LOCUS       NM_029107               2889 bp    mRNA    linear   ROD 01-AUG-2024
DEFINITION  Mus musculus family with sequence similarity 228, member A
            (Fam228a), mRNA.
ACCESSION   NM_029107 XM_484109
VERSION     NM_029107.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2889)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CT025683.13 and AK029492.1.
            
            On Feb 8, 2019 this sequence version replaced NM_029107.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK029492.1, AK133272.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164139 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-56                CT025683.13        87207-87262         c
            57-2889             AK029492.1         2-2834
FEATURES             Location/Qualifiers
     source          1..2889
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 2.09 cM"
     gene            1..2889
                     /gene="Fam228a"
                     /gene_synonym="4930417G10Rik"
                     /note="family with sequence similarity 228, member A"
                     /db_xref="GeneID:74855"
                     /db_xref="MGI:MGI:1922105"
     exon            1..231
                     /gene="Fam228a"
                     /gene_synonym="4930417G10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            232..338
                     /gene="Fam228a"
                     /gene_synonym="4930417G10Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             246..1145
                     /gene="Fam228a"
                     /gene_synonym="4930417G10Rik"
                     /note="UPF0638 protein C2orf84 homolog"
                     /codon_start=1
                     /product="protein FAM228A"
                     /protein_id="NP_083383.1"
                     /db_xref="CCDS:CCDS49018.1"
                     /db_xref="GeneID:74855"
                     /db_xref="MGI:MGI:1922105"
                     /translation="MADTKTSKCDEHFSVEKLKEWPEPESVSLMELLAREDIDEAVHA
                     VLFRENYVVKRLDTYLQHLAVFKERRKEMLHKKWVENVVQPLQQRITDKITSYRRPGK
                     NQVKYEHCLKQTNKPTKVSSSCLFQKQQEFREAKGTSYQHGRGKTHDTQKEAKETEKG
                     LSFTPFSLRPHCSSPRERQRASARLMQSKPGGRNRYKGASSEKPVFTLKSHLPKEEKT
                     VSRSQLVFERQFRASRLSQDIKEAEKKGLVVGTGPQRPRSWAAADSVPRPSLVGRRVM
                     TAEILGEHLVSLHQAARSGLQWP"
     exon            339..407
                     /gene="Fam228a"
                     /gene_synonym="4930417G10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            408..596
                     /gene="Fam228a"
                     /gene_synonym="4930417G10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            597..678
                     /gene="Fam228a"
                     /gene_synonym="4930417G10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            679..844
                     /gene="Fam228a"
                     /gene_synonym="4930417G10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            845..986
                     /gene="Fam228a"
                     /gene_synonym="4930417G10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            987..2889
                     /gene="Fam228a"
                     /gene_synonym="4930417G10Rik"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      1276
                     /gene="Fam228a"
                     /gene_synonym="4930417G10Rik"
                     /note="major polyA site"
     regulatory      2217..2222
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fam228a"
                     /gene_synonym="4930417G10Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2238
                     /gene="Fam228a"
