LOCUS       XM_017314288            3192 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus forkhead box N1 (Foxn1), transcript variant
            X8, mRNA.
ACCESSION   XM_017314288
VERSION     XM_017314288.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000077.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3192
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="11"
     gene            1..3192
                     /gene="Foxn1"
                     /gene_synonym="D11Bhm185e; Fkh19; HFH-11; Hfh11; nu; nude;
                     Whn"
                     /note="forkhead box N1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 9 ESTs, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:15218"
                     /db_xref="MGI:MGI:102949"
     CDS             72..2018
                     /gene="Foxn1"
                     /gene_synonym="D11Bhm185e; Fkh19; HFH-11; Hfh11; nu; nude;
                     Whn"
                     /codon_start=1
                     /product="forkhead box protein N1 isoform X1"
                     /protein_id="XP_017169777.1"
                     /db_xref="GeneID:15218"
                     /db_xref="MGI:MGI:102949"
                     /translation="MVSLLPPQSDVTLPGSTRLEGEPQGDLMQAPGLPDSPAPQNKHA
                     NFSCSSFVPDGPPERTPSLPPHSPSIASPDPEQIQGHCTAGPGPGSFRLSPSEKYPGF
                     GFEEGPAGSPGRFLKGNHMPFHPYKRHFHEDIFSEAQTAMALDGHSFKTQGALEAFEE
                     IPVDMGDAEAFLPSFPAEAWCNKLPYPSQEHNQILQGSEVKVKPQALDSGPGMYCYQP
                     PLQHMYCSSQPAFHQYSPGGGSYPVPYLGSPHYPYQRIAPQANAEGHQPLFPKPIYSY
                     SILIFMALKNSKTGSLPVSEIYNFMTEHFPYFKTAPDGWKNSVRHNLSLNKCFEKVEN
                     KSGSSSRKGCLWALNPSKIDKMQEELQKWKRKDPIAVRKSMAKPEELDSLIGDKREKL
                     GSPLLGCPPPGLAGPGPIRPMAPSAGLSQPLHPMHPAPGPMPGKNPLQDLLGGHAPSC
                     YGQTYPHLSPSLAPSGHQQPLFPQPDGHLELQAQPGTPQDSPLPAHTPPSHGAKLMAE
                     PSSARTMHDTLLPDGDLGTDLDAINPSLTDFDFQGNLWEQLKDDSLALDPLVLVTSSP
                     TSSSMLPPPPAAHCFPPGPCLAETGNEAGELAPPGSGGSGALGDMHLSTLYSAFVELE
                     STPSSAAAGPAVYLSPGSKPLALA"
ORIGIN      
        1 cccaggaggc actgggtgct tctcagagtc tcattgtctc tccagggaga ctcaggatca
       61 gggactgggt gatggtgtcg ctactccctc cgcagtctga cgtcacactt ccaggctcca
      121 cccgactgga gggcgaaccc caaggggacc tcatgcaggc tccgggcctc ccagactccc
      181 ctgccccaca gaacaagcat gctaacttca gctgctcgtc gtttgtgcct gacggccctc
      241 cagagaggac accctcactg cccccacaca gccccagcat cgcatctcca gacccagagc
      301 agatccaggg ccactgcaca gccggacccg gcccgggctc cttccgcctt tctccttcag
      361 aaaagtatcc tggctttggc tttgaggagg gcccagcagg cagcccaggg cgcttcctca
      421 agggcaacca catgcctttc cacccctaca agaggcactt ccatgaggac atcttctctg
      481 aggcccagac ggccatggca cttgatggac actcctttaa gactcagggg gcactggaag
      541 cctttgagga gatccctgtg gacatgggcg atgctgaggc cttcctgcct agcttcccag
      601 cagaggcttg gtgcaataaa ctcccttacc ccagccagga acacaaccaa attctgcagg
      661 ggtcagaggt caaggtcaag ccccaagctc tggacagtgg tcctgggatg tactgctacc
      721 agcctccctt gcaacatatg tactgttctt ctcagcctgc cttccatcag tactccccgg
