LOCUS       NM_001382825            2472 bp    mRNA    linear   ROD 12-OCT-2024
DEFINITION  Mus musculus family with sequence similarity 228, member B
            (Fam228b), transcript variant 1, mRNA.
ACCESSION   NM_001382825 XM_011243844
VERSION     NM_001382825.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2472)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CT025683.13.
            
            On May 22, 2020 this sequence version replaced XM_011243844.3.
            
            Transcript Variant: This variant (1) encodes the longest isoform
            (a).
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.4362767.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849381 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-329               CT025683.13        117729-118057       c
            330-461             CT025683.13        117213-117344       c
            462-530             CT025683.13        112902-112970       c
            531-722             CT025683.13        111823-112014       c
            723-803             CT025683.13        111150-111230       c
            804-891             CT025683.13        97087-97174         c
            892-1048            CT025683.13        96844-97000         c
            1049-1153           CT025683.13        94475-94579         c
            1154-2472           CT025683.13        88712-90030         c
FEATURES             Location/Qualifiers
     source          1..2472
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 2.09 cM"
     gene            1..2472
                     /gene="Fam228b"
                     /gene_synonym="A830093I24Rik"
                     /note="family with sequence similarity 228, member B"
                     /db_xref="GeneID:207921"
                     /db_xref="MGI:MGI:2442121"
     exon            1..329
                     /gene="Fam228b"
                     /gene_synonym="A830093I24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            330..461
                     /gene="Fam228b"
                     /gene_synonym="A830093I24Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             354..1289
                     /gene="Fam228b"
                     /gene_synonym="A830093I24Rik"
                     /note="isoform a is encoded by transcript variant 1;
                     UPF0638 protein B; protein FAM228B"
                     /codon_start=1
                     /product="protein FAM228B isoform a"
                     /protein_id="NP_001369754.1"
                     /db_xref="GeneID:207921"
                     /db_xref="MGI:MGI:2442121"
                     /translation="MTTMKNRSQDDMVTGTLPKLKSSKEWLEPQSLSFMEALAKEDTD
                     AAVQSILYRENYIMKELDKYLHHQDFLNTRRKEMLYKKWVERVADPLQKKIIEKVHSH
                     KNIKKRRRQELDNFLKHSNKKGNAFIEHYDPKEYDPFYMSKEDPNFLKVIMPPFRDPL
                     KKAQYDQDDEKRTLLQCETGKIYTMKEFKEIEKAQLHSRFPSISNSRQSMTPNGWLKV
                     PMSYIESEFCKKSRLKVKMNFNASSFDLSPLKRVPNFLEYREEEMIIYKNNGLFCVDS
                     EAPCLLERKNPSFKEVTSEGHHSVTLCQEVERDES"
     exon            462..530
                     /gene="Fam228b"
                     /gene_synonym="A830093I24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            531..722
                     /gene="Fam228b"
                     /gene_synonym="A830093I24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            723..803
                     /gene="Fam228b"
                     /gene_synonym="A830093I24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            804..891
                     /gene="Fam228b"
