcactccc attgggatga cggcagccat aaggaatagc atcaccagtt
     1081 gcaggatgcg gactgagagc gagcccccat gtggctcccc agtggtcagt ggcgatccga
     1141 aggaggacca caactacagt agtgccaagt cctccactgc ccggagcacc tctcccacca
     1201 gcgactccat ctcctcttcc tcctcctcag ccgacgacca ctatgagttt gctacgaagg
     1261 ggagccagga gggcagtgag ggaagcttcc agagccatga gagccacagt gaaccagagg
     1321 aggaggaccg gaaacccagc ccgaaggaag gcaaggatgc cctgggggac agcggatacg
     1381 catcccagca caagaagcgc cagcacttcg ccaaggccag gaaggtcccc agcgacacac
     1441 tgcccctcaa aaagagacgc acggagaagc cgcccgagag cgatgacgag gagatgaagg
     1501 aggcggccgg ttcactcctg cacttagcag ggattcggtc ctgtttgaac aacatcacca
     1561 atcggacggc caaggggcag aaagaacaaa aggaaaccgc aaaaaattga aacaagtctc
     1621 tgatttgttt tgaacttatg gccatttggt ttcagcatgt caggagattt ctaatgattt
     1681 gtggcaatat cagcaatttt tttctttttt cttttttttt ttttcttttt tccttttgtt
     1741 ggtttggttt tcttttcttt ctttctttct ttcttttgtt ttttaatttg ccccccactc
     1801 ctttgttttt ggacccttaa aattttttct gtttaaagga gattgaagcc atagaaactc
     1861 atattgacac tcagccgttt tacaaaagct tttctttatc tgaatacaaa aaccgaaagg
     1921 aaaaaaaaaa aagccaaaat taaccattgc ttcctgcagc ctgtcagaaa cctgtggcta
     1981 aacccacagg gctgtccatg ttaatgccac aggaacatgg agcaccacct aggaggcaca
     2041 cacgcacaca gagtcagtcg tcactgctca gcccaaccct taggtttaag aagtcagttg
     2101 tgtttggagt gaggctggga agcagttaca gagactgaag agcccttgtc ccctagagga
     2161 taaccccatg ctctggccct ggcatcccaa ggtaccacaa atgccatcgg ccttgctgtg
     2221 tggcaagccc agggcctggc tgccagtcct ctgtgtttct tagccttgag cctggtaaca
     2281 tctcccaggc tgaataccag actgttcagg tgtattaggt gtcagtgact gaggagggaa
     2341 aacagggatc gtcagagcca ttgataacca ctgagttctg ctctatgtta aattaagaag
     2401 acttccaaag ccataagcct gaaggttggt cctgtgtgtg tgtgtgtgtg tatgtgtgtg
     2461 cgcgtgcatg tgcacacaaa cacacaactt aaaggtgatg cagaaaatag gctgtgccct
     2521 cttaactgcc caaggaaaag caatcatgcc caagaaatga cagtagctgt taagaaaaat
     2581 ggtacagatt tttttcctcc taaataaata atctgaccca agttgggagg gggggtgcta
     2641 cggaaactgc cattagtatt atggtgtctt tatgagatta aaggcacatt gatggactca
     2701 acaaagcaaa aacatgacaa acaatacaac tcctgtactg tcctcaaaaa gggtttgcaa
     2761 ttaatatcag tactcatttt tgcaacaaag aaaaacagaa cagatcagtg actttcacat
     2821 tcagccagtg tagccagcag aaatttctga tccacaaatg catggattcc tttgaagaaa
     2881 aagaaaaaaa aaaaaaagaa aaaggaaaaa aaaatcacaa aaacaaactt ttttttattc
     2941 aaaaataaca aagttcttgt aaggtaaata atgtatttag catgaagcat gaattatttt
     3001 catataaata tagagaatag agagaagact atgcctctaa cttttaagcc ctaaagctta
     3061 gaggcccttt gttctttttc tttctttctt tttccttttc cttttttttc cttttttttt
     3121 tttttttgtt attattattt tgtttttttg ttttttttga agcaggtgtt taaggtttaa
     3181 ccttcttcag ggacaaattc tgactgttgg ggaacttact ctgcaatata aattatcttc
     3241 atgctctggt aggggcttgg atggttgagc tctgtactgc cttgtctgca ctcagccccg
