LOCUS       NM_174993                916 bp    mRNA    linear   ROD 12-JUN-2024
DEFINITION  Mus musculus Fmr1 neighbor (Fmr1nb), transcript variant 1, mRNA.
ACCESSION   NM_174993 XM_923604
VERSION     NM_174993.3
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 916)
  AUTHORS   Morimoto,K., Numata,K., Daitoku,Y., Hamada,Y., Kobayashi,K.,
            Kato,K., Suzuki,H., Ayabe,S., Yoshiki,A., Takahashi,S., Murata,K.,
            Mizuno,S. and Sugiyama,F.
  TITLE     Reverse genetics reveals single gene of every candidate on Hybrid
            sterility, X Chromosome QTL 2 (Hstx2) are dispensable for
            spermatogenesis
  JOURNAL   Sci Rep 10 (1), 9060 (2020)
   PUBMED   32493902
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 916)
  AUTHORS   Miyata,H., Castaneda,J.M., Fujihara,Y., Yu,Z., Archambeault,D.R.,
            Isotani,A., Kiyozumi,D., Kriseman,M.L., Mashiko,D., Matsumura,T.,
            Matzuk,R.M., Mori,M., Noda,T., Oji,A., Okabe,M.,
            Prunskaite-Hyyrylainen,R., Ramirez-Solis,R., Satouh,Y., Zhang,Q.,
            Ikawa,M. and Matzuk,M.M.
  TITLE     Genome engineering uncovers 54 evolutionarily conserved and
            testis-enriched genes that are not required for male fertility in
            mice
  JOURNAL   Proc Natl Acad Sci U S A 113 (28), 7704-7710 (2016)
   PUBMED   27357688
REFERENCE   3  (bases 1 to 916)
  AUTHORS   Lee,S.Y., Obata,Y., Yoshida,M., Stockert,E., Williamson,B.,
            Jungbluth,A.A., Chen,Y.T., Old,L.J. and Scanlan,M.J.
  TITLE     Immunomic analysis of human sarcoma
  JOURNAL   Proc Natl Acad Sci U S A 100 (5), 2651-2656 (2003)
   PUBMED   12601173
REFERENCE   4  (bases 1 to 916)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC055766.31.
            
            On Jan 28, 2022 this sequence version replaced NM_174993.2.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and it encodes the longest protein (isoform 1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC145139.1, AY214130.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN01164134
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-378               AC055766.31        95072-95449         c
            379-456             AC055766.31        93294-93371         c
            457-594             AC055766.31        88210-88347         c
            595-691             AC055766.31        85162-85258         c
            692-780             AC055766.31        53610-53698         c
            781-916             AC055766.31        52742-52877         c
FEATURES             Location/Qualifiers
     source          1..916
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 34.86 cM"
     gene            1..916
                     /gene="Fmr1nb"
                     /gene_synonym="3830422N12Rik; NY-SAR-35; NYSAR35"
                     /note="Fmr1 neighbor"
                     /db_xref="GeneID:207854"
                     /db_xref="MGI:MGI:2672032"
     exon            1..378
                     /gene="Fmr1nb"
                     /gene_synonym="3830422N12Rik; NY-SAR-35; NYSAR35"
                     /inference="alignment:Splign:2.1.0"
     CDS             81..797
                     /gene="Fmr1nb"
                     /gene_synonym="3830422N12Rik; NY-SAR-35; NYSAR35"
                     /note="isoform 1 is encoded by transcript variant 1;
                     protein mNY-SAR-35; fmr1 neighbor protein"
                     /codon_start=1
                     /product="fmr1 neighbor protein isoform 1"
                     /protein_id="NP_778158.2"
                     /db_xref="CCDS:CCDS30172.1"
                     /db_xref="GeneID:207854"
                     /db_xref="MGI:MGI:2672032"
                     /translation="MPSDRRPSQRRNRSKSRDYRGARSKVTRADTRNRDDTLALSMYQ
                     GPPSADQGNNMADAPRFGFWTSVSQCLQYLWARRHLGLLLLLFWTLVILFRPVNTAKL
                     PILAEAAELEPPLGNMLDFFFPTTCIIRDNQVVVACNNQPYLSESECLKSKCCSSTSG
                     TIIKCYAPVRDKPTQVLRVFGLAAISILVLGFLPMCCCSMCWRRKRMNRMLKVLKKQK
                     SKGKKPKGRKASEERALLSH"
     exon            379..456
                     /gene="Fmr1nb"
                     /gene_synonym="3830422N12Rik; NY-SAR-35; NYSAR35"
                     /inference="alignment:Splign:2.1.0"
     exon            457..594
                     /gene="Fmr1nb"
                     /gene_synonym="3830422N12Rik; NY-SAR-35; NYSAR35"
                     /inference="alignment:Splign:2.1.0"
     exon            595..691
                     /gene="Fmr1nb"
                     /gene_synonym="3830422N12Rik; NY-SAR-35; NYSAR35"
                     /inference="alignment:Splign:2.1.0"
     exon            692..780
                     /gene="Fmr1nb"
                     /gene_synonym="3830422N12Rik; NY-SAR-35; NYSAR35"
                     /inference="alignment:Splign:2.1.0"
     exon            781..916
                     /gene="Fmr1nb"
                     /gene_synonym="3830422N12Rik; NY-SAR-35; NYSAR35"
                     /inference="alignment:Splign:2.1.0"
     regulatory      891..896
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fmr1nb"
                     /gene_synonym="3830422N12Rik; NY-SAR-35; NYSAR35"
                     /note="hexamer: ATTAAA"
     polyA_site      916
                     /gene="Fmr1nb"
                     /gene_synonym="3830422N12Rik; NY-SAR-35; NYSAR35"
                     /note="major polyA site"
ORIGIN      
        1 aagtcccagg aggttctgga ctgctcgcaa gcggtggtgc gtcactatca cctcaggttg
       61 gctggttaga gacctccaac atgccttcgg atcgaaggcc aagtcagaga aggaatagat
      121 ctaagagccg tgattatcgt ggtgcacggt caaaggtaac aagagctgat acgaggaaca
      181 gagacgatac tcttgccctc agtatgtatc aggggcctcc gagtgccgac caggggaaca
      241 acatggcgga tgcccctcgg tttggcttct ggacttcagt aagccagtgt ctgcaatact
      301 tgtgggccag gaggcacttg ggcctgcttc tacttttatt ctggacgctg gtgatcctgt
      361 tccgtcctgt gaacactgcg aaattgccca ttcttgctga agctgcagaa cttgaacccc
      421 ctttgggaaa tatgttggac tttttctttc caacaacctg catcataagg gacaaccagg
      481 tggtggtggc atgtaataac cagccgtatc ttagcgagag tgaatgttta aaatccaagt
      541 gctgttcttc aacatctggg actataatca aatgctatgc cccagtaagg gacaagccta
      601 cacaggtgct acgggtgttt ggccttgctg cgatcagcat tctagtcctg ggatttctgc
      661 ctatgtgctg ctgctccatg tgctggagga ggaagaggat gaacaggatg ttgaaggttt
      721 tgaagaaaca gaaatcaaaa gggaagaagc ctaaaggaag gaaggcgtca gaagagagag
      781 ctttactgtc ccattgaaaa tgcagatctg ccatggcaga agagaggaga ctttgtcatc
      841 caaatctaat taaattttga aaggcaactt ttattgtagt ttcaaatcaa attaaagttc
      901 cattgcatgc atcaaa
//
