LOCUS       NM_001033170            2900 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus family with sequence similarity 83, member E (Fam83e),
            mRNA.
ACCESSION   NM_001033170
VERSION     NM_001033170.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2900)
  AUTHORS   Pan,J., Mor,G., Ju,W., Zhong,J., Luo,X., Aldo,P.B., Zhong,M.,
            Yu,Y., Jenkins,E.C., Brown,W.T. and Zhong,N.
  TITLE     Viral Infection-Induced Differential Expression of LncRNAs
            Associated with Collagen in Mouse Placentas and Amniotic Sacs
  JOURNAL   Am J Reprod Immunol 74 (3), 237-257 (2015)
   PUBMED   26073538
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC167242.4.
            
            On Feb 6, 2008 this sequence version replaced NM_001033170.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC042793.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1435              AC167242.4         121880-123314
            1436-1603           AC167242.4         124101-124268
            1604-1728           AC167242.4         124514-124638
            1729-2173           AC167242.4         127292-127736
            2174-2900           AC167242.4         129426-130152
FEATURES             Location/Qualifiers
     source          1..2900
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 29.46 cM"
     gene            1..2900
                     /gene="Fam83e"
                     /gene_synonym="4930403C10Rik"
                     /note="family with sequence similarity 83, member E"
                     /db_xref="GeneID:73813"
                     /db_xref="MGI:MGI:1921063"
     exon            1..1435
                     /gene="Fam83e"
                     /gene_synonym="4930403C10Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             962..2407
                     /gene="Fam83e"
                     /gene_synonym="4930403C10Rik"
                     /codon_start=1
                     /product="protein FAM83E"
                     /protein_id="NP_001028342.2"
                     /db_xref="CCDS:CCDS39959.2"
                     /db_xref="GeneID:73813"
                     /db_xref="MGI:MGI:1921063"
                     /translation="MAASQLAALEGEELGAGEPALTKASPAVLYSEGQRLALEALLSS
                     GEETFWACVQQERLPPFLSADEAQALATAAEDWLVPSQEPGAAGTGTAITDGDVGSLT
                     YWPRQSEEPAPLLRLGWPEDTAWKGITRAQLYTQPPGEGQPPIKELVHQEIQAARKLV
                     AVVMDVFTDPDLLRDMVDAATRRWIPVYLLLDHQHLPAFLALAQQLGVNLWTTENLDI
                     RTVQGHTFQSRRRRQVSGHVREKFVLLDGDRVISGSYSFTWSDSRLHRSLVTLLTGEI
                     ADAFNQEFRVLYAASRPLSAAPARSPLFSPPEGPQLPRSPHRVALRCPVAPVAPLLSD
                     GPLAQRLAACHILERDKQETPTTTGPALSDILRSVQRTRTTSGPPTRPSRSLWDLSRL
                     SQLSGSSDGENESKKFWVSKDTPARALMRQRGTGGGPRAEMDSRSQPWGGPLPSIPAR
                     RLRYLSPAQRRLGDNATTSDWASGSGSGRRR"
     exon            1436..1603
                     /gene="Fam83e"
                     /gene_synonym="4930403C10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1604..1728
                     /gene="Fam83e"
                     /gene_synonym="4930403C10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1729..2173
                     /gene="Fam83e"
                     /gene_synonym="4930403C10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2174..2900
                     /gene="Fam83e"
                     /gene_synonym="4930403C10Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2880..2885
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fam83e"
                     /gene_synonym="4930403C10Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      2900
                     /gene="Fam83e"
                     /gene_synonym="4930403C10Rik"
