LOCUS       NM_001007580            4830 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus fibronectin type III domain containing 3C1 (Fndc3c1),
            mRNA.
ACCESSION   NM_001007580 XM_285516
VERSION     NM_001007580.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4830)
  AUTHORS   Liu,J., Chanumolu,S.K., White,K.M., Albahrani,M., Otu,H.H. and
            Nawshad,A.
  TITLE     Transcriptional analysis of cleft palate in TGFbeta3 mutant mice
  JOURNAL   Sci Rep 10 (1), 14940 (2020)
   PUBMED   32913205
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4830)
  AUTHORS   Lewandowski,J.P., Du,F., Zhang,S., Powell,M.B., Falkenstein,K.N.,
            Ji,H. and Vokes,S.A.
  TITLE     Spatiotemporal regulation of GLI target genes in the mammalian limb
            bud
  JOURNAL   Dev Biol 406 (1), 92-103 (2015)
   PUBMED   26238476
REFERENCE   3  (bases 1 to 4830)
  AUTHORS   Pearton,D.J., Smith,C.S., Redgate,E., van Leeuwen,J., Donnison,M.
            and Pfeffer,P.L.
  TITLE     Elf5 counteracts precocious trophoblast differentiation by
            maintaining Sox2 and 3 and inhibiting Hand1 expression
  JOURNAL   Dev Biol 392 (2), 344-357 (2014)
   PUBMED   24859262
REFERENCE   4  (bases 1 to 4830)
  AUTHORS   Budry,L., Balsalobre,A., Gauthier,Y., Khetchoumian,K., L'honore,A.,
            Vallette,S., Brue,T., Figarella-Branger,D., Meij,B. and Drouin,J.
  TITLE     The selector gene Pax7 dictates alternate pituitary cell fates
            through its pioneer action on chromatin remodeling
  JOURNAL   Genes Dev 26 (20), 2299-2310 (2012)
   PUBMED   23070814
REFERENCE   5  (bases 1 to 4830)
  AUTHORS   Hou,J., Charters,A.M., Lee,S.C., Zhao,Y., Wu,M.K., Jones,S.J.,
            Marra,M.A. and Hoodless,P.A.
  TITLE     A systematic screen for genes expressed in definitive endoderm by
            Serial Analysis of Gene Expression (SAGE)
  JOURNAL   BMC Dev Biol 7, 92 (2007)
   PUBMED   17683524
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 4830)
  AUTHORS   Obholz,K.L., Akopyan,A., Waymire,K.G. and MacGregor,G.R.
  TITLE     FNDC3A is required for adhesion between spermatids and Sertoli
            cells
  JOURNAL   Dev Biol 298 (2), 498-513 (2006)
   PUBMED   16904100
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC076625.1.
            
            On Nov 29, 2004 this sequence version replaced XM_285516.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC076625.1, BC085176.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164142 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4830
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 47.36 cM"
     gene            1..4830
                     /gene="Fndc3c1"
                     /gene_synonym="Fndc3c; Gm784"
                     /note="fibronectin type III domain containing 3C1"
                     /db_xref="GeneID:333564"
                     /db_xref="MGI:MGI:2685630"
     exon            1..285
                     /gene="Fndc3c1"
                     /gene_synonym="Fndc3c; Gm784"
                     /inference="alignment:Splign:2.1.0"
     exon            286..402
                     /gene="Fndc3c1"
                     /gene_synonym="Fndc3c; Gm784"
                     /inference="alignment:Splign:2.1.0"
     exon            403..516
                     /gene="Fndc3c1"
                     /gene_synonym="Fndc3c; Gm784"
                     /inference="alignment:Splign:2.1.0"
     exon            517..592
                     /gene="Fndc3c1"
                     /gene_synonym="Fndc3c; Gm784"