      781 gtggaggcag ctaccctgtg ccctacctgg gctcacctca ctatccctat cagaggattg
      841 caccccaggc caacgccgaa ggtcaccagc cactcttccc aaagcccatc tactcttaca
      901 gcatcctcat cttcatggcc cttaagaaca gtaagaccgg aagccttcca gtcagtgaaa
      961 tctacaattt catgacggag cacttccctt acttcaagac tgctcctgat ggctggaaga
     1021 attctgttcg ccataacctg tccctcaaca agtgctttga gaaggtggag aataaatccg
     1081 gaagttcctc tcgaaagggc tgtctgtggg ccctcaatcc ttccaaaatc gacaagatgc
     1141 aggaagaact gcagaagtgg aagaggaaag accccattgc tgtgcgcaaa agcatggcca
     1201 aaccagaaga gctggacagc ctcattggag acaaaaggga aaaactgggc tctccgctgc
     1261 tgggctgtcc accccctggg ctggcaggcc caggtcccat ccggcccatg gcaccatcag
     1321 ctggtctttc ccagcctctg cacccaatgc atccagctcc aggccccatg cctggcaaga
     1381 accccctgca ggacctactg ggtggccatg ctccctcctg ctatgggcag acctacccac
     1441 acctttcccc cagcctggcc ccttctggac accagcagcc attgttccca cagccagatg
     1501 ggcatcttga gctgcaggcc cagccaggca ccccccagga ctcacctcta cctgcccaca
     1561 caccacccag ccacggtgcc aagctgatgg ctgagccttc ctcagccagg accatgcacg
     1621 atactctact gccagatgga gaccttggga ctgacctgga tgctatcaac ccttctctca
     1681 ctgacttcga cttccaggga aatctgtggg agcagctgaa ggatgacagc ttggccctgg
     1741 accccctcgt attggtgacc tcgtcgccga cgtcatcctc catgttgcca cccccaccag
     1801 cagcccattg cttcccccca gggccttgtc tggcagaaac aggcaatgag gcaggtgaac
     1861 tggcacctcc aggcagcggc ggctccggtg ctctgggaga catgcacctc agcactctct
     1921 actccgcctt tgtggaactg gagtccacgc cctcctcagc agctgccggc cctgccgtgt
     1981 acctcagtcc cggctcaaag ccattggctc tggcttgagc tatgcccaac atcagctgcg
     2041 gcctttgcct agctggctgc cccatattgg gctcacctta aaggtcaaag aaggaaaaca
     2101 ctacctgtct cctatgccac tcagccaact tatttgttag ccagaagttg ggggcatcca
     2161 tctaggatgc tacctggtgg acccgcatct cacacggggc ccccagcaag gaaagtgtcg
     2221 gaaaagaagc aacagcgcgc cccctagcgc cagctcactc gaacttcagc tctcgagcgt
     2281 gaactcaagc tctacacacc tgctcatcat gtgccttaca ctcagaggaa gccttgggtc
     2341 acagagtctg atttgatttc tggggcagct gagagctaaa agctttagtt agcaaagctc
     2401 agggccagtg tgacaggtca aagatcaccc ctccaaacct catcccaatc cccatgtgct
     2461 ctacagactt ggccctctcc cagaaatctc tatttattct cccatcttac acccttaaag
     2521 cctacagggg ctcctcccgt atgacctgtg aaccccttag ggagacaact acttcataga
     2581 atttatctat acatcttcag tatatactct ggttggccat ctccaaggtg acacacagaa
     2641 ggggcagcat ctaccctggg accaaactga gcccaaatcc aacacaacat gtttggaaaa
     2701 aaaaaaaaaa acttgtcctc agaaacttga accccctctc ttagtctcag ccacaggaaa
     2761 ggcccccttc aggttgccaa gtctcactct ttctcaatga gaggttcata tagttcaagc
     2821 cccagcctat tggatgcggt caactgtctt aagcatcctg agtaactagg gtttgcaacc
     2881 cgctacagga tgatgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgatacc cccccacaca
     2941 cacacacaca tacacacacc tgcatagcag acttggggct cccagggagc cggcagaatg
     3001 tccgtggagc tgagctgtga ctcagatgcc caccatgacc caccaaatgg gatccccagc
     3061 tttcccaggg cctgagggca accagaacct ccataggttg tccccaagct cacacgaggg
     3121 tgggcggatc cctcagtcat ctaccattgt cccctgtcct ggaacaataa agtaagcgcc
     3181 tgatggttgc aa
//
