LOCUS       XM_017314292            3165 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus forkhead box N1 (Foxn1), transcript variant
            X13, mRNA.
ACCESSION   XM_017314292
VERSION     XM_017314292.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000077.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_017314292.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3165
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="11"
     gene            1..3165
                     /gene="Foxn1"
                     /gene_synonym="D11Bhm185e; Fkh19; HFH-11; Hfh11; nu; nude;
                     Whn"
                     /note="forkhead box N1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 9 ESTs, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:15218"
                     /db_xref="MGI:MGI:102949"
     CDS             45..1991
                     /gene="Foxn1"
                     /gene_synonym="D11Bhm185e; Fkh19; HFH-11; Hfh11; nu; nude;
                     Whn"
                     /codon_start=1
                     /product="forkhead box protein N1 isoform X1"
                     /protein_id="XP_017169781.1"
                     /db_xref="GeneID:15218"
                     /db_xref="MGI:MGI:102949"
                     /translation="MVSLLPPQSDVTLPGSTRLEGEPQGDLMQAPGLPDSPAPQNKHA
                     NFSCSSFVPDGPPERTPSLPPHSPSIASPDPEQIQGHCTAGPGPGSFRLSPSEKYPGF
                     GFEEGPAGSPGRFLKGNHMPFHPYKRHFHEDIFSEAQTAMALDGHSFKTQGALEAFEE
                     IPVDMGDAEAFLPSFPAEAWCNKLPYPSQEHNQILQGSEVKVKPQALDSGPGMYCYQP
                     PLQHMYCSSQPAFHQYSPGGGSYPVPYLGSPHYPYQRIAPQANAEGHQPLFPKPIYSY
                     SILIFMALKNSKTGSLPVSEIYNFMTEHFPYFKTAPDGWKNSVRHNLSLNKCFEKVEN
                     KSGSSSRKGCLWALNPSKIDKMQEELQKWKRKDPIAVRKSMAKPEELDSLIGDKREKL
                     GSPLLGCPPPGLAGPGPIRPMAPSAGLSQPLHPMHPAPGPMPGKNPLQDLLGGHAPSC
                     YGQTYPHLSPSLAPSGHQQPLFPQPDGHLELQAQPGTPQDSPLPAHTPPSHGAKLMAE
                     PSSARTMHDTLLPDGDLGTDLDAINPSLTDFDFQGNLWEQLKDDSLALDPLVLVTSSP
                     TSSSMLPPPPAAHCFPPGPCLAETGNEAGELAPPGSGGSGALGDMHLSTLYSAFVELE
                     STPSSAAAGPAVYLSPGSKPLALA"
ORIGIN      
        1 aaagccggga tggtgtccac ggcccagagc ccactgactg ggtgatggtg tcgctactcc
       61 ctccgcagtc tgacgtcaca cttccaggct ccacccgact ggagggcgaa ccccaagggg
      121 acctcatgca ggctccgggc ctcccagact cccctgcccc acagaacaag catgctaact
      181 tcagctgctc gtcgtttgtg cctgacggcc ctccagagag gacaccctca ctgcccccac
      241 acagccccag catcgcatct ccagacccag agcagatcca gggccactgc acagccggac
      301 ccggcccggg ctccttccgc ctttctcctt cagaaaagta tcctggcttt ggctttgagg
      361 agggcccagc aggcagccca gggcgcttcc tcaagggcaa ccacatgcct ttccacccct
      421 acaagaggca cttccatgag gacatcttct ctgaggccca gacggccatg gcacttgatg
      481 gacactcctt taagactcag ggggcactgg aagcctttga ggagatccct gtggacatgg
      541 gcgatgctga ggccttcctg cctagcttcc cagcagaggc ttggtgcaat aaactccctt
      601 accccagcca ggaacacaac caaattctgc aggggtcaga ggtcaaggtc aagccccaag
      661 ctctggacag tggtcctggg atgtactgct accagcctcc cttgcaacat atgtactgtt
