LOCUS       NM_011811               2274 bp    mRNA    linear   ROD 17-DEC-2022
DEFINITION  Mus musculus phenylalanyl-tRNA synthetase, beta subunit (Farsb),
            transcript variant 1, mRNA.
ACCESSION   NM_011811 XM_622866
VERSION     NM_011811.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2274)
  AUTHORS   Sharov AA, Piao Y, Matoba R, Dudekula DB, Qian Y, VanBuren V, Falco
            G, Martin PR, Stagg CA, Bassey UC, Wang Y, Carter MG, Hamatani T,
            Aiba K, Akutsu H, Sharova L, Tanaka TS, Kimber WL, Yoshikawa T,
            Jaradat SA, Pantano S, Nagaraja R, Boheler KR, Taub D, Hodes RJ,
            Longo DL, Schlessinger D, Keller J, Klotz E, Kelsoe G, Umezawa A,
            Vescovi AL, Rossant J, Kunath T, Hogan BL, Curci A, D'Urso M, Kelso
            J, Hide W and Ko MS.
  TITLE     Transcriptome analysis of mouse stem cells and early embryos
  JOURNAL   PLoS Biol 1 (3), E74 (2003)
   PUBMED   14691545
REFERENCE   2  (bases 1 to 2274)
  AUTHORS   Boettger-Tong HL, Rohozinski J, Agoulnik AI, Dohmae K, Nishimune Y,
            Levy N and Bishop CE.
  TITLE     Identification and sequencing the juvenile spermatogonial depletion
            critical interval on mouse chromosome 1 reveals the presence of
            eight candidate genes
  JOURNAL   Biochem Biophys Res Commun 288 (5), 1129-1135 (2001)
   PUBMED   11700028
REFERENCE   3  (bases 1 to 2274)
  AUTHORS   Piao Y, Ko NT, Lim MK and Ko MS.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
REFERENCE   4  (bases 1 to 2274)
  AUTHORS   Zhou X, Richon VM, Ngo L, Rifkind RA and Marks PA.
  TITLE     Cloning of the cDNA encoding phenylalanyl tRNA synthetase
            regulatory alpha-subunit-like protein whose expression is
            down-regulated during differentiation
  JOURNAL   Gene 233 (1-2), 13-19 (1999)
   PUBMED   10375616
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC158559.7, AK010271.1 and BM212593.2.
            
            [WARNING] On May 18, 2023 this sequence was replaced by
            NM_011811.5.
            
            On May 8, 2013 this sequence version replaced NM_011811.3.
            
            Transcript Variant: This variant (1) represents the longest
            variant. Variants 1 and 2 encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF123263.2, AK045432.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-38                AC158559.7         95964-96001         c
            39-1933             AK010271.1         2-1896
            1934-2274           BM212593.2         1-341               c
FEATURES             Location/Qualifiers
     source          1..2274
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1"
     gene            1..2274
                     /gene="Farsb"
                     /gene_synonym="Farsa; Farsl; Farslb; Frsb"
                     /note="phenylalanyl-tRNA synthetase, beta subunit"
                     /db_xref="GeneID:23874"
                     /db_xref="MGI:MGI:1346035"
     exon            1..113
                     /gene="Farsb"
                     /gene_synonym="Farsa; Farsl; Farslb; Frsb"
                     /inference="alignment:Splign:2.1.0"
     CDS             56..1825
                     /gene="Farsb"
                     /gene_synonym="Farsa; Farsl; Farslb; Frsb"
                     /EC_number="6.1.1.20"
                     /note="phenylalanine-tRNA synthetase-like, beta subunit;
                     phenylalanyl-tRNA synthetase beta chain;
                     phenylalanine--tRNA ligase beta chain; PheRS alpha;
