LOCUS       NM_027482               1603 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus family with sequence similarity 241, member A
            (Fam241a), mRNA.
ACCESSION   NM_027482
VERSION     NM_027482.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1603)
  AUTHORS   Welsh,I.C., Kwak,H., Chen,F.L., Werner,M., Shopland,L.S.,
            Danko,C.G., Lis,J.T., Zhang,M., Martin,J.F. and Kurpios,N.A.
  TITLE     Chromatin Architecture of the Pitx2 Locus Requires CTCF- and
            Pitx2-Dependent Asymmetry that Mirrors Embryonic Gut Laterality
  JOURNAL   Cell Rep 13 (2), 337-349 (2015)
   PUBMED   26411685
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC163391.4.
            
            On Jun 18, 2009 this sequence version replaced NM_027482.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK162420.1, AK017758.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-290               AC163391.4         3946-4235
            291-1603            AC163391.4         29269-30581
FEATURES             Location/Qualifiers
     source          1..1603
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 56.54 cM"
     gene            1..1603
                     /gene="Fam241a"
                     /gene_synonym="2700063A17Rik; 5730508B09Rik"
                     /note="family with sequence similarity 241, member A"
                     /db_xref="GeneID:70617"
                     /db_xref="MGI:MGI:1917867"
     exon            1..290
                     /gene="Fam241a"
                     /gene_synonym="2700063A17Rik; 5730508B09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            291..1603
                     /gene="Fam241a"
                     /gene_synonym="2700063A17Rik; 5730508B09Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      872..877
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fam241a"
                     /gene_synonym="2700063A17Rik; 5730508B09Rik"
                     /note="hexamer: AATAAA"
     polyA_site      895
                     /gene="Fam241a"
                     /gene_synonym="2700063A17Rik; 5730508B09Rik"
                     /note="major polyA site"
     regulatory      1458..1463
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fam241a"
                     /gene_synonym="2700063A17Rik; 5730508B09Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1481
                     /gene="Fam241a"
                     /gene_synonym="2700063A17Rik; 5730508B09Rik"
                     /note="major polyA site"
ORIGIN      
        1 gagcggctga caggaggggc gggcggctcc tgcacttctg gcccccaggc cggcgggcgc
       61 gcttctaagg attcccgtgt gcgtcgggag tcccggtgtg gccagcggca gccgtgcggg
      121 cggccggagt cggcggtggg atgtgctcgg ccaggaagct gctgcggggc ggcgccggca
      181 gcgccggcgg ggagtgcgac gaggacgggg cggcgccggc cgggcgggtt gaggagccgg
      241 agcacggggc gagcccgcgg cgccggcggc cgcaggacga gggcgagcag gatattgaag
      301 aaccacaaaa ccactctggc gaacccattg gagatgacta caaaaagatg ggaacacttt
      361 ttggtgaact gaacaaaaac ctcctcaaca tgggcttcac aaggatgtat tttggagaac
      421 gaattgtgga accagtagta gtccttttct tttggcttat gctatggttc ctgggcctgc
      481 aagcccttgg actcgttgcc gttctttgcc ttgtcattat ttatgtacag cagtaaaaca
      541 ccagacattt gatagccatg tatgtaactg atatacactt gggctttttg aaagccaaaa
      601 tagtttgaca tatttcctat tgtgtactgg ctattttgta atttaaatta taaatgagtg
      661 ttctttaaaa ctcaactctt tgttacaaca aggatgaata tatatatttt tgactatata
      721 ttagcctatt aaaactcttt ttcactcctg tgatctgtac ctactgttag atactgcttt
      781 cccatgccaa atctgaatat cacaaaacag caacagggca aatagcatgg catggggttg
      841 cagtgagatg gtgtagttct tgtaaagtta caataaaaac atgttgaaag gaaaagagac
      901 ctgtagctaa gaataagttt taattggaaa actcttccac ctgcacctca gttgaaaaat
      961 cccattttgg gaatatattt gtctctgtta tctctgcgta gtccaaaaca aagtaaatgg
     1021 taccgctgtc gtgctgcgaa ggtgagaacg ctagtgtctt caaactgaaa ataatatatt
     1081 tattattgtt gctaacgttt ttgggttaaa tgtaagtttt tatgtgttgt actcaggcct
     1141 tcctgggatt gtaaagttag agatgattct ggtgctaatt tctttttgtg agtcccacgg
     1201 ccggccgggt gcctggcagt gtctgccata ctgtccctag ccgcttgcat gtgtttttct
     1261 agagacattt tcagtgcatt tctttcccaa aagttcataa ttttatagtt cttttcaaac
     1321 aattactctg agatgtaaaa cagtgcattt tctgtcatgg catggagttt tcctcccaaa
     1381 agagtaattt ctatctattt aaaaaaaaaa tcaaataatt tttctttgat atctgtattg
     1441 aagagtacaa acttcagaat aaaatcacat gtttaaatct agaactcagt agccacttgt
     1501 aatattctag gattaaagcc aattgtccag tcatgtttct aatgtatagt atggggtttt
     1561 attatactga aacaagcatt tctttaaata cattttgaaa atg
//