     3301 accccctctg attctctact gaagagtgtg tccttcccta tgtctgtatg tgtttaacac
     3361 gacgcaataa ttcgagggca aacttagtgt gtacgataga ctcgagagag ttatgggacg
     3421 cttacttgag gaaaatcctt accgtgatct ggttctagga aaaaggcagt gaataattat
     3481 gcaaattcgc cagaagaagg ggaaacacgc taatgggcct tactgggtga gggtaagaaa
     3541 tgggtacatg ggttggagga agtacgccat caaggggttg gatggagcag ccccgagcga
     3601 gcgagcgagc gttctactgt gacagtgtga ttgcgcagtg aggagggggc tggccatctc
     3661 tgccacttcg gcacagtaac caccttggga ctaagaccac ctagatagtg agagctgaac
     3721 aacaaccaga ccatgtcaca caagccagaa actccagtta cctttgccaa aaaaaaaaaa
     3781 aaaaaaaaaa ggaaaaaaga aagttttttc cttgaggtct aaacgagaaa tccctaaaac
     3841 aatatggcct cccgtccaaa tggagggaac atttaaaaac aaaatcacta ccgtggctca
     3901 gggtcagata tttggaagag agaggaaagt aaagtgacct tgaactcttg aaacagggca
     3961 gtggtgggcc tttaaagctg tgtccacctg tcagtaccag gtaccatggc aacggcggca
     4021 gccacttccc cctacctaac ctgagggcag cttttgggtg ggaggggggc acccactcta
     4081 gggcaggcta gatttacccg cagcctgggc tctctcagcg tgagggttcg gggttagatg
     4141 agagcacggg tgtgttctcc acaaacctct ggcacccaac aagccatcca cagctctgga
     4201 accctgagcc acgctttggt ttctgctgtc aacttaccaa gtccaaaaga ttccccaccc
     4261 ccacccccac cccaccccca agatgttcaa actcagacct gaaggtaaag gtaagcactc
     4321 agcactgttt gtggcagggg gcttcttccg atgcaaaccc cacacggctg tctcccctcg
     4381 gttcattttt tctgaagggg cagaggcccc tttcagaggt gacaagatgc agtgtgtgtg
     4441 tgtgatttac ttttctgatc tcgtggagat ctggagaact atcttataca agtgtgttct
     4501 gaaccgcaga accactccgt ttgcataaat acctcaccgg gcagctttct aagtgttatt
     4561 ttcctgagcc tcccttggca ccttcgttgg aattttctgg aagacttgtt ggggaaactt
     4621 tagtaagggt actgttttct attttccttc tgttttgggc ggcatacgca ttatgcataa
     4681 ccaaaacaat ggctcaattg tgtttaactc tgtattttga ctgttgaggc gaaaaacaaa
     4741 gtcatcaatg tgtatgtggc tgtttgtagc gaagtctgcc gaatgaggct gtccgtgtcc
     4801 ttaacaagcc aaggggcagg aggcaccctc tctttcccct cccccaagag cagtagagaa
     4861 tttaagcaca agcctatttg tgaaagaata ttttgcttaa gtgtaattca ctttagtgtt
     4921 ggacttcctt cccaaatgtc aggtgttctt ttagctttca aactagcctg tgtatccatt
     4981 agtctgacag atcgcctgag catcattaaa gggatgtggt ggggttttgt ttttggtttt
     5041 gtttttttgg ttttttcctt gcatttctcc tgtggggaga agtggcgggt taatgtgtca
     5101 ttccagtatc tcacggactc acatggggtg gggggagggg caagtgggga actatagcaa
     5161 tatctgcaga tgctttgggg acacatagca ccgcgacata acaactgccg gctgtcagcc
     5221 ctcagacaca gttaagagaa gagagagact cactctcttt tcttaggtga tgctcacatc
     5281 cacgtgtttt accccgctcc tgacagtctt tcctcattct ctagtacttt tttggagaaa
     5341 gggtctgcac cgtacttagg ttttctttct aatatacatc accaagctcc tacttccctc
     5401 tgcatctcca gtcagtatgt tttttttttt ttttcaggag ttcttttagt aaagctggct
     5461 ctctgaatct aaagctgaac caaaaccaca cacagattgt ggcataagga actcgtggtc