                     phenylalanine tRNA synthetase alpha"
                     /codon_start=1
                     /product="phenylalanine--tRNA ligase beta subunit"
                     /protein_id="NP_035941.2"
                     /db_xref="CCDS:CCDS15084.1"
                     /db_xref="GeneID:23874"
                     /db_xref="MGI:MGI:1346035"
                     /translation="MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKQI
                     ISKEQGHGKAQGASDVVLYKIDVPANRYDLLCLEGLARGLQVFKERIKAPVYKRVMPK
                     GDIQKLVITEETAKVRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIG
                     THDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIESKP
                     LYPVIYDSNGVVLSMPPIINGNHSKITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSE
                     HCENQFTVEAVEVVSPNGKSSTFPELPYRKEMVRADLINKKVGIRETPANLAKLLTRM
                     CLKSEVIGDGNQIEVEIPPTRADVIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFP
                     LNKLTELLRLDMAAAGFTEALTFALCSQEDIADKLGLDISATKAVHISNPKTAEFQVA
                     RTTLLPGLLKTIAANRKMPLPLKLFEISDVVVKDSGKDVGAKNYRHLCAVYYNKTPGF
                     EIIHGLLDRIMQLLDVPPGEESGGYMIKASAGSAFFPGRCAEIFVGGQSIGKLGVLHP
                     DVITKFELTMPCSSLEINIEPFL"
     exon            114..169
                     /gene="Farsb"
                     /gene_synonym="Farsa; Farsl; Farslb; Frsb"
                     /inference="alignment:Splign:2.1.0"
     exon            170..324
                     /gene="Farsb"
                     /gene_synonym="Farsa; Farsl; Farslb; Frsb"
                     /inference="alignment:Splign:2.1.0"
     exon            325..394
                     /gene="Farsb"
                     /gene_synonym="Farsa; Farsl; Farslb; Frsb"
                     /inference="alignment:Splign:2.1.0"
     exon            395..510
                     /gene="Farsb"
                     /gene_synonym="Farsa; Farsl; Farslb; Frsb"
                     /inference="alignment:Splign:2.1.0"
     exon            511..661
                     /gene="Farsb"
                     /gene_synonym="Farsa; Farsl; Farslb; Frsb"
                     /inference="alignment:Splign:2.1.0"
     exon            662..770
                     /gene="Farsb"
                     /gene_synonym="Farsa; Farsl; Farslb; Frsb"
                     /inference="alignment:Splign:2.1.0"
     exon            771..841
                     /gene="Farsb"
                     /gene_synonym="Farsa; Farsl; Farslb; Frsb"
                     /inference="alignment:Splign:2.1.0"
     exon            842..903
                     /gene="Farsb"
                     /gene_synonym="Farsa; Farsl; Farslb; Frsb"
                     /inference="alignment:Splign:2.1.0"
     exon            904..955
                     /gene="Farsb"
                     /gene_synonym="Farsa; Farsl; Farslb; Frsb"
                     /inference="alignment:Splign:2.1.0"
     exon            956..1017
                     /gene="Farsb"
                     /gene_synonym="Farsa; Farsl; Farslb; Frsb"
                     /inference="alignment:Splign:2.1.0"
     exon            1018..1225
                     /gene="Farsb"
                     /gene_synonym="Farsa; Farsl; Farslb; Frsb"
                     /inference="alignment:Splign:2.1.0"
     exon            1226..1306
                     /gene="Farsb"
                     /gene_synonym="Farsa; Farsl; Farslb; Frsb"
                     /inference="alignment:Splign:2.1.0"
     exon            1307..1399
                     /gene="Farsb"
