LOCUS       NM_145986               3211 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus family with sequence similarity 83, member F (Fam83f),
            transcript variant 1, mRNA.
ACCESSION   NM_145986 XM_972724
VERSION     NM_145986.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3211)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 3211)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC147041.3.
            
            On Jan 20, 2023 this sequence version replaced NM_145986.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC016600.1, AK145865.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-760               AC147041.3         28265-29024         c
            761-928             AC147041.3         10568-10735         c
            929-1050            AC147041.3         9998-10119          c
            1051-1736           AC147041.3         8056-8741           c
            1737-3211           AC147041.3         228-1702            c
FEATURES             Location/Qualifiers
     source          1..3211
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 37.89 cM"
     gene            1..3211
                     /gene="Fam83f"
                     /note="family with sequence similarity 83, member F"
                     /db_xref="GeneID:213956"
                     /db_xref="MGI:MGI:2146227"
     exon            1..760
                     /gene="Fam83f"
                     /inference="alignment:Splign:2.1.0"
     CDS             290..1777
                     /gene="Fam83f"
                     /note="isoform 1 is encoded by transcript variant 1;
                     protein FAM83F"
                     /codon_start=1
                     /product="protein FAM83F isoform 1"
                     /protein_id="NP_666098.2"
                     /db_xref="CCDS:CCDS49672.1"
                     /db_xref="GeneID:213956"
                     /db_xref="MGI:MGI:2146227"
                     /translation="MAESQLSCLDEAHVNERVTEAHAAFYYCERRRAALEALLGGGEQ
                     AYRELVKKERLRDFLSSQERQALCAAWSPYEEAVSSTRAKAKAKAKVPAQPTESLAYW
                     PDRSDTEVPPLDLGWTDTNFYRGVSRVTLFTHPPKEEKAPHLKQVVRQMIQQAQKVIA
                     VVMDLFTDGDIFQDIVDAACKRRVPVYIILDEGGVKYFLEMCQGLELADFRIRNIRVR
                     SVTGIGFYMPMGKIKGTLSSKFLMVDGDKVATGSFSFTWSSSYVDRNLLLLLTGQNME
                     PFDIEFRELYAISEEVNLHQHLGLAGRIGLNYSSTVARKLINPKYALVAGTRRPPGEM
                     MRWAARQQREAGGNVEGQEEGSGGGESARRLESFLNDLVTVEQILPTVEPISPRLQRP
                     TNGRPVSHAHTDAKHRSREALPQNGKGEAANGEATPAKEGKRFSSRLFSRRVKRPAVP
                     SSMASSPSTETFADVEFPLGKRHNEGSNANISGKGITKASNCVIS"
     exon            761..928
                     /gene="Fam83f"
                     /inference="alignment:Splign:2.1.0"
     exon            929..1050
                     /gene="Fam83f"
                     /inference="alignment:Splign:2.1.0"
     exon            1051..1736
                     /gene="Fam83f"
                     /inference="alignment:Splign:2.1.0"
     exon            1737..3211
                     /gene="Fam83f"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3178..3183
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fam83f"
                     /note="hexamer: ATTAAA"
     polyA_site      3211
                     /gene="Fam83f"
                     /note="major polyA site"
ORIGIN      
        1 acttccacgc cgacactctg caccccagcc gggctaagta ggccagagac gcagggcgtc
       61 ggctgagccg cccgtgaggt ccccgcaagc cctgcagagg cggcggtccc tctccgcccg
      121 acggccgcgc ccgcaccggg gcccgcgccg attggccgac tggcgatcgc tgggcgggcc
      181 gaggcggacc tcgcggccag gtgaggcgcc ccgcccctcg agcgctccag gtgcggcggt
      241 ggggacagca gggtccgagc ctggggcccc gggacagggc tggggcgcca tggccgagtc