                     /inference="alignment:Splign:2.1.0"
     exon            593..669
                     /gene="Fndc3c1"
                     /gene_synonym="Fndc3c; Gm784"
                     /inference="alignment:Splign:2.1.0"
     exon            670..940
                     /gene="Fndc3c1"
                     /gene_synonym="Fndc3c; Gm784"
                     /inference="alignment:Splign:2.1.0"
     exon            941..1645
                     /gene="Fndc3c1"
                     /gene_synonym="Fndc3c; Gm784"
                     /inference="alignment:Splign:2.1.0"
     exon            1646..1701
                     /gene="Fndc3c1"
                     /gene_synonym="Fndc3c; Gm784"
                     /inference="alignment:Splign:2.1.0"
     exon            1702..1841
                     /gene="Fndc3c1"
                     /gene_synonym="Fndc3c; Gm784"
                     /inference="alignment:Splign:2.1.0"
     exon            1842..1901
                     /gene="Fndc3c1"
                     /gene_synonym="Fndc3c; Gm784"
                     /inference="alignment:Splign:2.1.0"
     exon            1902..2040
                     /gene="Fndc3c1"
                     /gene_synonym="Fndc3c; Gm784"
                     /inference="alignment:Splign:2.1.0"
     exon            2041..2094
                     /gene="Fndc3c1"
                     /gene_synonym="Fndc3c; Gm784"
                     /inference="alignment:Splign:2.1.0"
     exon            2095..2216
                     /gene="Fndc3c1"
                     /gene_synonym="Fndc3c; Gm784"
                     /inference="alignment:Splign:2.1.0"
     exon            2217..2391
                     /gene="Fndc3c1"
                     /gene_synonym="Fndc3c; Gm784"
                     /inference="alignment:Splign:2.1.0"
     exon            2392..2478
                     /gene="Fndc3c1"
                     /gene_synonym="Fndc3c; Gm784"
                     /inference="alignment:Splign:2.1.0"
     exon            2479..2617
                     /gene="Fndc3c1"
                     /gene_synonym="Fndc3c; Gm784"
                     /inference="alignment:Splign:2.1.0"
     exon            2618..2689
                     /gene="Fndc3c1"
                     /gene_synonym="Fndc3c; Gm784"
                     /inference="alignment:Splign:2.1.0"
     exon            2690..2808
                     /gene="Fndc3c1"
                     /gene_synonym="Fndc3c; Gm784"
                     /inference="alignment:Splign:2.1.0"
     exon            2809..2911
                     /gene="Fndc3c1"
                     /gene_synonym="Fndc3c; Gm784"
                     /inference="alignment:Splign:2.1.0"
     exon            2912..3018
                     /gene="Fndc3c1"
                     /gene_synonym="Fndc3c; Gm784"
                     /inference="alignment:Splign:2.1.0"
     exon            3019..3132
                     /gene="Fndc3c1"
                     /gene_synonym="Fndc3c; Gm784"
                     /inference="alignment:Splign:2.1.0"
     exon            3133..3282
                     /gene="Fndc3c1"
                     /gene_synonym="Fndc3c; Gm784"
                     /inference="alignment:Splign:2.1.0"
     exon            3283..3557
                     /gene="Fndc3c1"
                     /gene_synonym="Fndc3c; Gm784"
                     /inference="alignment:Splign:2.1.0"
     exon            3558..3770
                     /gene="Fndc3c1"
                     /gene_synonym="Fndc3c; Gm784"
