LOCUS       NM_001399461            4446 bp    mRNA    linear   ROD 12-JUN-2024
DEFINITION  Mus musculus family with sequence similarity 78, member A (Fam78a),
            transcript variant 5, mRNA.
ACCESSION   NM_001399461 XM_011239096
VERSION     NM_001399461.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4446)
  AUTHORS   Magdaleno,S., Jensen,P., Brumwell,C.L., Seal,A., Lehman,K.,
            Asbury,A., Cheung,T., Cornelius,T., Batten,D.M., Eden,C.,
            Norland,S.M., Rice,D.S., Dosooye,N., Shakya,S., Mehta,P. and
            Curran,T.
  TITLE     BGEM: an in situ hybridization database of gene expression in the
            embryonic and adult mouse nervous system
  JOURNAL   PLoS Biol 4 (4), e86 (2006)
   PUBMED   16602821
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL928893.10.
            
            On Jan 7, 2022 this sequence version replaced XM_011239096.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR11927936.877314.1,
                                           SRR11927934.4603916.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-514               AL928893.10        170798-171311       c
            515-1539            AL928893.10        169176-170200       c
            1540-4446           AL928893.10        153459-156365       c
FEATURES             Location/Qualifiers
     source          1..4446
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 22.0 cM"
     gene            1..4446
                     /gene="Fam78a"
                     /gene_synonym="A130092J06Rik"
                     /note="family with sequence similarity 78, member A"
                     /db_xref="GeneID:241303"
                     /db_xref="MGI:MGI:2443569"
     exon            1..514
                     /gene="Fam78a"
                     /gene_synonym="A130092J06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            515..1539
                     /gene="Fam78a"
                     /gene_synonym="A130092J06Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             1217..2068
                     /gene="Fam78a"
                     /gene_synonym="A130092J06Rik"
                     /codon_start=1
                     /product="protein FAM78A"
                     /protein_id="NP_001386390.1"
                     /db_xref="GeneID:241303"
                     /db_xref="MGI:MGI:2443569"
                     /translation="MPCYFWDCWPSLEIRAVLCAMGCIQSIGGKARVFREGITVIDVK
                     ASIDPIPTSIDESSSVVLRYRTPHFRASAQVVMPPIPKKETWIVGWIQACSHMEFYNQ
                     YGEQGMSSWELPDLQEGKIEAISDSDGVNYPWYGNTTETCTIVGPTKRDSKFIISMND
                     NFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATNTSTNDMIILQTLHWRMQLSIE
                     VNPNRPLGQRARLREPIAQDQPKILSKNEPIPPSALVKPNANDAQVLMWRPKYGQPLV
                     VIPPKHR"
     exon            1540..4446
                     /gene="Fam78a"
                     /gene_synonym="A130092J06Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2157..2162
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fam78a"
                     /gene_synonym="A130092J06Rik"