      301 ccaactgagc tgcctggacg aggcgcacgt gaacgagagg gtgaccgagg cacatgcagc
      361 tttctactac tgcgagaggc ggcgggccgc gctggaggcg ctgctgggtg gaggcgagca
      421 ggcctaccgc gaactggtca agaaggagcg gctgcgggac ttcctctcca gccaggagcg
      481 ccaggccctc tgcgccgcct ggagccccta cgaggaggca gtctccagca cccgtgccaa
      541 ggctaaggcc aaggccaagg tcccggccca gcccactgag tccctggcct actggccaga
      601 ccgctcggac accgaagtgc ccccactgga cctggggtgg acagacacca acttctaccg
      661 cggtgtgagc cgagtcacgc tcttcaccca cccgcccaaa gaagagaagg caccgcacct
      721 gaagcaggtg gtcaggcaga tgatccagca ggcccagaag gtcattgctg tggtcatgga
      781 tcttttcact gatggggata tattccaaga cattgtggat gctgcctgta aacgccgggt
      841 tcctgtatac atcatcctgg atgagggtgg agtgaaatac tttttggaga tgtgtcaggg
      901 cctagagctt gcagacttcc gcattcggaa catccgtgtc cgctctgtga caggaattgg
      961 gttctacatg cccatgggga agatcaaggg gactctctca tcaaagttcc tgatggtcga
     1021 tggggacaaa gtagctaccg gctctttcag ctttacctgg agctcctcct atgtggacag
     1081 gaatctcctc ttgctcctga caggacagaa catggagccc tttgacatag agttccggga
     1141 gctgtatgcc atctcggagg aagtgaactt gcaccagcac ctgggcctgg caggcaggat
     1201 tggcctcaac tactcctcca cggtagctcg aaagcttatc aaccccaagt acgcattggt
     1261 ggcaggcacc cgccgtcctc caggagagat gatgcgctgg gcggcccggc agcagcgaga
     1321 agctggtggc aacgtagagg ggcaggagga gggcagtggc ggtggtgagt ctgcccggcg
     1381 tctggagagc tttctgaatg acctggtcac agtagagcag atattgccca ctgtggagcc
     1441 catttcccca agattgcaga gacctaccaa tggcagaccg gtctctcatg cacacacaga
     1501 cgcgaagcac aggtcccgag aggcactgcc ccagaatggc aagggagaag ctgccaatgg
     1561 ggaggccacc ccagccaagg agggcaaacg cttcagcagc aggctcttca gccgtcgagt
     1621 gaagaggcct gcagtgccca gcagcatggc cagctccccc tccactgaga cgtttgccga
     1681 tgtggagttt cctctgggaa agaggcacaa tgagggttcc aatgccaaca tatcaggtaa
     1741 aggaatcacc aaggccagca actgtgtgat ctcctgagct gcagtgcatt ggtgggcagg
     1801 acctgcagat gcccacccat ccggtcctat gctgaggaga agaacatggc ctcttccctg
     1861 tactaggtca cacatcagac cctcagcagg cctcctaccc tgtagcctcc attccagtct
     1921 tagtgctgga attccaaaca gcagagtctg aatctcttct cagcatctaa accgtcgcat
     1981 ggctgcagca gaccgcggtg gcctgacaag aaacaccgct accttgttta catgaagtag
     2041 acgcctgcct agtgtctgct ttccttgttg ccaacctgtc ctccactggg ccagccctcc
     2101 ttacaggtcc tcgggtggga caagggccat tctttctgcc ttggtaggac agaatgtcca
     2161 aagcagcccc agccactttg ccttcttctt ggacatctgg tgctgtctag ttctccatat
     2221 cccagaggtt ggtgggaaaa atggaagaag gtgggactct gagccagtct tgctccaggt
     2281 ggactatgca gctggaatgg ctggaatatt gtctattatg gtcttcagac gctcatttct
     2341 gatggctcct gaactagtct gctactggaa ttgtggtggg gataggaata cttctgcctc
     2401 cctccagcct gtggcaggat ctgacagtgc tggcaaagaa cccctttcct ttctacactg
     2461 tagcctgcct gagtgccctg ggattccctg gatggtgctg ttgaaagcta gagcttgtag
     2521 agtgcctttc tcgggcctgc tcctttcagt aggcttttgt ttacagaccc tgtggagggt
     2581 gggaggagga tgggccctca ggacatgaac atttgtggtt cctcccagcc caccccccat
     2641 tacccactag ggcttccttc atgaaacttc agccaaagac tagccatagc ctctttcaga
     2701 attgcaagct gttctcagaa gcctccgttt ctctaagtca ggttggctta agttccagga
     2761 caagcagcca cctcccctta cagtgacctg tccaggctga gggagagtga gtgtgacata
     2821 gacatctccg actgtagact ctggtcaacc ctcctgaaca ggcagaatga cagaggggca
     2881 gaaggccaca atgaagccct tctaggcctc caagccaaga tcttctctct ttcctttctg
     2941 aaaagacctt gggcaccact agtaccaggg agggacaggg gcatctgcag aggcagccgg
     3001 tgagaggcag ggaggaggca ttgtggacta cagtgggcaa cacgtggcgg cctgttcctg
     3061 tatctggcct ccctgctggt ggggagggag aaggaaaata atggatggcc tcagtccata
     3121 gtcccctctg tccaccccaa ggttagcccc accgtggctt cccaagcctt tgtgaggatt
     3181 aaacacttct ggtaagtgct tcctgataca a
//
