LOCUS       NM_008240               2599 bp    mRNA    linear   ROD 18-JUN-2024
DEFINITION  Mus musculus forkhead box J1 (Foxj1), mRNA.
ACCESSION   NM_008240
VERSION     NM_008240.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2599)
  AUTHORS   Epstein,A.A., Janos,S.N., Menozzi,L., Pegram,K., Jain,V.,
            Bisset,L.C., Davis,J.T., Morrison,S., Shailaja,A., Guo,Y.,
            Chao,A.S., Abdi,K., Rikard,B., Yao,J., Gregory,S.G., Fisher,K.,
            Pittman,R., Erkanli,A., Gustafson,K.E., Carrico,C.W.T.,
            Malcolm,W.F., Inder,T.E., Cotten,C.M., Burt,T.D., Shinohara,M.L.,
            Maxfield,C.M. and Benner,E.J.
  TITLE     Subventricular zone stem cell niche injury is associated with
            intestinal perforation in preterm infants and predicts future motor
            impairment
  JOURNAL   Cell Stem Cell 31 (4), 467-483 (2024)
   PUBMED   38537631
REFERENCE   2  (bases 1 to 2599)
  AUTHORS   Lu,D., Zhi,Y., Su,H., Lin,X., Lin,J., Shi,Y., Yi,W., Hong,C.,
            Zhang,T., Fu,Z., Chen,L.Y., Zhao,Z., Li,R., Xu,Z., Chen,W., Wang,N.
            and Xu,D.
  TITLE     ESCRT-I protein UBAP1 controls ventricular expansion and cortical
            neurogenesis via modulating adherens junctions of radial glial
            cells
  JOURNAL   Cell Rep 43 (3), 113818 (2024)
   PUBMED   38402586
REFERENCE   3  (bases 1 to 2599)
  AUTHORS   Rayamajhi,D., Ege,M., Ukhanov,K., Ringers,C., Zhang,Y., Jung,I.,
            D'Gama,P.P., Li,S.S., Cosacak,M.I., Kizil,C., Park,H.C., Yaksi,E.,
            Martens,J.R., Brody,S.L., Jurisch-Yaksi,N. and Roy,S.
  TITLE     The forkhead transcription factor Foxj1 controls vertebrate
            olfactory cilia biogenesis and sensory neuron differentiation
  JOURNAL   PLoS Biol 22 (1), e3002468 (2024)
   PUBMED   38271330
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 2599)
  AUTHORS   Zhao,Q., Ren,Y.L., Zhu,Y.J., Huang,R.Q., Zhu,R.R., Cheng,L.M. and
            Xie,N.
  TITLE     The origins and dynamic changes of C3- and S100A10-positive
            reactive astrocytes after spinal cord injury
  JOURNAL   Front Cell Neurosci 17, 1276506 (2023)
   PUBMED   38188669
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 2599)
  AUTHORS   Xin,Q., Yu,G., Feng,I. and Dean,J.
  TITLE     Chromatin remodeling of prostaglandin signaling in smooth muscle
            enables mouse embryo passage through the female reproductive tract
  JOURNAL   Dev Cell 58 (18), 1716-1732 (2023)
   PUBMED   37714160
REFERENCE   6  (bases 1 to 2599)
  AUTHORS   Ye,H., Kelly,T.F., Samadani,U., Lim,L., Rubio,S., Overdier,D.G.,
            Roebuck,K.A. and Costa,R.H.
  TITLE     Hepatocyte nuclear factor 3/fork head homolog 11 is expressed in
            proliferating epithelial and mesenchymal cells of embryonic and
            adult tissues
  JOURNAL   Mol Cell Biol 17 (3), 1626-1641 (1997)
   PUBMED   9032290
REFERENCE   7  (bases 1 to 2599)
  AUTHORS   Hackett,B.P., Brody,S.L., Liang,M., Zeitz,I.D., Bruns,L.A. and
            Gitlin,J.D.
  TITLE     Primary structure of hepatocyte nuclear factor/forkhead homologue 4
            and characterization of gene expression in the developing
            respiratory and reproductive epithelium
  JOURNAL   Proc Natl Acad Sci U S A 92 (10), 4249-4253 (1995)
   PUBMED   7753791
REFERENCE   8  (bases 1 to 2599)
  AUTHORS   Avraham,K.B., Fletcher,C., Overdier,D.G., Clevidence,D.E., Lai,E.,
            Costa,R.H., Jenkins,N.A. and Copeland,N.G.
  TITLE     Murine chromosomal location of eight members of the hepatocyte
            nuclear factor 3/fork head winged helix family of transcription
            factors
  JOURNAL   Genomics 25 (2), 388-393 (1995)
   PUBMED   7789972
REFERENCE   9  (bases 1 to 2599)
  AUTHORS   Clevidence,D.E., Overdier,D.G., Peterson,R.S., Porcella,A., Ye,H.,
            Paulson,K.E. and Costa,R.H.