                     /gene_synonym="4930417G10Rik"
ORIGIN      
        1 gcttcctaca cttactgact gaggctgagg taccacccac cggaactggc tgaggtagtg
       61 cgcagtgtgc ccagggcagc aaccagccac tggagagtag gccagccccg aggcaacctg
      121 ggaggcctgt gggtctgagg tgaccagtga cccgcacggg agcgtccatt tgttgggagg
      181 ggagcctgtg tcctgcggtg accagcgaac agcgtggctt gtgggcctga gggattctac
      241 tacttatggc tgacacaaaa acttccaagt gtgatgaaca tttcagtgtg gagaaactaa
      301 aggaatggcc agagccggag tctgtttctt taatggagtt attagctcga gaagacatcg
      361 atgaagctgt gcatgcagta ttatttagag aaaactatgt tgtgaagaga ttggatacat
      421 atttacagca tctggctgtt tttaaggaaa gaagaaaaga gatgttacat aagaaatggg
      481 ttgaaaatgt ggtgcagcct cttcagcaga gaattacaga taaaataact tcatatagga
      541 gacctggaaa aaatcaagtg aaatatgaac actgcttaaa gcaaacaaat aaaccgacta
      601 aagtgtcttc atcgtgtctg tttcaaaaac agcaagagtt cagagaagca aaagggacca
      661 gttaccaaca tggcagagga aaaacacatg acacacaaaa agaagccaaa gaaactgaga
      721 agggtctctc cttcaccccg ttctcgctca ggccccattg ctccagtccc agagagaggc
      781 agagagcctc tgctcggctt atgcagagta agcctggtgg caggaacagg tacaagggag
      841 ccagttctga aaaacctgtc tttacattaa agtctcatct gcctaaggaa gagaagactg
      901 tcagtcgaag ccagcttgtt tttgaaaggc agttcagagc ctcaaggctc agccaggata
      961 tcaaagaggc tgaaaagaag ggtctggttg tagggaccgg accacagaga ccacgctcct
     1021 gggcggcagc agatagtgtg ccgaggccat cactggtggg aagaagagtg atgacagccg
     1081 agatcctggg ggagcatctg gtgtccctgc atcaggcagc caggtcaggc ctccagtggc
     1141 catagagctt cacccctcca cctcttgcat gcaactgcaa atactgacgg tgcagctttt
     1201 ctctaggtag gaagctatag caagaaatat ccaaataaca gcagctagat ttttaagttc
     1261 tggctgtgat ctaggacgtc tgtgtggtgt ttttgtttca ttgaaacatt taacagcaag
     1321 ccagctttat tacctcccag tatttggtgc tcagaagggc tctgtgcctg gcttgggggc
     1381 agttcccagc tcaaaggtat taggctctat tccagctcag tcctgctcct gtgccagggc
     1441 gcactctcct cagatactca ggcgtggcag tgggaacaaa tctgtgttgc ctctgtgggc
     1501 actgaagggg ctacaggaac tcctcaccaa agggagactt gtagttgtat gcggactatc
     1561 tgcttcctga tatcaggagt ctcctcatat cctctagaaa gctggactca catttcagtg
     1621 gggaagagaa cttgacctcc tcagaggcag atctgggtca ctgggtgaag aggacaactg
     1681 gagttactgg ctgtaccctc tctggttagc aaagtcatct cactcagatc cttagggctc
     1741 ctgtgtccta aatctggcca aggtatcctg attgttgagt gacagggaca caatactagt
     1801 cacacttgcc ccagtgagga ttaaagtccc tacagggaag agtaggattg gtgtgtggct
     1861 atagttatga gggaccccag agctttaaac ttgctgtatt gccatgtcat gctacacaca
     1921 gggctgtctg cagcaactct ccctgacttc agctgcatct ggattcagca ccagcataac
     1981 atgctcccca aactcaggaa agccgagcag gcttgctcaa caggctgtgc ctggttcttc
     2041 aaagaaccct gtagataagc atgatgctgg ttgtttcagt tttgggtaaa gtctcttttc
     2101 tgttgtaacc agtggtgctg gggtcagtat ctggagtcag taagggatga gtctttaaaa
     2161 tcaatctgaa tacgctgaac tgtgttctca agtgagtagg ccagtgatta tatttaaata
     2221 aaaatgggga gaatggaaga ggcctgaggt actctctgag ctgcttggaa aaagatgttg
     2281 ccctagcagt ccaagtgatc ctttcaaagg atgaggattt tgtgttcaaa aattagttaa
     2341 atattttaaa aagttgtatt ttagtattga caggccaggt cagcagtatg gctatggctc
     2401 tgacaggaca ggagacagga tgtgatcgag accctggagg tgcagagcaa cagatgtgca
     2461 gagagtcccg acctttgccc ttcatccttc ctgtgggtca cccctttggt tcagacaggc
     2521 caagcatagc tcctatgcac ttcacccacc cacaaaagcc accagtgaaa tcaagcccca
     2581 gaaacctgac agagatgcct acaaagccct gggcaagcga gtagaagggt caggcagatc
     2641 tcttggcccc acctcacccc atccttctgg tttcattata agcaacttct gaaagtaact
     2701 gttaaaaagc cttccacata gagagtcaag ctttgaaagg attacattca taaacttata
     2761 cttttattct ctttctgtac attgttggca atgataaagc ttaaagatgc atgttctatg
     2821 aaatatgcaa aacaaagaat ttacataaat aatttatact taagaaaatt aaagttgaaa
     2881 aatatcccc
//
