LOCUS       NM_027633               1358 bp    mRNA    linear   ROD 06-OCT-2024
DEFINITION  Mus musculus Fancd2 opposite strand (Fancd2os), mRNA.
ACCESSION   NM_027633 XM_485816
VERSION     NM_027633.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1358)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
REFERENCE   2  (bases 1 to 1358)
  AUTHORS   Takahashi,Y., Cerasoli,D.M., Dal Porto,J.M., Shimoda,M., Freund,R.,
            Fang,W., Telander,D.G., Malvey,E.N., Mueller,D.L., Behrens,T.W. and
            Kelsoe,G.
  TITLE     Relaxed negative selection in germinal centers and impaired
            affinity maturation in bcl-xL transgenic mice
  JOURNAL   J Exp Med 190 (3), 399-410 (1999)
   PUBMED   10430628
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC153589.2 and AK016461.1.
            
            On Nov 13, 2009 this sequence version replaced NM_027633.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK016461.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-62                AC153589.2         204119-204180       c
            63-422              AK016461.1         4-363
            423-423             AC153589.2         201282-201282       c
            424-1358            AK016461.1         365-1299
FEATURES             Location/Qualifiers
     source          1..1358
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 52.8 cM"
     gene            1..1358
                     /gene="Fancd2os"
                     /gene_synonym="4931417G12Rik"
                     /note="Fancd2 opposite strand"
                     /db_xref="GeneID:70979"
                     /db_xref="MGI:MGI:1918229"
     exon            1..87
                     /gene="Fancd2os"
                     /gene_synonym="4931417G12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            88..188
                     /gene="Fancd2os"
                     /gene_synonym="4931417G12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            189..767
                     /gene="Fancd2os"
                     /gene_synonym="4931417G12Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             197..733
                     /gene="Fancd2os"
                     /gene_synonym="4931417G12Rik"
                     /note="Fanconi anemia group D2 protein opposite strand
                     transcript protein"
                     /codon_start=1
                     /product="FANCD2 opposite strand protein"
                     /protein_id="NP_081909.2"
                     /db_xref="CCDS:CCDS20427.1"
                     /db_xref="GeneID:70979"
                     /db_xref="MGI:MGI:1918229"
                     /translation="MAGYQLWSPWTPLDESFQWLRHTTPTPSSKHPFRASPCFPHTPS
                     DLEVQLCLQEVTLVLDRPLVEPGESPKLPCHTSELRAVSNKKGVVRKPQPVRLSGVDS
                     VFGRVITAQPPKWTGTFRVSDKSAFCKIISREHQWPTGLKEPQVQMTVTMCKQMLRSI
                     LLLYATYKKCTFALQHSK"
     exon            768..1358
                     /gene="Fancd2os"
                     /gene_synonym="4931417G12Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1264..1269
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fancd2os"
                     /gene_synonym="4931417G12Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1285
                     /gene="Fancd2os"
                     /gene_synonym="4931417G12Rik"
                     /note="major polyA site"
ORIGIN      
        1 gagtcacaaa ggcggttgct aggcgccgaa tggaggaaaa aaagcggcag ctacccggga
       61 gcgtgcaatc tgcgtggagt ttagtaggtt aagaatatag taggcataaa ccaccagtcc
      121 aggcactgtt ttatgctgga tgtctccata gctgtagtga aaactggagg ttactaaaaa
      181 gtcacactga ctgtcaatgg caggctacca gctctggtca ccatggaccc cactggatga
      241 gagcttccaa tggctgcggc acactacacc taccccttcc tccaaacacc cttttagggc
      301 ctctccttgc ttcccccaca ccccctctga ccttgaagtg cagttgtgcc ttcaagaagt
      361 cacgcttgtc ctagacagac cacttgtgga acctggagag agccccaagt taccctgcca
      421 cacatcagag ctccgagccg tgagtaacaa gaaaggggtg gtgaggaagc cgcagccagt
      481 ccgcctcagt ggagtggatt ctgttttcgg tagggtcatc acagcccagc cacccaagtg
      541 gactggaacc ttcagagttt cagacaagtc agccttctgc aaaataatca gcagggagca
      601 ccagtggcct acagggctca aggagcctca ggtccaaatg acagtgacta tgtgcaaaca
      661 gatgctacgc tcaatcctct tgctgtatgc gacttacaag aagtgcacct tcgccttgca
      721 gcactccaag taaagggtcc ccactggacc tccacaccag ctctctgaaa caggaccaac
      781 gatactgagc gaggaggagc agttctactc taaagctgga tggccgtttc aaagttaacc
      841 taactttgat gtgcatgtgc gaaaatgatt accttatcat agaaataagc cagcctagtt
      901 gagcacacct taaatgccaa agacaatgat gaactggtga agaaagagat gccaagaaaa
      961 gacaggtatg gatctctgga taccagagga tgaaggggtc aaaaaaatct ataaatgggt
     1021 taaggactaa tttaaaaaca gcattccctc ctcaaatcaa tgtgaacaag taaaacaaaa
     1081 acaaaaaacc aacaacaaca acccaacaaa acataacttt aataccggta tgagtaaaaa
     1141 tattaacaaa aattaaataa tcttaatggc acagcgagga agagcctggc agcatctctg
     1201 agactgggct tcctggcaga agacagaaga atcccctatt ttaactcctg atgttctatt
     1261 tctaataaat tacaattatt ttgtatgatt attacaaata tattataggc ataattcaaa
     1321 ttaatgtgga aataaaaact atatatacat acaaagcc
//
