LOCUS       NM_029784               2883 bp    mRNA    linear   ROD 22-SEP-2024
DEFINITION  Mus musculus family with sequence similarity 81, member A (Fam81a),
            mRNA.
ACCESSION   NM_029784 XM_135000
VERSION     NM_029784.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2883)
  AUTHORS   Kaizuka,T., Hirouchi,T., Saneyoshi,T., Shirafuji,T., Collins,M.O.,
            Grant,S.G.N., Hayashi,Y. and Takumi,T.
  TITLE     FAM81A is a postsynaptic protein that regulates the condensation of
            postsynaptic proteins via liquid-liquid phase separation
  JOURNAL   PLoS Biol 22 (3), e3002006 (2024)
   PUBMED   38452102
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2883)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   3  (bases 1 to 2883)
  AUTHORS   Banerjee,S., Wang,Q., Zhao,F., Tang,G., So,C., Tse,D., To,C.H.,
            Feng,Y., Zhou,X. and Pan,F.
  TITLE     Increased Connexin36 Phosphorylation in AII Amacrine Cell Coupling
            of the Mouse Myopic Retina
  JOURNAL   Front Cell Neurosci 14, 124 (2020)
   PUBMED   32547367
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 2883)
  AUTHORS   Ling,K.H., Hewitt,C.A., Beissbarth,T., Hyde,L., Banerjee,K.,
            Cheah,P.S., Cannon,P.Z., Hahn,C.N., Thomas,P.Q., Smyth,G.K.,
            Tan,S.S., Thomas,T. and Scott,H.S.
  TITLE     Molecular networks involved in mouse cerebral corticogenesis and
            spatio-temporal regulation of Sox4 and Sox11 novel antisense
            transcripts revealed by transcriptome profiling
  JOURNAL   Genome Biol 10 (10), R104 (2009)
   PUBMED   19799774
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC157950.2.
            
            [WARNING] On Oct 7, 2024 this sequence was replaced by NM_029784.3.
            
            On Nov 17, 2006 this sequence version replaced NM_029784.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK044090.1, AK038532.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-245               AC157950.2         122930-123174       c
            246-342             AC157950.2         107804-107900       c
            343-616             AC157950.2         106541-106814       c
            617-735             AC157950.2         91875-91993         c
            736-865             AC157950.2         84437-84566         c
            866-972             AC157950.2         80705-80811         c
            973-1108            AC157950.2         77668-77803         c
            1109-1301           AC157950.2         75108-75300         c
            1302-2883           AC157950.2         70927-72508         c
FEATURES             Location/Qualifiers
     source          1..2883
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 39.27 cM"
     gene            1..2883
                     /gene="Fam81a"
                     /gene_synonym="6430514L14Rik"
                     /note="family with sequence similarity 81, member A"
                     /db_xref="GeneID:76886"
                     /db_xref="MGI:MGI:1924136"
     exon            1..245
                     /gene="Fam81a"
                     /gene_synonym="6430514L14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            246..342
                     /gene="Fam81a"
                     /gene_synonym="6430514L14Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             332..1426
                     /gene="Fam81a"
                     /gene_synonym="6430514L14Rik"
                     /codon_start=1
                     /product="protein FAM81A"
                     /protein_id="NP_084060.1"
                     /db_xref="CCDS:CCDS40679.1"
                     /db_xref="GeneID:76886"
                     /db_xref="MGI:MGI:1924136"
                     /translation="MHLRRVKTMPRHSQSLTMAPYSSVSLVEQLEDRILCHEKTTAAL
                     VEHAFRIKDDIVSSLQKMQNKGGGDRLARLFLEEHIRNITAIVKQLNRDIEVLQEQIR
                     ARDNISYGTNSALKTLEMRQLSGLGDLRGRVARCDASIARLSAEHKSTYEGLQHLNKE
                     QQAAKLILETKIKDAEGQISQLLSRVDLSISEQSTKLKMSHRDSNHQLQLLDTKFKGT
                     VEELSNQILSARSWLQQEQERIEKELLQKIDHLSLIVKENSGANERDVEKKLSQMSAR
                     LDKIEESQKRNAEGQRKPDEEKVHGRISKLELQMTEDMKEMKAEVNAGFSAIYESIGS
                     LRQVLEAKMKLDRDQLQKQIQQMQKPETAM"
     exon            343..616
                     /gene="Fam81a"
                     /gene_synonym="6430514L14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            617..735
                     /gene="Fam81a"
                     /gene_synonym="6430514L14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            736..865
                     /gene="Fam81a"
                     /gene_synonym="6430514L14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            866..972
