LOCUS       XM_030249497            5063 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus forkhead box N2 (Foxn2), transcript variant
            X3, mRNA.
ACCESSION   XM_030249497
VERSION     XM_030249497.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000083.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030249497.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5063
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="17"
     gene            1..5063
                     /gene="Foxn2"
                     /gene_synonym="3230402J05Rik; 6030465J18Rik; Fkh19; Foxn1;
                     HTLF"
                     /note="forkhead box N2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 3 mRNAs, 7 ESTs, 838 long
                     SRA reads, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 18 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:14236"
                     /db_xref="MGI:MGI:1347478"
     CDS             167..1456
                     /gene="Foxn2"
                     /gene_synonym="3230402J05Rik; 6030465J18Rik; Fkh19; Foxn1;
                     HTLF"
                     /codon_start=1
                     /product="forkhead box protein N2 isoform X1"
                     /protein_id="XP_030105357.1"
                     /db_xref="GeneID:14236"
                     /db_xref="MGI:MGI:1347478"
                     /translation="MGPVIGMTPDKRAETPGAEKVAGLSQIYKMGSLPEAGDAARPKA
                     TLVGSESADDELTNLNWLHESSNLLTNLRLGSEGLPMVSPLYDIEGDEMPSFGPSCYQ
                     NPEKKSATSKPPYSFSLLIYMAIEHSPNKCLPVKEIYSWILDRFPYFATAPTGWKNSV
                     RHNLSLNKCFQKVERSHGKVNGKGSLWCVDPEYKPNLMQALKKQPFSSPQSAALSPHC
                     LSSALKQSQVQTLQESDIDAATAMILLNTSIEQEILECEKPLPLKTSLQKKRSYGSAF
                     SAPGAVRLQESPSPTAGIDPKADHNYSANSVAAQRCASRASMSSLSSVDEVYEFIPKS
                     SHGGSDGSEGFHSDEETDAEDEEDPLGDSGYAPQARGHSTLKGQPGKKIPKQSCQEID
                     EELKEAAGSLLHLAGIRTCLGSLISTAKAQSQKHREK"
ORIGIN      
        1 ctttcagaat gagaaaggag atctgggagg ctccttcccc agcacctcac aagccagatg
       61 tcaccacagc acagacctgt agttccagca ctcagaaggt tgaagctgca ggacctgaag
      121 ttcagggtca tacttgtcta catagggctc agaaatatac gagtaaatgg gtccagtaat
      181 tggaatgact ccagataaga gagctgagac cccgggagct gagaaggttg caggactgag
      241 tcagatttac aaaatgggaa gtttgcctga agctggggat gctgccaggc caaaggccac
      301 tcttgtgggc agtgagtcag cagatgacga gctaacaaac ttgaactggc ttcatgagag
      361 cagtaacctt ctaacaaacc tcagacttgg aagtgaaggc cttcccatgg tcagtccgct
      421 gtatgacata gagggagatg agatgccatc ctttggacca tcgtgctacc agaacccaga
      481 aaaaaaatca gcaacttcaa agcccccgta ctcctttagt cttctcattt atatggctat
      541 tgaacactcg ccaaataaat gtttgcctgt caaagaaatt tacagctgga ttctggatcg
      601 cttcccatac tttgccactg cacctacagg ctggaagaat tctgttcggc ataatctatc