                     /note="major polyA site"
ORIGIN      
        1 ggaagctcct gagctggccc tcagaccggg ccgaagcctg gggtctgtag gtggggggcc
       61 tggccttctg gatcgcgtgg tgccagttgg ctggaaccta attcagcttc acaggtccat
      121 agttcctgtc caggaagtag agtacagctt ggagactaag gttggcaaga aacccaggct
      181 aggttctcaa tcgatcggag gacagtactc atggctgcta acatctcgga ctggttttga
      241 ggctcacagc caaggtagac ttcagacttc aataccttga agatcctcac tgaaggagac
      301 tggcaagtgt ctggggagga gttgggggag ggggcagggg ataggttctt tctgacccta
      361 tgacaggcag aactgggaga gagattagcc tgtgggagct ggggtggtgg gcaagaaagt
      421 ttactcagac tcagaaactg cctctcctgc tgtcctactg agattaatct ccatgcaatg
      481 aaagggagga aagagtgggt cagataccat agataagcca aagtggcagg cagtcgagcc
      541 attggtcaca agcagtaggg tgaccaagga caggcaagca gccatttagc agaaaatgct
      601 taggctgatg gccagacctg tcagggcagc caggtcatcc tgacaggcct ggaacagcca
      661 agaaccacct aaagctgccg tagctccaag tcacaggtgg tcctgcggtt tggcagaggc
      721 aaaatgggag atggctgact ggcaggtagt cagcaggcac atgtgatcag atccatggtg
      781 taagggtatg gagagtctgt agggactgag tcgggcacct tcagggagct gtgtggatgt
      841 ttacagacct accctggggg ctttgggtgg ccgcataata tcacaggacc ccagatggtc
      901 tatctccaaa agccatctag accctccagg acctggcctc tggaggcctt gtgtggtttg
      961 aatggcagcc tcccagctgg ccgcgctgga aggagaggag ttgggggctg gcgagccagc
     1021 cctaacgaag gccagccctg ccgtcttgta ctctgagggc cagcggctgg cactcgaagc
     1081 cctgctgagc agtggcgagg agactttctg ggcctgtgtg cagcaggaga ggttgccccc
     1141 ctttctgagt gcagatgagg ctcaggccct ggctacggct gctgaagact ggctagtacc
     1201 tagccaggag cctggtgcag caggcacggg aacagccatc accgatgggg acgtgggcag
     1261 cctgacctac tggccgaggc aatctgagga gccggcaccc ctgctgcggc ttggctggcc
     1321 tgaagacact gcctggaagg gcatcacccg ggcgcaactc tacacccagc caccaggcga
     1381 gggccaacca cccattaaag agttggtaca ccaggaaatc caggctgctc gaaagctggt
     1441 ggctgtagtc atggatgtct tcaccgaccc tgacctgctc agagacatgg tggatgctgc
     1501 tacccgccga tggattcctg tctacttact gcttgaccac cagcatctgc ctgccttcct
     1561 ggcactagcc cagcagttag gggtgaacct gtggaccact gagaacctgg atatccggac
     1621 cgtgcagggc cacaccttcc agagccgcag gcgacggcag gtgagcggcc atgtgcggga
     1681 gaagttcgtg ctcctggacg gtgacagggt catctcggga tcctacagct tcacatggag
     1741 tgactcacgc ctgcaccgga gcctggtgac cttgctcaca ggagaaattg cagatgcctt
     1801 caaccaggag ttccgtgtcc tgtacgcagc ctccaggccg ctctctgcag ctccggctcg
     1861 aagccctttg ttcagtcctc ctgagggccc acagctgccc cgaagcccac accgtgtggc
     1921 cctgcgctgt cctgtggccc ctgtagcccc attgctgtct gatgggcctt tggctcaacg
     1981 cctggctgcc tgtcacatcc tcgagcggga caaacaggag acccccacca ccacggggcc
     2041 agctctcagt gacatcttga ggagtgtaca gcgcaccagg acaaccagtg gtcccccgac
     2101 ccgacccagc cgctccctat gggaccttag ccgcctgtcc cagctctctg gctcaagtga
     2161 tggtgaaaat gagtccaaga agttctgggt ctccaaggac actccagcca gggccctgat
     2221 gaggcagcgg ggcactggag gtgggcccag agctgagatg gattcccgtt cacagccctg
     2281 gggtggcccc ctaccctcga ttccagcccg ccgcctgcgt tacctatccc cagcccaaag
     2341 gagattgggg gacaatgcca ccacatcaga ctgggcctct ggctcaggct ctggaaggag
     2401 acgctgacag gaaccctggc cagatgtggc tggccagcca tgggtctagt ttagagctct
     2461 aaccagacat tggctgtatg tgaggcctgt agtctaggat cttggcagca gaagggactg
     2521 gtcttaattg ctctagaatt gggtgagctc actaagagct tggtgttgcc atctgggaaa
     2581 tgggcagaga ggtccagagc agcagacagg actgctgcag agacaggctc agctgcctca
     2641 ccatgtacta tataaagaga tagtggggca accccacgac agagaagaca tagataaagt
     2701 tgagtccagg agaggagaat taatgggggt agaggttggg gcggggggtg atgggcaaag
     2761 ctgaaaaaaa aaaacaaagg tctggaaagt accggggata ctgagacact ggacaatgtc
     2821 tggagttttc tgtgggagct aagggaaggc ttcagagcat gtccctgtat tctactcgga
     2881 ttaaactcca acagcacaga
//