                     /gene="Fam81a"
                     /gene_synonym="6430514L14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            973..1108
                     /gene="Fam81a"
                     /gene_synonym="6430514L14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1109..1301
                     /gene="Fam81a"
                     /gene_synonym="6430514L14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1302..2883
                     /gene="Fam81a"
                     /gene_synonym="6430514L14Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1608..1613
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fam81a"
                     /gene_synonym="6430514L14Rik"
                     /note="hexamer: AATACA"
     polyA_site      1628
                     /gene="Fam81a"
                     /gene_synonym="6430514L14Rik"
                     /note="major polyA site"
     polyA_site      2344
                     /gene="Fam81a"
                     /gene_synonym="6430514L14Rik"
                     /note="major polyA site"
ORIGIN      
        1 tccagctcgg gctgccacgg caaccgcgtc caggcaacgc gcccggaaga ggctctggga
       61 ggcgcgcggc ggctcgcgcc cttccagggt gggggagccg cgaaccccgg gccgggccgc
      121 gcgcgcgctg attggagcgc gggcccgcag ccgggttcgc cccgcaaagc cccgcgctcg
      181 cggccaccgc acccagagcg ccggcgacga catgggcagc ctcggcgcgc cagatccgcg
      241 cgcggatgtg aattattaag aagaaaatgg cccaacagga caccgtactt ccttctcttg
      301 tcaaccagga agggtatact atctggaaaa tatgcatcta aggcgagtga agaccatgcc
      361 ccgacacagc cagtccctga ccatggcgcc gtactcttct gtgagtctgg tggagcagct
      421 ggaagacagg atcctctgtc atgagaaaac cacagcagca ctggtggagc atgccttccg
      481 catcaaagat gacatcgtca gcagtttgca gaagatgcag aataaagggg gaggtgaccg
      541 cttagccagg ctgttcttgg aagagcatat cagaaacata accgccattg tgaagcaact
      601 gaatcgggat attgaggttc tccaggagca gatccgtgcc agggacaaca tcagctatgg
      661 aactaattct gccttaaaga cgctggagat gcgccagctc tctggcttgg gagatctccg
      721 aggaagagtt gcaaggtgcg acgccagcat agccaggctc tctgccgagc ataagtcgac
      781 ctacgaggga ctccagcact tgaacaagga acagcaagca gccaagctta tcctggaaac
      841 aaaaatcaaa gacgcagaag gacagatttc tcagcttttg agcagagtgg acttgtccat
      901 ctcagagcag agcaccaaac tgaagatgtc ccacagggac agcaaccacc agctccagct
      961 cctggacact aaatttaaag gcaccgttga agagctcagc aaccagattt tgtctgcacg
     1021 gagttggctg caacaagaac aggagcggat agagaaagaa cttctgcaga aaatagacca
     1081 tctctccttg attgttaagg aaaacagtgg agccaatgaa agagacgtag agaagaaact
     1141 cagccagatg tcggccaggc ttgacaaaat cgaagagagt cagaagagga atgctgaagg
     1201 acagagaaag ccggacgagg agaaggtgca cgggcggatc agcaagctgg agctacagat
     1261 gacggaggac atgaaggaga tgaaagcgga ggttaatgcc gggttctcag ccatctatga
     1321 gagcataggg tccctcagac aagtgctgga ggccaagatg aagctggaca gggaccaact
     1381 tcagaagcag atccagcaga tgcagaagcc agagaccgcc atgtgaagac ggctgggaca
     1441 aggacctgac aggagactgc acgtggggct aagagccaga tggctctgca gccacatcgt
     1501 ggctatgttc cggatcccat ccagggtgtg catgtgccaa gaaatgcgct ctcatgggtc
     1561 taagcgttta ccttcagtct tgaaaacacc ctttacttaa aatcgtaaat acaattttta
     1621 caacgttatt tccctaagtg cagttgagcc cgattccctc agattttgaa aggcttttat
     1681 gaatgaaaag aatttatttt caatgcttga tgctctagcc aagactacta ttttggaaaa
     1741 aaaaaaaaaa cccaccatgg tgatttttct tttgattaaa aagtgaatga gttgctacag
     1801 gtatgtattg cccctcaccc tacattaaga gaagtcctgg tagagttcag ctttaagtcc
     1861 acatctggat tgtatttttg ttgtctatat ggtttttttt ttttaaatgt tgggtttttt
     1921 tttttttttt ttttttgtaa atcacctgtc ttttgtagag aagaagttta acactgggag
     1981 agaaaaaaaa aagccctgca atttatataa tgaaaatagt tttttaaaat tgataattgc
     2041 catacagatt ataaattaag tagaaactta caacgtttat ctagatccca caaggcacga
     2101 tatttatatc cacctagggg taccggcttt tactatttaa agctattttt gaaaccactc
     2161 acaacctgtg tagtgatagc catatattta ataatgggat ggtggctaag caacctgttt
     2221 atcgaacagc taattgttca tcagttgtaa tgaatgttag aatttttcag actttacgat
     2281 ttacctaaat gttccctaaa caggcactac gtgctagggt ttatagacat ttgttgtaac
     2341 tgtctatctt gtgccttggt tttttttctt acgtcgctgt actgtcctct gtaaaaaaaa
     2401 aaaagaaatt acccacaaaa tagacagtgt ggtaaacaca tcagggttgt ggtgtaagac
     2461 tgagatccta tgtaatttta agcatcctaa tgatttcatc gctgtcatgg tgggccgcac
     2521 tcagcatcct tcatggaata gctgcacaca cctttgtatg gacagagagg caaagcgaga
     2581 ctacatttgt aatactgcga ggagacgggt gtcccggcac ctttgcaggc gttttatttt
     2641 cagttgccat gtttgagtca ttgaagactt gagcctgtgc catttgcact tctgtgttaa
     2701 agtgagggca cagagagaga gagggagaga gagagagaga gagagagaga gagagagaga
     2761 gagaacagga gcatttaaaa gttccaagaa caacacccca tcctttcctt tcctctctca
     2821 tgtgcaagga ctcaggaaaa tcaaaagcat tttctatttc tagaataaac cacactgaga
     2881 ttc
//
