LOCUS       NM_028632                748 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus FCF1 rRNA processing protein (Fcf1), mRNA.
ACCESSION   NM_028632 XM_126976
VERSION     NM_028632.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 748)
  AUTHORS   Wang,M., Anikin,L. and Pestov,D.G.
  TITLE     Two orthogonal cleavages separate subunit RNAs in mouse ribosome
            biogenesis
  JOURNAL   Nucleic Acids Res 42 (17), 11180-11191 (2014)
   PUBMED   25190460
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ085020.1 and BC094619.1.
            
            On Nov 18, 2009 this sequence version replaced NM_028632.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC094619.1, BU938561.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-362               CJ085020.1         16-377
            363-748             BC094619.1         350-735
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 39.48 cM"
     gene            1..748
                     /gene="Fcf1"
                     /gene_synonym="1110008B24Rik"
                     /note="FCF1 rRNA processing protein"
                     /db_xref="GeneID:73736"
                     /db_xref="MGI:MGI:1920986"
     exon            1..36
                     /gene="Fcf1"
                     /gene_synonym="1110008B24Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             34..630
                     /gene="Fcf1"
                     /gene_synonym="1110008B24Rik"
                     /note="FCF1 small subunit"
                     /codon_start=1
                     /product="rRNA-processing protein FCF1 homolog"
                     /protein_id="NP_082908.2"
                     /db_xref="CCDS:CCDS49113.1"
                     /db_xref="GeneID:73736"
                     /db_xref="MGI:MGI:1920986"
                     /translation="MGKQKKTRKYATMKRMLSLRDERLKEKDRLKPKKKEKKDPSALK
                     EREVPQHPSCLFFQYNTQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCI
                     TDCVMAEIEKLGQKFRVALRIAKDPRFDRLPCTHKGTYADDCLVQRVTQHKCYIVATV
                     DRDLKRRIRKIPGVPIMYLSNHRYNIERMPDDYGAPRF"
     exon            37..104
                     /gene="Fcf1"
                     /gene_synonym="1110008B24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            105..176
                     /gene="Fcf1"
                     /gene_synonym="1110008B24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            177..325
                     /gene="Fcf1"
                     /gene_synonym="1110008B24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            326..398
                     /gene="Fcf1"
                     /gene_synonym="1110008B24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            399..486
                     /gene="Fcf1"
                     /gene_synonym="1110008B24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            487..581
                     /gene="Fcf1"
                     /gene_synonym="1110008B24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            582..716
                     /gene="Fcf1"
                     /gene_synonym="1110008B24Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      687..692
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fcf1"
                     /gene_synonym="1110008B24Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      714
                     /gene="Fcf1"
                     /gene_synonym="1110008B24Rik"
                     /note="major polyA site"
ORIGIN      
        1 cgattccgga agaaacagga gtgcggcgtg aacatgggga agcaaaagaa aacaaggaaa
       61 tatgcgacta tgaagcgaat gctcagtctg agagacgagc gacttaaaga aaaggatagg
      121 ttgaagccta agaagaaaga gaagaaagat ccgagcgcgc tgaaggaaag agaagtcccc
      181 cagcatcctt cctgcttgtt cttccagtat aatacacagc tgggtccacc ttaccacatc
      241 cttgtcgata ccaacttcat caacttttcc attaaggcca aactggactt agtgcagtca
      301 atgatggact gtctgtatgc caagtgtatc ccttgtataa ctgattgtgt aatggctgaa
      361 attgagaaat tgggacagaa gtttcgtgtg gcactaagaa tcgctaagga tccacggttt
      421 gaccgattgc cgtgcacaca caaaggaacc tacgctgacg actgcttggt acagagagta
      481 actcagcaca agtgttacat tgtggccaca gttgaccgtg acctcaaacg aagaatccgg
      541 aagatccctg gcgtccctat catgtactta tctaaccaca gatacaacat cgagcggatg
      601 ccagatgatt atggagcccc tcgcttctaa ttctcactcc acagattctg cctgccattc
      661 ttggaccatc tctctcttgt cagttaatta aacacatttt ctgattttta aaaatgaaaa
      721 aaaaaaaaaa aaaaaaaaaa aaaaaaaa
//