      661 cctgaataaa tgttttcaga aagtggaaag aagtcatggc aaggttaatg gaaaaggctc
      721 cttgtggtgc gttgatccag aatataagcc caatcttatg caggccttaa agaagcagcc
      781 tttttcttct ccacaaagtg ctgctttatc acctcactgc ttaagctctg ctctcaagca
      841 aagccaagtg caaactctcc aagaatctga cattgatgca gccactgcaa tgatactttt
      901 aaatacttca atagaacaag agattttaga atgtgagaag ccactgcctc ttaaaacatc
      961 actgcagaag aagaggagtt acggcagcgc gttcagtgcc cccggtgctg tgcgactgca
     1021 ggagagcccg tctccaaccg ccggcatcga cccaaaagcc gaccataact acagtgccaa
     1081 cagcgtggcg gcccagcgct gcgcatccag ggcgagcatg tcttctctgt cctctgtgga
     1141 tgaggtgtat gaattcatcc caaagagcag ccacggcggg agcgacggta gcgaaggctt
     1201 ccacagcgac gaggagacgg atgcggagga cgaggaggat cctctgggag acagtggcta
     1261 cgcaccgcaa gctcgtggac acagtactct gaaagggcag ccaggcaaaa agatcccaaa
     1321 acagtcctgt caagagattg atgaggagct caaagaggca gccgggtcgc tgctccacct
     1381 tgctggaatc cgcacctgcc ttggttccct gataagtact gcgaaggcac agagtcagaa
     1441 gcaccgggaa aagtagacat gcgcagagtg tgaagttact ctaaagttac tctaaagtta
     1501 ctcttctact caacttttac agggatgtca gagccatagc ggacggacgg acggacggac
     1561 ctcttcagct gagggtgggg gagggggcca cttgtttctt tctaagtctg ttttggttgc
     1621 ttttcttttt ttttgtttaa ttaatcagtt gctcttagga tcatgcctaa ttgtaaatct
     1681 gacataaatg gccccacaat ttaatttctg tgaataagtg tctcccagat ttggaaaatt
     1741 ttgtatagga gaattctcag cctctgtctt aaacttacag gaaaaaaagt cccttttttt
     1801 aatcggtaaa aaattggtaa ctcggacttt tcatttttct tcccattctg ctattaacta
     1861 gttactggca tctttctcac atgcttctct cctgacacac tgcagaaggg tggaatgggg
     1921 atcttttgtc tttgttttca ggttactctt tgttacagca tgagcatagc cttttgaatt
     1981 ggaaagatcc tagatgccta gaaggttctc tggtttgtag agaatataac tgctctaagg
     2041 attaggaaag gccatttggg gatgtggcca tcttaagact aattcctcct gcaatagtta
     2101 tctttgaaat gtttttacct cgcagttaat gcatagcttc actggggcct ttaccttttc
     2161 ccagaatact ctgcaagtgt ttaagtttta gctgctagct gtcttagtta agtaagaatt
     2221 gtctgatgag aggatacagc cagagcgtgt catggaatga cagtcatcgt gacacacttg
     2281 taccgaaaga gatccttgca tttgttttct cagcgtactg taatgaagat gtgttatgac
     2341 atcataagta aaggaaagtc atcgagggca agactctcca aactttgtat aattgaaatt
     2401 aaatgtgtaa tgaattagat ttaaaacatt attaaatgtt cccattaagg aaaatacaga
     2461 gataaatatc ttcagggatt tcaaaatata tgtaaaaatt ggatcttaca caaaactctt
     2521 tgagaaggca atgtaatacc tgtatgtgcc attaatccac gctaaaagat ttttttatac
     2581 tactatttca aaagtgcatt ggctaagata ttttaagtat ttgaatggaa ctgcttatat
     2641 aagtcagttt tcatatcact tacagtttga ttatagtatt tagagcaggg atactaatac
     2701 tataactcac atatatattt ttttacagtg gtgagagaaa ctttgggaaa gtttagtctt
     2761 atttcatgat acgtcctgta ttctagacag caacctttga atttttctca tttatatgga
     2821 tatatataca cttgctatat gcaacataca taggctcagg ttagtttcct gctttcaaat
