LOCUS       NM_001379472            1157 bp    mRNA    linear   ROD 09-JUN-2024
DEFINITION  Mus musculus fibronectin type III domain containing 11 (Fndc11),
            transcript variant 2, mRNA.
ACCESSION   NM_001379472 XM_006500667
VERSION     NM_001379472.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1157)
  AUTHORS   Miyata,H., Castaneda,J.M., Fujihara,Y., Yu,Z., Archambeault,D.R.,
            Isotani,A., Kiyozumi,D., Kriseman,M.L., Mashiko,D., Matsumura,T.,
            Matzuk,R.M., Mori,M., Noda,T., Oji,A., Okabe,M.,
            Prunskaite-Hyyrylainen,R., Ramirez-Solis,R., Satouh,Y., Zhang,Q.,
            Ikawa,M. and Matzuk,M.M.
  TITLE     Genome engineering uncovers 54 evolutionarily conserved and
            testis-enriched genes that are not required for male fertility in
            mice
  JOURNAL   Proc Natl Acad Sci U S A 113 (28), 7704-7710 (2016)
   PUBMED   27357688
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL845506.6.
            
            On Apr 3, 2020 this sequence version replaced XM_006500667.4.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 1. Variants 1 and 2 both encode the same isoform (a).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK006395.1, BY706455.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-101               AL845506.6         6598-6698
            102-1157            AL845506.6         7958-9013
FEATURES             Location/Qualifiers
     source          1..1157
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 103.63 cM"
     gene            1..1157
                     /gene="Fndc11"
                     /gene_synonym="1700026M20Rik"
                     /note="fibronectin type III domain containing 11"
                     /db_xref="GeneID:332713"
                     /db_xref="MGI:MGI:3051572"
     exon            1..101
                     /gene="Fndc11"
                     /gene_synonym="1700026M20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            102..1157
                     /gene="Fndc11"
                     /gene_synonym="1700026M20Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             112..1110
                     /gene="Fndc11"
                     /gene_synonym="1700026M20Rik"
                     /note="isoform a is encoded by transcript variant 2;
                     fibronectin type III domain-containing protein 11"
                     /codon_start=1
                     /product="fibronectin type III domain-containing protein
                     11 isoform a"
                     /protein_id="NP_001366401.1"
                     /db_xref="GeneID:332713"
                     /db_xref="MGI:MGI:3051572"
                     /translation="MNFQVTGLALDKMKLDSPHSFLDAEEVEEAEDQQLLEPEAWRTY
                     MERRNVLREFLTTDLSPQLLKRHHARMQLLKKCSYYIEILPKHLALGDQNPLVLPNTM
                     FQLIDPWKFQRMKKVGTAQTKIQLLLLGDLLEQLDHGRAALDALLEAPDPRPFLAGWG
                     LVEQQLADLSVVMDNFLAMMVPGHLHVKHRLVSDIGATKIPHIRLMLSTKMPVMFDRK
                     ESVAHQDWVSLRWFVTIQPAAPEQYELRFKLLEPRTQQECTQCGIVPVAACTFDVHNL
                     LPNRTYKFTIKRAESYTLVYEPWRDSLTLQTTPGPPEGPAPRLGKPSLPLTTPSER"
     regulatory      1131..1136
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fndc11"
                     /gene_synonym="1700026M20Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1157
                     /gene="Fndc11"
                     /gene_synonym="1700026M20Rik"
                     /note="major polyA site"
ORIGIN      
        1 agtgcaccct gcagctctgg ctgggctccg cacaggaagc gggcggccag gcacttgcag
       61 agcggggctg gggctcacgg aggtgatccg gaagaggagt gctcccagac aatgaacttc
      121 caggtgacag gcctggccct ggacaaaatg aagctggaca gtccacattc cttcctggac
      181 gcagaggagg tggaggaggc agaggaccag cagctgctgg agccagaggc ttggaggaca
      241 tacatggagc gccgcaacgt gctgcgtgag ttcctgacca cagacctgag cccccagttg
      301 ctcaagcgcc accatgcccg catgcagctg ctcaagaagt gctcctacta cattgagatt
      361 ctccctaagc acctggccct gggtgaccag aacccgctgg tgctacctaa caccatgttc
      421 cagctcattg atccctggaa gttccagcgc atgaagaagg tgggcacagc acagaccaag
      481 atccagctcc tcctgcttgg ggacctgctg gagcagctgg accatggccg ggcagcactg
      541 gatgccctac ttgaggcccc tgacccacgg cccttcctgg caggctgggg gcttgtggaa
      601 cagcagttgg cagacctatc agttgtcatg gacaacttcc tggccatgat ggtaccagga
      661 cacctgcatg tcaagcaccg cctggtatct gacattggag ccaccaaaat cccacacatc
      721 cggcttatgc tgagcacgaa gatgccagtt atgttcgacc ggaaggagtc agtggcgcat
      781 caggactggg tcagcctgcg ctggtttgta accatccagc cggcagcacc agagcagtat
      841 gaactgcgct tcaagctgtt ggagcccagg acacaacagg agtgtacaca gtgtggcata
      901 gtccctgtgg ctgcctgcac ctttgatgtc cacaacctgt tgcccaaccg tacctacaag
      961 ttcactatca agagggcaga aagctacacc ctggtctatg agccctggcg ggacagcctc
     1021 accttgcaga ccacgccagg accccctgag gggcctgccc ccaggctggg taagcccagc
     1081 ctgcccctga ccacaccttc tgagagatga ttttctaata tttatccact aataaagagg
     1141 agtatacaca caccaaa
//
