LOCUS       NM_001177420            1503 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus F-box and WD-40 domain protein 28 (Fbxw28), transcript
            variant 2, mRNA.
ACCESSION   NM_001177420
VERSION     NM_001177420.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1503)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1503)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC164438.3 and BC084592.1.
            
            Transcript Variant: This variant (2) uses an alternate terminal
            exon and differs in the 3' coding region and 3' UTR compared to
            variant 1. The resulting protein (isoform 2) has a different,
            longer C-terminus compared to isoform 1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC084592.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-112               AC164438.3         57508-57619         c
            113-962             BC084592.1         104-953
            963-1028            AC164438.3         46148-46213         c
            1029-1183           BC084592.1         1019-1173
            1184-1207           AC164438.3         44493-44516         c
            1208-1503           BC084592.1         1198-1493
FEATURES             Location/Qualifiers
     source          1..1503
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 59.64 cM"
     gene            1..1503
                     /gene="Fbxw28"
                     /gene_synonym="668758; Gm9337"
                     /note="F-box and WD-40 domain protein 28"
                     /db_xref="GeneID:668758"
                     /db_xref="MGI:MGI:3779847"
     exon            1..127
                     /gene="Fbxw28"
                     /gene_synonym="668758; Gm9337"
                     /inference="alignment:Splign:2.1.0"
     CDS             38..1438
                     /gene="Fbxw28"
                     /gene_synonym="668758; Gm9337"
                     /note="isoform 2 is encoded by transcript variant 2"
                     /codon_start=1
                     /product="F-box and WD-40 domain protein 28 isoform 2"
                     /protein_id="NP_001170891.1"
                     /db_xref="CCDS:CCDS52933.1"
                     /db_xref="GeneID:668758"
                     /db_xref="MGI:MGI:3779847"
                     /translation="MEIHLPSVPMMEILSYLDAYSLLQAAQVNKNWNELASSDVLWRK
                     LCQKRWLYCYMFTLPLHGLETWKQFFFDKTWQEHAKTRAKPEDFTYKEFPVEFEFRAH
                     PWYISRHGLTRNGQEKSAVCMTSMNRISTWDIHEGAMTWESPKQPSYIVWMTTLPEMQ
                     IAVTIDMQSTIKLWDCHNKEVLASKTGLFFGCKLLQSEFTKDGPIVLVGDACGNLYIF
                     RIPDLHLISKVNVFPYSIDELYFSPQKKWVFLIGHRLNDLTKVFYMSSLLRPSEFSAP
                     VSTVLKVPVIRKVFWTPRREDRITLMSLILPKNITKFDTFDMKLEGIGNKVTIQGYLT
                     ASFSLAEDEGRPDYFGVSDKDVIVCSTRFSLLLFDINGLRLQTFHYCPEEIWRLWVDP
                     VHVIVTCDAGSLDIYAWEKRSLLLRKCYRLRNRNYQQMSGYIIKTLCDDMSIISVANN
                     SPKPCCLMAYTLSVCS"
     exon            128..165
                     /gene="Fbxw28"
                     /gene_synonym="668758; Gm9337"
                     /inference="alignment:Splign:2.1.0"
     exon            166..329
                     /gene="Fbxw28"
                     /gene_synonym="668758; Gm9337"
                     /inference="alignment:Splign:2.1.0"
     exon            330..445
                     /gene="Fbxw28"
                     /gene_synonym="668758; Gm9337"
                     /inference="alignment:Splign:2.1.0"
     exon            446..658
                     /gene="Fbxw28"
                     /gene_synonym="668758; Gm9337"
                     /inference="alignment:Splign:2.1.0"
     exon            659..817
                     /gene="Fbxw28"
                     /gene_synonym="668758; Gm9337"
                     /inference="alignment:Splign:2.1.0"
     exon            818..1028
                     /gene="Fbxw28"
                     /gene_synonym="668758; Gm9337"
                     /inference="alignment:Splign:2.1.0"
     exon            1029..1207
                     /gene="Fbxw28"
                     /gene_synonym="668758; Gm9337"
                     /inference="alignment:Splign:2.1.0"
     exon            1208..1332
                     /gene="Fbxw28"
                     /gene_synonym="668758; Gm9337"
                     /inference="alignment:Splign:2.1.0"
     exon            1333..1493
                     /gene="Fbxw28"
                     /gene_synonym="668758; Gm9337"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagaaaggag agtcagtgtg gacttaggcc actgaagatg gagatccatt tacctagtgt
       61 gccgatgatg gaaatcctct cctatctgga tgcctacagt ttgctacagg ctgcccaagt
      121 gaacaagaac tggaatgaac ttgcaagcag tgatgtcctg tggaggaagt tgtgtcagaa
      181 gagatggctc tactgttaca tgttcaccct accgctccat ggcttagaga catggaagca
      241 gttcttcttt gacaaaacat ggcaagaaca cgccaagacc cgggcaaagc cagaagattt
      301 cacttacaag gaatttcctg tggagtttga atttcgggca catccatggt atatctcaag
      361 gcatggctta acaagaaatg gacaagaaaa gtctgctgtc tgtatgactt ccatgaacag
      421 gatttctacc tgggatattc atgagggtgc tatgacctgg gaaagtccaa aacagccctc
      481 ctatatcgta tggatgacta ccctccctga gatgcaaatt gcagtcacta tagatatgca
      541 atcaactatc aaactgtggg actgccacaa caaggaagtt ctggcgtcga aaacgggcct
      601 gttctttggc tgtaaattac tgcaatctga atttactaag gatggcccga ttgtcttggt
      661 aggtgatgcc tgtggtaatc tctacatctt taggattcct gacttacacc tcatttccaa
      721 ggtgaatgta ttcccataca gtattgatga actctacttc tctcctcaga agaaatgggt
      781 ctttctgata gggcaccgcc taaatgactt gacaaaggtg ttttacatga gcagcttact
      841 gaggccatca gaattctctg cccctgtgtc taccgttctc aaagttccag taatccgaaa
      901 agtcttctgg accccaagaa gggaagacag gataaccctg atgtccttaa ttttacccaa
      961 aaacatcaca aaatttgaca catttgatat gaagttggaa gggatcggga acaaagtaac
     1021 tattcaagga tatttgacag ccagcttctc gctggcagaa gatgagggga gaccagacta
     1081 ttttggagtc agtgataagg acgtgattgt ttgttcaact agattctctc tcttgctctt
     1141 tgacataaat ggtctccgtc tgcagacatt tcactactgc ccagaagaga tctggagact
     1201 atgggtggac cctgttcatg tcattgtcac ctgtgatgct ggctctttgg atatatatgc
     1261 atgggagaag agaagcctgc tactaaggaa gtgttatcga ctacgaaata ggaattatca
     1321 gcaaatgtct ggctacatta taaaaacatt atgtgacgat atgagcataa tttcagtggc
     1381 aaataatagt cccaagccct gctgtctgat ggcatatacc ttgagtgtct gctcttgaaa
     1441 actgggtgtg ttgtgtgtcg tcttactcaa tgataataaa ggtctatttc caaaaaaaaa
     1501 aaa
//