      721 cttctcagcc tgccttccat cagtactccc cgggtggagg cagctaccct gtgccctacc
      781 tgggctcacc tcactatccc tatcagagga ttgcacccca ggccaacgcc gaaggtcacc
      841 agccactctt cccaaagccc atctactctt acagcatcct catcttcatg gcccttaaga
      901 acagtaagac cggaagcctt ccagtcagtg aaatctacaa tttcatgacg gagcacttcc
      961 cttacttcaa gactgctcct gatggctgga agaattctgt tcgccataac ctgtccctca
     1021 acaagtgctt tgagaaggtg gagaataaat ccggaagttc ctctcgaaag ggctgtctgt
     1081 gggccctcaa tccttccaaa atcgacaaga tgcaggaaga actgcagaag tggaagagga
     1141 aagaccccat tgctgtgcgc aaaagcatgg ccaaaccaga agagctggac agcctcattg
     1201 gagacaaaag ggaaaaactg ggctctccgc tgctgggctg tccaccccct gggctggcag
     1261 gcccaggtcc catccggccc atggcaccat cagctggtct ttcccagcct ctgcacccaa
     1321 tgcatccagc tccaggcccc atgcctggca agaaccccct gcaggaccta ctgggtggcc
     1381 atgctccctc ctgctatggg cagacctacc cacacctttc ccccagcctg gccccttctg
     1441 gacaccagca gccattgttc ccacagccag atgggcatct tgagctgcag gcccagccag
     1501 gcacccccca ggactcacct ctacctgccc acacaccacc cagccacggt gccaagctga
     1561 tggctgagcc ttcctcagcc aggaccatgc acgatactct actgccagat ggagaccttg
     1621 ggactgacct ggatgctatc aacccttctc tcactgactt cgacttccag ggaaatctgt
     1681 gggagcagct gaaggatgac agcttggccc tggaccccct cgtattggtg acctcgtcgc
     1741 cgacgtcatc ctccatgttg ccacccccac cagcagccca ttgcttcccc ccagggcctt
     1801 gtctggcaga aacaggcaat gaggcaggtg aactggcacc tccaggcagc ggcggctccg
     1861 gtgctctggg agacatgcac ctcagcactc tctactccgc ctttgtggaa ctggagtcca
     1921 cgccctcctc agcagctgcc ggccctgccg tgtacctcag tcccggctca aagccattgg
     1981 ctctggcttg agctatgccc aacatcagct gcggcctttg cctagctggc tgccccatat
     2041 tgggctcacc ttaaaggtca aagaaggaaa acactacctg tctcctatgc cactcagcca
     2101 acttatttgt tagccagaag ttgggggcat ccatctagga tgctacctgg tggacccgca
     2161 tctcacacgg ggcccccagc aaggaaagtg tcggaaaaga agcaacagcg cgccccctag
     2221 cgccagctca ctcgaacttc agctctcgag cgtgaactca agctctacac acctgctcat
     2281 catgtgcctt acactcagag gaagccttgg gtcacagagt ctgatttgat ttctggggca
     2341 gctgagagct aaaagcttta gttagcaaag ctcagggcca gtgtgacagg tcaaagatca
     2401 cccctccaaa cctcatccca atccccatgt gctctacaga cttggccctc tcccagaaat
     2461 ctctatttat tctcccatct tacaccctta aagcctacag gggctcctcc cgtatgacct
     2521 gtgaacccct tagggagaca actacttcat agaatttatc tatacatctt cagtatatac
     2581 tctggttggc catctccaag gtgacacaca gaaggggcag catctaccct gggaccaaac
     2641 tgagcccaaa tccaacacaa catgtttgga aaaaaaaaaa aaaacttgtc ctcagaaact
     2701 tgaaccccct ctcttagtct cagccacagg aaaggccccc ttcaggttgc caagtctcac
     2761 tctttctcaa tgagaggttc atatagttca agccccagcc tattggatgc ggtcaactgt
     2821 cttaagcatc ctgagtaact agggtttgca acccgctaca ggatgatgtg tgtgtgtgtg
     2881 tgtgtgtgtg tgtgtgtgat acccccccac acacacacac acatacacac acctgcatag
     2941 cagacttggg gctcccaggg agccggcaga atgtccgtgg agctgagctg tgactcagat
     3001 gcccaccatg acccaccaaa tgggatcccc agctttccca gggcctgagg gcaaccagaa
     3061 cctccatagg ttgtccccaa gctcacacga gggtgggcgg atccctcagt catctaccat
     3121 tgtcccctgt cctggaacaa taaagtaagc gcctgatggt tgcaa
//