                     /note="hexamer: AATACA"
     polyA_site      2176
                     /gene="Fam78a"
                     /gene_synonym="A130092J06Rik"
     regulatory      4426..4431
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fam78a"
                     /gene_synonym="A130092J06Rik"
                     /note="hexamer: AATAAA"
     polyA_site      4446
                     /gene="Fam78a"
                     /gene_synonym="A130092J06Rik"
                     /note="major polyA site"
ORIGIN      
        1 gcctacccgc ctgcacgcta ccgcctgcgg acctgcatcc cacggggcgc acgggcgagc
       61 gcaggtcctg cgtgcgccgg tgcgcgttgt cgcgcggctg cggacgaaca caggggccag
      121 acaggcgcag ggaccgagtt tctgcaaagt ttgacctggt tgcctttccg atgctgcagc
      181 agagcgaggc ggcgcggggc gcgccaggcg gctgcggcgc ggcggcgggg cagagcggtg
      241 acagcacgct cataatgatc ataaaataag gaggcgctcg gggtgggggc gagagagccc
      301 cgagcctcag ccctccgccc ccggccatcc ccacagcagc ccggagccag gaggggcttg
      361 gggatccgag gcgcccacgc catccccgga ccctagtaga taagagccag gggacactgc
      421 ccaggggagg gggcgccccg aaaacgtgcg ggcagagagg ttagggaaga ccggagggcg
      481 gtgacccagg cacctggagc ggccctaggg gcaggtcctc ggcggccgag gcgaagcagg
      541 cggcggcgga tatccgagtg cagtcccgga gccctgcgcg gcagtcagcg gctacagcga
      601 cagtggcaga ggaacgcgcg agtgggcgcc ggaggggacc tggcgagcac ctaacccgga
      661 gcgcacctct cggaagggcg ggtggatacg ggcctcacag gacgtcggac ctctgccgct
      721 tgaatcggag ctcacgctgc aattgattgg gccccgccgg gcgggcgcgt gtgttccagg
      781 gagccggtgc ggaaggcaga agggcaggaa gtcggcgttc tgcagcgagg gtggcgcgac
      841 cgcgcgggga ccgagccttc cttatttatg tgcctggcag agcccgtctg cttcctgcga
      901 agacttcagg gagagtgtcc gagctgccat ccccaagtgt gaggacgcag cgctggatgt
      961 cagaaaaaca tgcttctcca ttaaactcca aacttttctt tttttaaacc caaagaatat
     1021 cggtggcttt tgcccactgc tagaagaggg agcccagggc tcttgagatg caacagaacc
     1081 catatttata acaggacccg gcagtgctat gcaaacctcc tctactcctt aagttctcta
     1141 gcctatggat ctcgattttg agttttgaga ttagattgag cgctctgcac tgggtcctgc
     1201 aacctccatc ctttcaatgc cctgttattt ttgggactgc tggccttccc tggagattag
     1261 agcggtcctg tgtgccatgg gctgtattca gagcatcgga ggcaaagcca gagtcttccg
     1321 ggaagggatt accgtgattg atgtgaaagc ctccatcgac cccatcccca ccagcatcga
     1381 cgagtcctcc agcgtggtat tgcgctatcg gacaccccac ttccgggcct cagcccaagt
     1441 ggtcatgccg cccattccca agaaggagac ctggatcgtt ggttggattc aggcgtgcag
     1501 ccatatggag ttttacaacc agtacgggga gcagggcatg tctagctggg agctccccga
     1561 cctccaggaa ggaaagatcg aggccatcag tgactctgat ggggtgaact atccctggta
     1621 cggcaatacc acggagacct gcacgattgt ggggcccacc aagagggact ccaagttcat
     1681 catcagcatg aacgataact tctaccccag cgtcacgtgg gccgtgcccg tcagtgagag
     1741 caacgtggcc aaactgacca acatctaccg ggaccagagc ttcaccacgt ggctggtggc
     1801 caccaacacc tccaccaatg atatgatcat cctgcagacc ctgcactggc gcatgcagct
     1861 gagcatcgag gtgaatccca accggcccct gggccagcgc gccaggctgc gggagcccat
     1921 tgcccaggac cagcctaaaa tccttagcaa gaatgagccc atcccgccca gtgccctggt
     1981 caagcccaac gccaacgatg cacaggtcct catgtggaga cccaagtacg ggcagccact