                     /gene_synonym="A830093I24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            892..1048
                     /gene="Fam228b"
                     /gene_synonym="A830093I24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1049..1153
                     /gene="Fam228b"
                     /gene_synonym="A830093I24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1154..2472
                     /gene="Fam228b"
                     /gene_synonym="A830093I24Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tccttttcga ctcgcctcgc tcccaggcca gagggctgca ctgctccgtg ctgttcggcg
       61 aggtgcgcgc gcgttctcgt cttcccgctg gccgaggggc gcgtaggggt ggcgccgcgt
      121 cccaggagac agaggtccga acgcccgcgc gttccgaatc caaggtctcg ggctgaggcc
      181 gcgggctcac tgtggtgcgg agagccgaag ggcaggccca ccgccagagg gggctgaagg
      241 acctgtggaa gcctgcgcgg caggacggcc cgcgcacgcg gtctgtgtcg gagccggcga
      301 atcgcgaatc gggggcccgg tactcccggc ttttctaggg actgtgttac ttgatgacca
      361 caatgaaaaa taggagccaa gatgatatgg tgacgggcac actccccaag ctcaagagct
      421 ccaaagaatg gttggaacca cagtcgcttt cttttatgga ggctttagct aaagaagata
      481 ctgatgcagc tgttcaatca attttatata gagaaaatta tattatgaag gaactagata
      541 agtatttaca tcatcaagac ttcttaaaca caagaagaaa agagatgctg tataaaaagt
      601 gggttgaacg tgtggcagat cctctccaga agaaaattat agaaaaagtt cattcacata
      661 agaacattaa aaagaggaga cgtcaagaat tagacaattt tttgaaacat tcaaataaga
      721 agggaaatgc atttatagag cattatgatc caaaagaata tgatcctttt tatatgagca
      781 aagaggaccc caattttctg aaggttatca tgccaccgtt tcgtgacccc ttgaaaaaag
      841 cccaatatga ccaggatgat gaaaaaagaa cccttctgca gtgtgagact ggcaaaatct
      901 atacaatgaa agaatttaaa gagatcgaga aggcccagtt gcattccaga ttcccgagta
      961 tttctaattc aaggcaaagt atgactccaa atggatggct taaagtgccc atgagttata
     1021 tagaaagtga attttgtaaa aagagcaggt tgaaagtgaa gatgaatttt aatgctagta
     1081 gttttgattt gagtccattg aaaagggtgc ctaattttct ggaataccgg gaggaagaaa
     1141 tgatcattta caaaaacaat gggctcttct gtgtggacag tgaagctcca tgtctcctgg
     1201 agagaaagaa cccaagtttc aaagaggtca cctctgaagg tcaccattct gtaaccctgt
     1261 gccaggaggt agaaagggat gagagctaac caggacgcgg tgagagctgg caacgttggg
     1321 cttaggttgt gacacagggc ggcactggct gacgtccaag gctacgtttc ctgatgtggc
     1381 aggctcttta taagagagca ggcaatggag catcctccag tgggcgacag ggcagaagag
     1441 actgtactcc actcagcccc accctgaccc ccatccctga ttttcttgta gacaggatac
     1501 attttgggtg aaaagttttg tgggtgggtt ggtaccccta tcactctact ggggttccta
     1561 tctggctaca ggaggtgtcc tcttcaggtt ccacatcccc agtgtagtga gtcacagcta
     1621 aggtcatccc cattgattct tgggtgcctt ccttattcca agtctctctc tggtcctaga
     1681 aatgcccccc atctctccaa ctctgtcagt tgcagatttc cattcattct tatggccaac
     1741 tggccatctc tcctgagcca gggtcttgtg attttactct tcctagcttg gaacttgctg
     1801 tatagaccag tgtgacctca gatccacaga gttgtggctg cttctaccta tggagtacta
     1861 ggattaaagg aagaccacac acacatgcac acgcacatgt tcttgatctt tttgtaaatc
     1921 atgtaactta ctttcacaca tttaaagcat agcagttctc aaaagattct aagacaagta
     1981 tattgtatta atactcagct atagttagca acatttagct tttaacttaa tgtcccagag
     2041 gaacaatgaa gttggaaggt gaattagtcc agaggtcaga gaagttacta gcttgggcat
     2101 cagtacttga gtcatcctga tatcatgtta tttgaagcca taggataatc tgagaatgag
     2161 tgtcaagaag gtctgagggc taggttctgt gagaggagtt agctctggcc agagtggctt
     2221 taaggactag ctctccttag ccaagggaca ctctggtcct gtaagcactt tatccctatg
     2281 gcactctcaa ctctttttct tttgtcactt ttcaaaggtt ttgacagcca catatcctga
     2341 ttcttgatct gtgcaagggc actgaagatg gatgctttag aggaagttac ctgctgggag
     2401 gaatcctttt gagagggaca aaggaagaca cttaaccatt ctgttctgat cttcaataaa
     2461 ctctcaattg tt
//