                     /inference="alignment:Splign:2.1.0"
     exon            3771..3937
                     /gene="Fndc3c1"
                     /gene_synonym="Fndc3c; Gm784"
                     /inference="alignment:Splign:2.1.0"
     exon            3938..4059
                     /gene="Fndc3c1"
                     /gene_synonym="Fndc3c; Gm784"
                     /inference="alignment:Splign:2.1.0"
     exon            4060..4814
                     /gene="Fndc3c1"
                     /gene_synonym="Fndc3c; Gm784"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4793..4798
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fndc3c1"
                     /gene_synonym="Fndc3c; Gm784"
                     /note="hexamer: AATAAA"
     polyA_site      4814
                     /gene="Fndc3c1"
                     /gene_synonym="Fndc3c; Gm784"
                     /note="major polyA site"
ORIGIN      
        1 tgtaaaaggc gcggtcccct ccagccattg ggtgccgcat ggaccttcta ctgctctcct
       61 gtgcctcgcg tccggtggcc tgccccatag gtcccgccag ctccctttct tcgcttagct
      121 tcacttgctt gtctttgtat ttgtgactgt tttccagccc ggtcttttac ttttcttaat
      181 cttgaatcgg tcactgtcgc cggatctctt gctatctgga gtcagatcga gaagtacctg
      241 aatgaagagc gaggcttttg gagaagcatt tttgtatctg cttagaacta tcacttaatg
      301 tgaaagtcaa tccttttaga gtcaatggaa catcaacttt cacccattct ttctgaaata
      361 cctccaacag tgccagtcat caatggagag cccatgtgcc ctgtggagaa ttatcttctg
      421 gaccctaatg ccatggcggt gtgttctaat cattcacaga ttatgactca gcataagatg
      481 tataacacct ggacgtgtcc ccaatactgg tctcaaattg tatttgttca agttaaccct
      541 ggagaaatcc ttaccataaa ggctgatgat ggctccattc agaacattca aggtcctgca
      601 gatgtacctc tgatagcacc aactggcaat ttgccaccaa tataccttcc tcctggttac
      661 atgtctcagg tggtggaaga aaatggaatt caaaaaattg tcattgtacc tcagacactt
      721 gactaccatg tgcccatgac tgctcctgtg cagcagccct ttgtagcagc accattgctc
      781 acatacccac aggcccctca acttctgtat tctccagttc aaggggaaat cccagtacct
      841 tcttacatac aagaaccaca gcagatcccg ccactgccac ttctaccccc actgccactg
      901 ctcccaccag cggcaacatt tctattccag gaacatcttg aaacctatcc tcaaggaaga
      961 gtgaatcata accaatttga tgagaggact gtaaagattg gagaatattc aaagaagaag
     1021 ataagagatc gccaacttgg tgaacacaag atcaactcca cttttagtga caccactttg
     1081 cttctcaaca aagacattga catgcctgct cctcctgata gtctctgtcc ttacactgtg
     1141 gatactgctc caggcaccaa cactgataac agtacttcag acacttactc tctgaatact
     1201 gtcttaaaca cttgcactat tgacagtgct ccaagaaaca tggctgacaa tattccagac
     1261 actaacacta ctgacacaat cactagttct tctgctcata ccccaagcat ttctacctca
     1321 aatgctactt tttgctctga caacaataac aatattacag actcttccat aagtaattac
     1381 aatcaagtca cctatgatga aactcacaaa ccaccagatg ctaagagtat tccaagctgt
     1441 acttcccaaa gtgctagcaa cccttctgtc tctgaaaatg ctcataaccc ctcctcgata
     1501 aatgatggcc tcagaccttc tgatgttgcc agcatttctg aaaatgatca tgaagagaca
     1561 gaggctaaca tgggagctgg agacaataag cagatattag gtgaaaacca aaagaagagt
     1621 cagtcgtcaa atgcatcact gaaagaacac aatacagagg acagaacaca accaggttgt
     1681 ttcaacattg aaaaacctgt ggtttctaat attcaaaccc gatctgctac tgtttcatgg
     1741 actcggaaga gtaatgaaaa atatgatatt aattcttcta tgacacatga attggcactg
     1801 tccagcaatg gtaaaaatgg aacctataaa aatatttata ctggtaatgg cgttactgtg
     1861 gtcctacatg atctacaacc ttgcatggtc tactttttaa gagtaacaac cataagaaat
     1921 gcagaacaca gaagtgtgtc tgaagtggtt agcttcacaa caccaggctg tgaaccagac
     1981 cctcctcttg cacccacact gatcagcaga accaagaaca gcctgagttt acaatggaaa