     2041 ggtggtgatc ccgcccaagc accggtaaca gccaggctgc tgcgaggtga gactcaacgt
     2101 agtaacaata ttactgctca gaaggaaacc cagatgccct gtcggtcatt cagaaaaata
     2161 caaccattct accttctccc ggggcggatc tcactgtgct aaaaccggcc ggcctcctgg
     2221 ctcctccacg tgcttccctg cagggagggg ggagccaggg acaacaggcg cccacccacc
     2281 ccacccccag ggctcctctc ctcctatcac aacctcagtg ttcattgact ctccgaaaca
     2341 ccgctttttt taattttccc ctcctctttg tggatgcagg ggcaggggag gaggctggtt
     2401 gtcaggggac ccagcctgct cttcctgcct cccctctgcc tcccctctgc catgcggcct
     2461 tatgtagact tgctttgcca aacttttgcc ttaagctgaa tttaaaggag agaaagaact
     2521 ggaaaggcca cggatctctg ccctacagga cttgccctct tcagtcagag ctgggaagag
     2581 gggaggctca cctgaaccct gctcctcctc ctgggcgtct gcgtgagggg gcaagagagc
     2641 gatctcaggt ctaaaaccag ctgttttatc ctgttgtttg tgcagaatca aaaccacaga
     2701 ctcttcctag agcttctatt ccaccccagt agaacccctc cccagtacct gccgggggtg
     2761 ggggtacgag ctgagcaggg catagatcct tgaccccacc cctctcctca gtagccttaa
     2821 gttgcctgat ggaggtattc tgggagaaga gtccccaaag tgttgggttg gagctaggta
     2881 acgttttcac ctttgctatc tctagaaccc acccctagga atgtggcttt ttctcttcca
     2941 ttatcttggt cccaaatgcc tggcagggtt ggggttgggg cattgccact gagtctggac
     3001 agtcccagct gtcttaaggt aaagatggca tgccctttcc tcctggccag cactatcaca
     3061 cttgaatctg gggttccagc acccagggat gcccatacgc tagcacactg taaagaagcc
     3121 atatcagagc ttctggttca ttctcagggg aagcggctcc cggactctct ggggtgggct
     3181 gcatatagga gctaagcacc agctggaggg tgcttaggtc cctcccctcc ccatcatagg
     3241 tgctcctggg gaggtggagg tctggggagc aagcagtcag ctgactcacc tgggaggtgt
     3301 caggccattg tgaaactggc ttgacacatg gtaggcagtc ttggggtctc ccttctggag
     3361 ccctagaact tgtccttgag tgatgccatg gtttctagaa atgtctgctt tgagctgctt
     3421 gagggacact ccgttaagcg tactaacagc tgcatcactg gattcgaacc agtaataagc
     3481 acagaaaact gttatcacaa gaaaaagaat gtttttgctg ctgctgagcc atttgtaggg
     3541 gagcctcgga gacagcatgg gaggtacagc tagatcccag ctctatttct acacttgaga
     3601 cgcttgtcct tccagggtac ttaatgtctg gtcattctca gccactaggg ctgggggctg
     3661 cagtcacctg gagcacaccg aacagatcat gcccatggca cagttggctg gagagccact
     3721 tgtcagggct ggacctccct ggagccttct ctttctctat gtcatcttag ctgggagagc
     3781 catgaggtct cagccccaca ctagatcagg gttggctggt gactggaaag gccttctctg
     3841 tgttcaggac ttccttgccc tgaagaaaag agacaggccc tggtgagggt tgggagcgag
     3901 tccttgtcct gggctgagtg ctctctaaag gtttggtggg aataaggatt aggaatcaca
     3961 gtaggggtgg cccgaactgc tctggacatg gggaccccca aacccacata tcttgcgctc
     4021 cttccccact gcatgcctgg ctttgcccac ctggcttcct tggctccccg ttcctctctc
     4081 ccctcctgcc tgacagaaga cagacagggc tagggagaac cccagagagg ctgtgtgggt
     4141 ctgggcgaga acactcagct tctcttgggt tggtcccctc ggtccattgc ctcatgttgt
     4201 tgacagaccc caggcttccc tctactgctg tccttcacac ccatgcccat ccgggcatgg
     4261 acactcactg tttctagcaa taagcaccaa ctgtccttgg tcacggacag tactgtgaac
     4321 acgaacccat gcgtgcactt accagcaggc gcgagactct tgaagacaat gtcaaagaaa
     4381 cctttttttt tttaaaaaaa gattaaaata aaagatatgt agagaaataa aattaatttt
     4441 aaagca
//
