LOCUS       NM_029798                710 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus FLYWCH family member 2 (Flywch2), transcript variant
            1, mRNA.
ACCESSION   NM_029798
VERSION     NM_029798.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 710)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 710)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   3  (bases 1 to 710)
  AUTHORS   Osipovich,A.B., Singh,A. and Ruley,H.E.
  TITLE     Post-entrapment genome engineering: first exon size does not affect
            the expression of fusion transcripts generated by gene entrapment
  JOURNAL   Genome Res 15 (3), 428-435 (2005)
   PUBMED   15741512
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC122821.4, AK013108.1 and AW124500.1.
            
            On Oct 21, 2017 this sequence version replaced NM_029798.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK013108.1, BY712143.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164139
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-4                 AC122821.4         77431-77434
            5-692               AK013108.1         3-690
            693-710             AW124500.1         1-18                c
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 12.05 cM"
     gene            1..710
                     /gene="Flywch2"
                     /gene_synonym="2810417J12Rik; 3010014L17Rik"
                     /note="FLYWCH family member 2"
                     /db_xref="GeneID:76917"
                     /db_xref="MGI:MGI:1924167"
     exon            1..81
                     /gene="Flywch2"
                     /gene_synonym="2810417J12Rik; 3010014L17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            82..510
                     /gene="Flywch2"
                     /gene_synonym="2810417J12Rik; 3010014L17Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             189..608
                     /gene="Flywch2"
                     /gene_synonym="2810417J12Rik; 3010014L17Rik"
                     /codon_start=1
                     /product="FLYWCH family member 2"
                     /protein_id="NP_084074.1"
                     /db_xref="CCDS:CCDS28464.1"
                     /db_xref="GeneID:76917"
                     /db_xref="MGI:MGI:1924167"
                     /translation="MPQPKPSEQEGESMKASQEPAPQPGTDVVPAAPRKPRKFSKLVL
                     LTASKDSAKVAGAKRKGVHCIMSLGVPGPATLAKALLKTHPEAQRAIEATPLEPEQKR
                     SKQNLDSDGPEDNGGSGVSSSSSEETTVLPEAPSTSP"
     exon            511..694
                     /gene="Flywch2"
                     /gene_synonym="2810417J12Rik; 3010014L17Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      664..669
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Flywch2"
                     /gene_synonym="2810417J12Rik; 3010014L17Rik"
                     /note="hexamer: AATAAA"
     polyA_site      694
                     /gene="Flywch2"
                     /gene_synonym="2810417J12Rik; 3010014L17Rik"
                     /note="major polyA site"
ORIGIN      
        1 gccaaggcgg gggcccaaag cactgaggct gagggacccg ccacggctcc gtcgtccgag
       61 aggcagggcc tgctgccgtc ggacagagcc tctggactcc caggttcctg gccagggagg
      121 aggaggaaaa ggtgagacct atctgccagg gctgggcgtg gcctgagggc caggctgttg
      181 gtcctgggat gcctcagccc aaacccagtg agcaggaggg tgagagcatg aaggccagcc
      241 aggaaccagc tccccagcct ggcacagatg tggtcccagc agcccccagg aagcccagaa
      301 agttctccaa actggttctg ctgacagcct ccaaagacag cgccaaagtg gctggggcca
      361 agcgcaaagg agtgcactgc atcatgtccc tgggggtgcc aggcccagcc accttggcta
      421 aggccctcct caagactcat cctgaggctc agcgggccat tgaagcgact cccctggagc
      481 ccgagcagaa gcgcagcaag cagaacctgg attcagatgg tccagaagac aatggagggt
      541 caggggtgtc ttcttcaagt tcagaggaga ccactgtgct ccctgaggcc cccagcactt
      601 ccccataacc ttggcaactg ctgttgcata agctactttt ataagtaaga aacaaagaga
      661 gaaaataaaa gaagctgtgt gctatttccc accaaaaaaa aaaaaaaaaa
//
