LOCUS       NM_177075               2263 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus fibronectin type III domain containing 9 (Fndc9),
            mRNA.
ACCESSION   NM_177075
VERSION     NM_177075.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2263)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2263)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY728197.1, BC104395.1 and AL713958.11.
            
            [WARNING] On May 10, 2024 this sequence was replaced by
            NM_177075.5.
            
            On Jul 18, 2009 this sequence version replaced NM_177075.3.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK081240.1, BY728197.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849376, SAMN00849384
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-26                BY728197.1         2-27
            27-921              BC104395.1         1-895
            922-2263            AL713958.11        77870-79211
FEATURES             Location/Qualifiers
     source          1..2263
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 27.65 cM"
     gene            1..2263
                     /gene="Fndc9"
                     /gene_synonym="C030019I05Rik"
                     /note="fibronectin type III domain containing 9"
                     /db_xref="GeneID:320116"
                     /db_xref="MGI:MGI:2443410"
     exon            1..40
                     /gene="Fndc9"
                     /gene_synonym="C030019I05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            41..2263
                     /gene="Fndc9"
                     /gene_synonym="C030019I05Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             48..728
                     /gene="Fndc9"
                     /gene_synonym="C030019I05Rik"
                     /note="fibronectin type-III domain-containing protein
                     C5orf40 homolog"
                     /codon_start=1
                     /product="fibronectin type III domain-containing protein
                     9"
                     /protein_id="NP_796049.1"
                     /db_xref="CCDS:CCDS24574.1"
                     /db_xref="GeneID:320116"
                     /db_xref="MGI:MGI:2443410"
                     /translation="MNIEVGNVSHTGAIISWSPSEPCLEDYYHIMYRPNWNSIFSGYL
                     RYNFHHEEKVPRTITSVALEHLAPSTLYFLCISCKKAAFPYSHYCTMFHTLDKSPLAA
                     GGSLVDPQISLWVLMAILLACFTAVLAFICLQFWCLRCHEPRWSYRAGQMEEANGLVR
                     WPEETPALGQREEDLQGFPLEELPRKNSGARAKAEPEAEAIQDALEVVALAREIGNQP
                     AILPHYRE"
ORIGIN      
        1 agaggggaga cgtctatacc agacacactg cgagcatcag acccgggatg aacattgagg
       61 ttgggaacgt gtctcacaca ggagccatca tctcctggtc accctcggag ccctgcttgg
      121 aggactatta ccatattatg tacaggccca actggaacag tatcttctcc ggatacctgc
      181 gctataactt ccatcacgag gagaaggtgc ctcgaaccat cacctctgtg gcattggaac
      241 acctcgctcc ttccactctc tacttcctct gtatcagctg caagaaggct gccttcccgt
      301 atagtcacta ctgtaccatg ttccacaccc tggataagag tccgctggct gccgggggct
      361 ccctggtgga cccccagatt tctctttggg tgctgatggc catcctgctg gcctgcttca
      421 ctgctgtgct ggccttcatc tgcctccagt tctggtgcct ccgctgtcac gaacctcggt
      481 ggtcttacag agccggccaa atggaggaag ccaatgggtt ggtaagatgg cccgaggaga
      541 ccccagctct tggtcagagg gaagaagacc tgcaggggtt ccccctggag gaactgccac
      601 gaaagaactc aggggccagg gccaaagctg aaccagaggc tgaagccatc caggatgcct
      661 tagaggtggt ggccttagct agagagattg gtaaccaacc ggccatactg cctcactata
      721 gggagtgagc aacagtaagg agatgccccg ttttccaaag cttaaattgc tctccatagt
      781 tggtcctatt tgtgaaaatt tgtctataga cctcccactt ctgtcctctc acatgtcagt
      841 gctgtataga tgtcacatga caacggtccc caagttggac aacacagacc ctcaaggtac
      901 atcaggggca aacaaggcat tgtttcagta ttgtctattt ggaggcctag caaagaacgg
      961 aagactctgt ttcagtatta aaatcaacca tggctatgtg atggacagtg aaagtagcta
     1021 gacctgaatc tggcacagta cttggaagaa atgagactag cattaacatc aatacaaatg
     1081 tctttctttt atgtaagcta aggtttgaaa gagaactggg aagggaaacc agatttttag
     1141 tttgtgaccc atgtctctaa gcctcttgaa atgacgtctg caagacatct ccactcctcc
     1201 ctccctccct cccctccttc ctttgttttc ttctgtgtat ggggatacag tctcccataa
     1261 cagtcttggc taactggaac ttgccacgta gaccagactg tccttgaact cagagcagtc
     1321 ctgctgcctc agaccctcag tgctaggaca ggcgagtgct accacccctg gatgatgagc
     1381 ctctctaggt ttgagaaatt accttaaaca gtttgacttc tctggagaag acacccatcc
     1441 tctctagcat cctcctccta cacagtaggt gccccagcca gagcctctct ggggttcacc
     1501 acacttctaa agctctcact ccaccatagt catctcggct tatctctgct gagtttaaaa
     1561 atgggatcaa aggtggctgg gttttgttcc attagcaaga aaatcactgg tgtctctcgc
     1621 cccccccccc ccatccccag tgggagacat gtttctttat tccttctaca tgagccccta
     1681 ttgtaagggt taaattgtac atattgtgac cttggtggga cttgttggaa actattccct
     1741 ccacaactgt ggaaatgagg gtgtgggtgg gtgtacgtca tgtctccatt cccgatggac
     1801 accgagcatg gacaacctaa cccatgtctg gcctacaagg ggtatataag aaatgccatt
     1861 gagtgaatgg gcagaaggac cgaggaatta gaatggaccc agtggcgaca atcacttgga
     1921 atgaagatgt gcacatgtga ggaaacaaaa taagtcacat gaggtagagg agaccttcct
     1981 ctcagaaata gttctagaca cctacaatgg cctttaagct ctgtctgtaa agctctggaa
     2041 cttacagagc ccagaatccc agaatcacct gatgatgtta tgataaatca accaagaaat
     2101 ggaagaaact gggaggccac aaggagactc cccatgtccc cagttaccca cccacctcag
     2161 cacattactc acccctcacc tcagctcctg cccagctccc tctgtccaga atgttctacc
     2221 ccatccctgc tagctgtgaa ctaataaagt tgaatggact tgc
//