  TITLE     Members of the HNF-3/forkhead family of transcription factors
            exhibit distinct cellular expression patterns in lung and regulate
            the surfactant protein B promoter
  JOURNAL   Dev Biol 166 (1), 195-209 (1994)
   PUBMED   7958446
REFERENCE   10 (bases 1 to 2599)
  AUTHORS   Clevidence,D.E., Overdier,D.G., Tao,W., Qian,X., Pani,L., Lai,E.
            and Costa,R.H.
  TITLE     Identification of nine tissue-specific transcription factors of the
            hepatocyte nuclear factor 3/forkhead DNA-binding-domain family
  JOURNAL   Proc Natl Acad Sci U S A 90 (9), 3948-3952 (1993)
   PUBMED   7683413
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB871916.1, BC082543.1 and AK140847.1.
            
            [WARNING] On Jul 19, 2024 this sequence was replaced by
            NM_008240.4.
            
            On Apr 14, 2009 this sequence version replaced NM_008240.2.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC082543.1, AK140847.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN00849387
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-7                 BB871916.1         2-8
            8-1438              BC082543.1         1-1431
            1439-2575           AK140847.1         1376-2512
            2576-2599           BC082543.1         2569-2592
FEATURES             Location/Qualifiers
     source          1..2599
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 81.16 cM"
     gene            1..2599
                     /gene="Foxj1"
                     /gene_synonym="FKHL-13; HFH-4; Hfh4"
                     /note="forkhead box J1"
                     /db_xref="GeneID:15223"
                     /db_xref="MGI:MGI:1347474"
     exon            1..137
                     /gene="Foxj1"
                     /gene_synonym="FKHL-13; HFH-4; Hfh4"
                     /inference="alignment:Splign:2.1.0"
     exon            138..804
                     /gene="Foxj1"
                     /gene_synonym="FKHL-13; HFH-4; Hfh4"
                     /inference="alignment:Splign:2.1.0"
     CDS             307..1572
                     /gene="Foxj1"
                     /gene_synonym="FKHL-13; HFH-4; Hfh4"
                     /note="forkhead-related protein FKHL13; hepatocyte nuclear
                     factor 3 forkhead homolog 4; HNF-3/forkhead homolog 4"
                     /codon_start=1
                     /product="forkhead box protein J1"
                     /protein_id="NP_032266.3"
                     /db_xref="CCDS:CCDS25665.1"
                     /db_xref="GeneID:15223"
                     /db_xref="MGI:MGI:1347474"
                     /translation="MAESWLRLCGAGPGEEAGPEGGMEEPDALDDSLTSLQWLQEFSI
                     LNAKAPTLPPGGTDPHGYHQVPGLVAPGSPLAADPACLGQPHTPGKPTSSCTSRSAPP
                     GLQAPPPDDVDYATNPHVKPPYSYATLICMAMQASKATKITLSAIYKWITDNFCYFRH
                     ADPTWQNSIRHNLSLNKCFIKVPREKDEPGKGGFWRIDPQYAERLLSGAFKKRRLPPV
                     HIHPAFARQASQEPSAAPWGGPLTVNREAQQLLQEFEEATGEGGWGTGEGRLGHKRKQ
                     PLPKRVAKVLRPPSTLLLTQEEQGELEPLKGNFDWEAIFEAGALGEELSSLEGLELSP
                     PLSPSSHGDVDLTVHGRHINCPATWGPPAEQAADSLDFDETFLATSFLQHPWDESGSG
                     CLPPEPIFEAGDATLAADLQDWASVGAFL"
     exon            805..2578
                     /gene="Foxj1"
                     /gene_synonym="FKHL-13; HFH-4; Hfh4"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2539..2544
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Foxj1"
                     /gene_synonym="FKHL-13; HFH-4; Hfh4"
                     /note="hexamer: AATAAA"
     regulatory      2556..2561
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Foxj1"