     5521 aggatgactg gggcaggtct ccatcttggg gccacgtctt tcaaggaggg atgggttggc
     5581 gccctttccc aagagcgggt ttttcctgta gtcgctagcc tgtctattgc ctcctgttca
     5641 gagcagttcc gaccacggag ctttcttgaa ggacgattgc attctgtggc gcccgagcca
     5701 cagatggggt ggttttggtg cttacagtcc caacacagca ggcccatgtg caatgtccca
     5761 agccaccaat ttgggcttta tcgatgctac tccaacctct gtactgtccc ttggagggtg
     5821 gaggagccta tgacatgatg ccagagccag agttagggac gagtgaccgg aatggggagt
     5881 tttcccatat gtgggattag actaaattca gtgtgatttc tctttgccct ttcaaacctt
     5941 attcaggttg ggactcattt ctttctggtg gatcacagct acccagatgt gtagattgat
     6001 ctctatgttc tatagagaaa tccttttctt tcatcttcag cagggttttt atttcatttt
     6061 tattttgcca ccaaaagaaa acattggagc atacgtcccc tcttgattgt gactttccag
     6121 tgttgaccgt tcagttcttt gtgttgtagg tcccagccca ccagtactat atcaaacact
     6181 gttaggctca tgatgcagca ctgtgatcta atttaaataa tactttttta ttatttatac
     6241 tactatatat aatatacatc aacacttttg ctatataacc taagtgataa accccttttt
     6301 ttggttacct gtcagactct agactttggt ttctattgca gttaacacag ttacagaatt
     6361 gtaatggtgt cttggttgtt ttgttttgtt ttgtttcttt tttctttttt cctttgtaac
     6421 ggaatgtgta aatcaaagta tatacattgt gtggtgttcc tgtttcttgg gatgtcatga
     6481 ggagttacac acagcattca gtgttctgta tagacctgcc cacctttgtg aattcatctg
     6541 ttaactcctc ctttgagagc acgccagcca cggtggctaa ctcccagcgt cctctctcct
     6601 gctggctatt cttgaattaa gcacagactc gtccactcgg ttgctttatc atgaataatg
     6661 ggtgtgactt ggtcactctt ccgcccttca gcaaacaagt gctagcttca ctgaccaaaa
     6721 attaaggaag gaaaacacca tttttaaaac gatccacctt ttcatggccg agacggatgt
     6781 tagtctacgg tgctgcctcg cgctgccgag cctccggaac gagcccgctg tggaatgacc
     6841 atttctgact tgctgtggga tgctcaaaag tacccttcct gtctcgttag tattggaatc
     6901 aagactcttt atttggactc tatacagcag tgttcctcca ctgtgttgca tttgcaaaag
     6961 tagagaacat gccttctcca cccttttgca aataattgat actccatatt ggattctcaa
     7021 aagacttcga tatggtgatc ctgtcaaacc tagaaattgt attatctttt catacctgac
     7081 ttccccgttt ctaaaagtaa acagcacact tttagttaca gacacagtcg ccatttctag
     7141 agtatgtgtg ttgaagccat ccaaggtcat agctggctca gccagcctca ctccatcgtt
     7201 ctcactgcct gtcctgccat ggtgaacatg gggagagaaa aagaatctgt gtgtgtctgg
     7261 gaaacagcta catcaacttt ttatttttac tactctgatt ctgtaacact tctgagtttt
     7321 gttgtaattt tacagaaaac aagaccacaa tgataaagca gaaaaccaca cggtttgtgg
     7381 ctgaatctta gagtcacctg acctttcctg gccaacaggt ctacatggcc aaattaattt
     7441 acaagagtaa taatttcttc agaagccaat ttttttttct gtatttctgt ataaaactgc
     7501 caatatcatg aagagaaggg gagaaccgga aaggagaaag aaaacgatgt ttggtggtgt
     7561 ttgtgttagc ctaaagcagc ggtgtggaga tggctccatc agccgagctc cagggacttg
     7621 gtgttgcttg ggagggatcc atacagcatt ttgcgttctt catgtgtaat catattgcca
     7681 aagacaaact acttcatcat ttattgtaaa taacacttcc ccagacctac cataaagttc
     7741 tgtgatgtat tgtcttccag ttgcaataaa aattactgag ttgcatcaat tgaaaa
//