                     /gene_synonym="Farsa; Farsl; Farslb; Frsb"
                     /inference="alignment:Splign:2.1.0"
     exon            1400..1517
                     /gene="Farsb"
                     /gene_synonym="Farsa; Farsl; Farslb; Frsb"
                     /inference="alignment:Splign:2.1.0"
     exon            1518..1673
                     /gene="Farsb"
                     /gene_synonym="Farsa; Farsl; Farslb; Frsb"
                     /inference="alignment:Splign:2.1.0"
     exon            1674..2274
                     /gene="Farsb"
                     /gene_synonym="Farsa; Farsl; Farslb; Frsb"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctctagggtc gctgaggccc cgcatgtggc gcaggcgcag tgtccacgac tcgccatgcc
       61 gactgtcagc gtaaagcgag acctgctctt ccaagccctg ggccggacct acactgatga
      121 agagtttgac gaactgtgtt ttgaatttgg tctggaactt gatgaaatta cttctgaaaa
      181 gcaaatcata agcaaggaac aaggtcatgg gaaggcacag ggggcctcag atgttgtgct
      241 ttacaagatt gacgtccctg ccaacagata cgacctcctg tgtctggaag gactggctcg
      301 gggcctccag gtcttcaaag aaaggatcaa agctccggta tataagcgag tgatgcccaa
      361 gggagacatc caaaagctgg ttatcacaga agagacagcc aaagtgcgcc cttttgctgt
      421 agcagcagtt ctccggaata tcaagttcac taaagaccga tatgacagct tcattgaact
      481 tcaggagaaa ctacaccaga atatctgcag gaaaagagcg ttggttgcta ttggaactca
      541 cgacttggac actttatcag gcccatttac ttacaccgcg aaacgtcctt cagatatcaa
      601 attcaagcct ctgaataaga ccaaggagta tacagcttgt gaattaatga acatatacaa
      661 gactgacaac caccttaaac attatttaca tatcattgaa agtaagcccc tgtatccagt
      721 tatctatgac agcaatggtg tggtcctgtc gatgcctccg attataaatg ggaatcattc
      781 aaaaataaca gtaaatacta ggaatatatt tattgaatgc acagggactg acttcactaa
      841 agcaaaaatc gtgcttgaca ttattgtcac catgttcagt gaacactgtg aaaatcagtt
      901 tacagttgaa gcagttgaag tagtttctcc taatggaaaa tcaagtacct ttccagagct
      961 gccttacaga aaggagatgg tgagagctga tttaattaac aagaaagttg gaatcagaga
     1021 aactcctgca aatctcgcca agctcctgac caggatgtgt ctgaagtcag aagtcatagg
     1081 tgacggcaat cagattgagg ttgaaattcc tccgaccaga gcagatgtca tccatgcatg
     1141 tgacattgtg gaggacgcag ctattgctta tggctataac aacattcaga tgactctgcc
     1201 gaaaacgtac accatagcta atcaatttcc tctcaacaag ctcaccgagc tcctcagact
     1261 tgacatggct gcggctggct tcaccgaagc actgactttt gctctgtgct cccaagaaga
     1321 tattgctgac aagcttggcc tggatatctc tgcaacaaag gcagtgcaca taagtaatcc
     1381 taaaaccgct gagttccagg tggcgcgcac tacccttctt cctggccttc taaagaccat
     1441 tgcagcaaac cggaagatgc cccttcctct caaactgttt gaaatctctg acgttgtagt
     1501 aaaagattct ggcaaagatg taggtgcgaa aaactacagg catctctgtg ctgtttatta
     1561 caacaagact cccgggtttg agatcatcca tggcttgctg gacagaatta tgcagctgct
     1621 cgatgtgcct cctggtgagg aaagcggggg ctacatgatc aaagcgtctg caggttctgc
     1681 ctttttccct ggacggtgtg ctgagatctt tgttggaggt caaagcattg ggaagctagg
     1741 cgtccttcat cctgatgtta tcaccaaatt tgagctgacc atgccctgtt cctctctgga
     1801 aatcaatatt gagccctttt tgtgaggttg gtctctgagt gtccctttct gctcctgtgg
     1861 tgtccttcag ccctctttta cagcacatat ccatttgtgc gttaatgttt aataaagtga
     1921 aatgtgctat ctgactcctt gcgtagctgc attaggccag cgtgtggaac agctggtgtg
     1981 tatctgcatg taccacattg gggagaggtg ccctagacag gcagggtgag ttctgggagc
     2041 ggaagttttg cttggccttc agagtattgg ttacttctga ctcctcctga atagaaggaa
     2101 acaactcatc aactagaaca catgttgtac agccttaagc cttttctaaa cctgataagt
     2161 attaatcaat aaaacatttt aggaaaatgt tttcagaatc agtatgacca agcagtgaca
     2221 acctttcaag tcatcttttt taagttgatt tatatgtgaa tatatgtgta tctg
//