     2041 gcttccaatg ataatggatc caaaataagc agctttcttt tggaatggga tgagggtaaa
     2101 ggtgaagact tcaaaagttg ttacagtgga cgcctgaaac agcacaagct ttttaaactg
     2161 aacccttcaa caaagtattc cttcagatta gctgccaaaa atgactttgg ctgcagcaat
     2221 ttcagtgaaa ccgcagtctt ctatacatca ggaaagaccc ctccagcacc actgccacct
     2281 aagttgaaag aagcaggaat ctacagtttg tctctagagt ggtgtgcccc aacaaaccca
     2341 aacccaaatg acactcttac ttatgtgcta gagatggagg aagcaaaatc tggattaggt
     2401 tttaaaccta aatacaatgg agaagacctc acctgcacca taagaaatct tcaaagaaac
     2461 actatgtaca agtttcggat ttttgcctac aatctggaag gaaggagcaa ccccagtgga
     2521 gaagtaaaat atactactcg tccagctagg cctggatgcc ctaataaacc atatgtagtg
     2581 ggaacgatcc atgcacacca agtgacaatt ggatgggact tacccaaaga caacggtgga
     2641 atgaacatct caagttacag cctagaagtt tgtgaaaatt cagatagtgc gaatctctgg
     2701 aaaataatct acagtggtac tcgacaggaa tttctgtatg atgacctcca agcagccacc
     2761 acatataaac tgagagtctt ttgcacgtca cctgcaggcc aaagccgtcc ttcagatgta
     2821 ttgacaattc agacgcctac tcttcctccc gagtcttgcc gttcacagcc cttacgtggt
     2881 aaaaccaaga gcaaggatgc caaccttcct gacaatcgtt ctgttaatgg gaagccggaa
     2941 gcacatgtgc gtggcaaaaa agcaaaaggt cctcatcagg acagaaaggt gcaccccagc
     3001 tctgaaaaga aatgtgcact tggatctcag tcaatggagt gtggatctgt accagcccgg
     3061 caccctcctt ctcagtgtgg tacacctgtg ctaacctgca agggtccaac ctgtgttatt
     3121 gtcagttggg aaattcctaa atgcaatggt gctgaaatca ttgattaccg actgcaatgg
     3181 ggacaagttg aagattccat gcatttgatt tacactggcc cttgcttgcg ctatgaagtt
     3241 aaaggtcttg ttcctgcaac cacatacttt tgcagagtac aggctgtgaa tatagttggg
     3301 gttggaatgt ttggaggaac tgcaaaagtg actacacctg gaactgtccc agcaatggtt
     3361 ccagtattaa aagaagttga aagcaaagtg cctgccaagc tgtcatcaac ttgcatagct
     3421 atccgctggg aggagccaga ctgtcatggc tctcctatca ctggatataa cattgaatat
     3481 ggagataaaa aagttgtgac tgtcaaaaga ataaccgagt atgttctgaa agatctacaa
     3541 cctaatacta catacagaat cagaattcaa gctatcaatc attatggact aagccctttt
     3601 agcccatcaa taagatgcaa aaccaaacca ctaccaccag agcctccaca gcttaattgt
     3661 gtggtctatg gacaccagag tctcagactc aaatggggca ctgtctcaag caaaaaaaca
     3721 cttgccaatt ttatcaacta caacgtacta atggaagatc gatctggcag attttctgtc
     3781 atttaccgtg ggccggatgt gactcacaaa gtgcaaaaat tgagtgagta tacagaatac
     3841 aagtttaaaa tccaggcatg taatgaagct ggggaaggac cagagtctga catctacact
     3901 ttcactacta caaagtcccc acccactgca ctgaaagcac caaaagtaca tccactgaat
     3961 aacaactctt gtgagatcaa atgggagtct ttggagccaa ttaaaggtga tcccattgtt
     4021 tattgtcttc aagtcaccac cgggaaaaag gctaatcaga tttacaaagg accaaacact
     4081 tccttttcct tttccaacta tcatgcaaat tcacgctacc gcttcaaggt ctgtgcagga
     4141 cgccgatatg aaacctccaa tggtcttcaa gagctgtggg ggccatatag tcccagtgct
     4201 cttttctcaa cttataagca tcattcaggg catggcaaag gcagtgggag taaaggaaaa
     4261 ggcaaccata atgacaaagg tgaaaagtgc aagacagaga tgagtgatga taccttcgtt
     4321 cttacccttc tgatagggtt cgcacttatt gcagttttgt gtgctgttgc cgttcaatac
     4381 ctcctgatca attagtctgt tcttttaggg aaaaaaggaa attatatctg gtttagaaaa
     4441 ctttagatac atcttaatgc acatgcttat atttaaggct tattgataga aagtagtaac
     4501 agaaaaaaac aaaacactat cttcattttt acaaactttt gtgacagtag aacagagatt
     4561 tctaaggaaa catatgtacc ataaatttta ctattttcat tgttctgtga aaaaaacatt
     4621 gccttcttat gtaaaattca gtcatctgtg gaaactattt tctgccttta cttgtcaagt
     4681 taatattttc aaaaaatttt atgactatga tataacaaca gtattttgga atttttttag
     4741 aacaaaataa gaaatattgc ttctgtctgt cctgttaatg tccatatgaa gtaataaaaa
     4801 atgtatctac aaaaaaaaaa aaaaaaaaaa
//