                     /gene_synonym="FKHL-13; HFH-4; Hfh4"
                     /note="hexamer: AATAAA"
     polyA_site      2562
                     /gene="Foxj1"
                     /gene_synonym="FKHL-13; HFH-4; Hfh4"
     polyA_site      2578
                     /gene="Foxj1"
                     /gene_synonym="FKHL-13; HFH-4; Hfh4"
                     /note="major polyA site"
ORIGIN      
        1 agagaagcgc cgtcgggcga gggggggggg cgcgaagagg ggcgccagca cagccctcga
       61 gctggggaca gagaaccgcg ggaggtggga ggaacttctt ccagaacctt cctctggctg
      121 gctgcgctct gagccaggcc tcacattcgt gttcggagga ggcgaccccc tgggtcgcag
      181 aatggaagtg agtgttctgg agactgtgta actggagtct gggttaccag cgggccagag
      241 agcgcggcgg gccactccgg ctcagcctgt ggatgttgac cgccccttcg gagagtcccc
      301 gcagacatgg cggagagctg gctgcgcctc tgcggagcgg gtcccggaga ggaagccggg
      361 ccggagggcg gcatggagga gccggacgcc ctggatgaca gcctgaccag cctgcaatgg
      421 ctgcaggaat tctccattct caacgccaag gctcccactc ttcccccagg aggcacagac
      481 ccccacggct accaccaagt gccgggcttg gtggcgcccg ggtcaccgct ggcggcagac
      541 cctgcctgcc ttgggcagcc gcacacaccc ggcaagccca catcgtcgtg cacatctcga
      601 agcgcgcccc cggggctgca ggccccgccc cctgacgacg tggactatgc caccaaccca
      661 cacgtgaagc caccctactc ctatgccact ctcatctgca tggccatgca agccagcaag
      721 gccaccaaga tcactctgtc ggccatctac aagtggatca cggacaactt ctgctacttc
      781 cgccatgcag accccacctg gcagaattcc atccgccaca acctgtcctt gaacaagtgc
      841 ttcatcaaag tgcctcggga gaaggatgag cccggcaagg ggggtttctg gcgcatcgac
      901 ccccagtacg cagagcgcct gctcagtggg gccttcaaga agcggaggct gcccccagtc
      961 cacatccacc ctgcctttgc ccgccaggcc tcccaggaac ctagcgctgc cccctggggt
     1021 gggcctctga ccgtgaacag ggaggcccag cagctgcttc aggagtttga ggaggccaca
     1081 ggggaggggg gctggggcac aggagagggc aggctggggc ataagcgaaa gcagccgctg
     1141 cccaagaggg tggccaaggt cctgcggcct cccagcacct tactgctgac ccaggaggag
     1201 cagggtgagc tggaaccact caaaggtaac tttgactggg aggccatctt tgaggctggc
     1261 gcactggggg aggagctgag ctcactggag ggtctggagc taagcccccc gctaagcccc
     1321 agctcacatg gagatgtgga tcttacagtc catggccggc acatcaactg ccctgctacc
     1381 tggggacctc cagcggagca ggctgctgac agcctggact ttgatgagac cttcttggcc
     1441 acatccttcc tacagcatcc ctgggatgag agtggtagtg gctgcctgcc cccagaaccc
     1501 atctttgaag caggggatgc caccctggcc gctgacctgc aggactgggc cagtgtgggt
     1561 gccttcttgt aaaaggtcag gccccacccc atctccggac agtgctcaag tcagggccca
     1621 gaactgcctc ccaagacagg cccgtggaca tctcagcacc caggcaggga ctgggccagg
     1681 tctctgaagg ccacactgct gccagctggg gatgtcctca tatccaagcc cagaagactg
     1741 ggaactgggg accctgcccc tcccccatca gcaaccccca tacacacagt gtttcatcca
     1801 cccatgttcc ctcaagccca aggattggca aaagcacccc tgcccctgcc tgccccccat
     1861 ccccaccctt gcactctgag agctgaagcc cagaagggtc ctaccaggcc agggaggaac
     1921 tgaacagggc cctcaccaaa gcttcgcctc acccacttct gctgcttctc tgggtctcta
     1981 cccagagaaa gttcccaggt acaacaaacg ctcattagat gataacaaat taattcccag
     2041 gaggcccctc ccggcagagc tttcccaggg gccctggcag ccttggccag ggagagagag
     2101 tgagggcaag agactgggga agggaaaaga aaggaggcag aaatccggtg ggggcagcga
     2161 agtggggcga aatggtctct aagcccgcta gggcctttcc ctggtccatc acctgcacaa
     2221 gggaggctac aaaccttcca gcctgacttg aggctaagag catcaggaag atggggtgtg
     2281 gggtggttgg gtcaggggca gccaagctgc tagggggtgg ggggagagac taatatagtg
     2341 aatgtagtta tagctaagac ttaactgggg aaaggatgcc cggctcactg ggaacactgg
     2401 ggccaggaag gggacaagcc ctaggcccct gtctatacta gggggaccag gccttgctcc
     2461 accttgaccc ctggagctgg gacctgaatc taccctccac gtggagcaat ttaacctttt
     2521 tcatgtaaag ttctttacaa taaaatgttt ttcaaaataa aatttaaaaa aatctgaaaa
     2581 aaaaaaaaaa aaaaaaaaa
//
