LOCUS       NM_001033478            1505 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus family with sequence similarity 47, member E (Fam47e),
            transcript variant 1, mRNA.
ACCESSION   NM_001033478 XM_888941 XM_898338 XM_898347
VERSION     NM_001033478.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1505)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1505)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1505)
  AUTHORS   Evsikov,A.V., Graber,J.H., Brockman,J.M., Hampl,A., Holbrook,A.E.,
            Singh,P., Eppig,J.J., Solter,D. and Knowles,B.B.
  TITLE     Cracking the egg: molecular dynamics and evolutionary aspects of
            the transition from the fully grown oocyte to embryo
  JOURNAL   Genes Dev 20 (19), 2713-2727 (2006)
   PUBMED   17015433
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK144479.1, DV648863.1, BC147168.1, AK050399.1 and AC123850.3.
            
            On Jan 1, 2010 this sequence version replaced NM_001033478.1.
            
            Transcript Variant: This variant (1) encodes isoform 1.
            
            CCDS Note: The coding region has been updated to extend the
            N-terminus to one that is supported by available conservation data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK144479.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849386, SAMN01164134
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-146               AK144479.1         1-146
            147-182             DV648863.1         207-242
            183-543             AK144479.1         183-543
            544-917             BC147168.1         42-415
            918-1499            AK050399.1         436-1017
            1500-1505           AC123850.3         161292-161297
FEATURES             Location/Qualifiers
     source          1..1505
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 47.09 cM"
     gene            1..1505
                     /gene="Fam47e"
                     /gene_synonym="C730043O17; Gm1381"
                     /note="family with sequence similarity 47, member E"
                     /db_xref="GeneID:384198"
                     /db_xref="MGI:MGI:2686227"
     exon            1..174
                     /gene="Fam47e"
                     /gene_synonym="C730043O17; Gm1381"
                     /inference="alignment:Splign:2.1.0"
     exon            175..319
                     /gene="Fam47e"
                     /gene_synonym="C730043O17; Gm1381"
                     /inference="alignment:Splign:2.1.0"
     exon            320..421
                     /gene="Fam47e"
                     /gene_synonym="C730043O17; Gm1381"
                     /inference="alignment:Splign:2.1.0"
     exon            422..502
                     /gene="Fam47e"
                     /gene_synonym="C730043O17; Gm1381"
                     /inference="alignment:Splign:2.1.0"
     exon            503..658
                     /gene="Fam47e"
                     /gene_synonym="C730043O17; Gm1381"
                     /inference="alignment:Splign:2.1.0"
     exon            659..736
                     /gene="Fam47e"
                     /gene_synonym="C730043O17; Gm1381"
                     /inference="alignment:Splign:2.1.0"
     exon            737..1505
                     /gene="Fam47e"
                     /gene_synonym="C730043O17; Gm1381"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1479..1484
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fam47e"
                     /gene_synonym="C730043O17; Gm1381"
                     /note="hexamer: AATAAA"
     polyA_site      1503
                     /gene="Fam47e"
                     /gene_synonym="C730043O17; Gm1381"
                     /note="major polyA site"
ORIGIN      
        1 gggcctgggc tcagtgtcac ttcagcagag agactctctc tgtagaaatt ggatgctgtc
       61 ctgcatccag ccgcttccca ccttacattt tctttgcatc atccgtgagc acctggcatg
      121 tgattgtctg cctcgatgtc tctctccatc ctgcatagcc gaagccacgc aaaggcctaa
      181 gaagacgctg atctcacgtt caggccagtg gctttgtgaa gaaaagtcaa gcaaagtgga
      241 ttcactctat aaagacagac tcctccatga tgacgtacac agaggagtca ccgacttctg
      301 ccactgggcc gaggaccttg gaagctctgc cattgaggaa gagttcgtcc tgcagcagtt
      361 tgacatcggc tatcagacta gacgcagctg tgatgcgctt ctcaggctga ggctgaacca
      421 ggacaaactc ttcatcaata gaccaccttc cctgcgagaa cactgtgggc actggagtga
      481 acctcggtcc tctggaagag caaatcctca gaagccgaag cgggtaaaga tgaggtacgg
      541 agcctggtac ctgaacacca gcttgtggaa gaggcaaaga gcggatgaac ctctggtcga
      601 ccccatggtc tcacacaaag ctcaagattc aacctttaaa gagcagcttc aggagcaggg
      661 ggagctgctt gcaggcctgc gagggacagc agcctttaag gacttcattc taagcagggg
      721 ctacaggatg cccaggttcc ttgagaagat atatgcggag gagaaaaata aatctgaaaa
      781 tattaaggct cctaaaaaac tcacgcaaac agagaagaat cccgggagca gatgagtcgg
      841 ctttgattga cagcatcctt ggatactgcc ccattagttt aattaataag tagaatatag
      901 cagtgccctc cgtgaaggct tcaacctggc agcatctaca aatataaaac tgaacacaaa
      961 tgtctttcta aacagctttt taaaggcttt agggtttttt tgtagtattt ttagttatgt
     1021 acagctgtgt atgtctgcat gtgggtaggt gcacacaagt ctaggagcct tcagaagcct
     1081 gaagcgttga atgccctgga gccgcagtta cagagggttg tgagccacca tgtgggtgct
     1141 gggaactgaa ccttggtcct ctcgacgaac agtgagctgt cccgatggct gatccatctc
     1201 tccagcctcc actgatcaat gttttgtttg cttgtttgtt tggtttgggg gtttggcctt
     1261 ctttagggag agtcttgcta tgtggcctag gctgacctct aattagtcat ccccctgtgt
     1321 tagcctctca gggtctagag ttgcagctct gcaccaacac acctggtgca caaaataata
     1381 cattttgtat atttaccaac tatgggctca atattcgtgt gtagtcctct cacgctttcg
     1441 tgttatgaag atgccataaa tgattgattt cttgtaaaaa taaaatcata ggcaaagtca
     1501 caatt
//