     2881 gtttttatga ctatggactt ttttaaagag acaaatgttt ttatttttac ttctaatttc
     2941 tttctgggca atactgtcaa atgagaagaa aaacagaagc cctgtttctt aattgacacc
     3001 acttaagcta taacagtatt gatatactcc cgtttccatg ttagttgtaa ttaaatctgg
     3061 atagccgact taatggaatt ggtgctacta aaatatagac atttttcttt tattgataat
     3121 gcaggatgaa gaatttggaa tttttctaat tcataaatgt catctttcta gaaaacagtt
     3181 aaatgaagtt agtttttact gcagtgaata aaacaccaag cagaagtgtg aagtgtggtc
     3241 ttatcgtggt acaagtctta aagagatggt agagttcagt ggatagcagg gaattgtgaa
     3301 gcaggtcacc acgcccttct gggtggacct gtcacagggt caccacattc cgtgcttcac
     3361 cagcagtatg tctctcaagg ccctgtgcag cgggcatgtt gttctgcaaa tggaggaaaa
     3421 tggtctgaag taggaggaaa gagttgttct cagctccaag agaaagacct ctccagaatt
     3481 cgtgtttagg cagtaactta aattcctttc cctcctcctt caaatggcct cttacttaaa
     3541 gcaacagcca ttagcaagga tgatgcatgc ccgtgcactc aagactaata agcagtgttc
     3601 tctaacacct tgcacttggc tctcttacaa ggattcgatt tctcactttt catttgctgc
     3661 tgtgtctaag catcctcctt caaggggaga gagagccttt gagatctggt cccttgtgat
     3721 gttcttagag acagattatg ctcctgtttg gtgtgctcag attgaagcct ggcttggaac
     3781 catccaggcg acgaattgta tgggctagaa attcccaata gataacaagc tttgtgtatg
     3841 aagtaaacac ggcttagaaa tccagggaca gcccaggtct cagtgattta aagctggtgt
     3901 tggctaaggt atactctgcc ttacaccgaa acaagaattt ggttggaacg aattccattt
     3961 ctaagggatg cctaaaagaa gttgtgtcct acttagcact gttagcttca ttttccactt
     4021 tgccaagaga atcagtgttt cttgagtatg actttgaaat ttgtgcaata tattactaaa
     4081 atagttgatt tttttttttt tttttttttg ctttcaaatt tagaacgaaa cattgcctag
     4141 atcagtagaa aagcaagggg tgtgtcaccc cctttccttg gagccttttc tgctctcata
     4201 gccagctcta cttctcttga ctgggattcc tttgtacatt gtaaagttga gcatatgttc
     4261 tcagtgcttt ctgaggcatt atgtaaaggg ttcatactag atggtcagtt agatacatgt
     4321 tagcattagc gtagttcaaa gctggagcag gcgttgaggg aatgcttgtg tcttgtagac
     4381 tggaggcctt ttcagtagct taggctgttg tcccagatgg acagcagctt aatgcctttt
     4441 gaaaactata taaagcgact tttgaggctt tcaggtttac atgtatgtcg taggtatttt
     4501 tttttaattt tgaaatgttt aagttttaat taaagtttac tccagtatgt taatgatgta
     4561 gtcaaatatt tattgaaagg caaaatagaa tattttaatg ttatccctgc catttttcaa
     4621 gaatattctt tgcatctaac tgccagtgcc attgtcaaac ttgttttcaa aattgttgta
     4681 cttttttatt aaacagagtg cttaatttta aagtattatg ttgccatcat atagtgtata
     4741 aaatgtaaaa ttgccaattc attgtaccta ttatttattt ttaaactaaa gtataagaat
     4801 accttttgat tgaagaaatt tgttattaaa ttgttttttt tctgatgtag cataaaatct
     4861 tctgagttta actgccaata gatgaccagc cacaagtgaa ccacttctca gttgccagcc
     4921 ttgcttatag cagaagcaac ttacaaacat ttagtttttg tatctaatct ctgactatta
     4981 aaatgtttat aaagtttatt tttaccaaag agatgcaatt cattatgata aagttgcaga
     5041 ataaatgtcg ttttataaca ctt
//
