LOCUS       NM_001242647            1471 bp    mRNA    linear   ROD 09-JUN-2024
DEFINITION  Mus musculus family with sequence similarity 187, member B
            (Fam187b), transcript variant 2, mRNA.
ACCESSION   NM_001242647
VERSION     NM_001242647.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1471)
  AUTHORS   Gu,Z., Imai,F., Kim,I.J., Fujita,H., Katayama,Ki., Mori,K.,
            Yoshihara,Y. and Yoshida,Y.
  TITLE     Expression of the immunoglobulin superfamily cell adhesion
            molecules in the developing spinal cord and dorsal root ganglion
  JOURNAL   PLoS One 10 (3), e0121550 (2015)
   PUBMED   25826454
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC149055.6.
            
            On Dec 10, 2019 this sequence version replaced NM_001242647.1.
            
            Transcript Variant: This variant (2) uses an alternate 5' terminal
            exon, compared to variant 1. It encodes isoform 2, which is shorter
            and has a distinct N-terminus, compared to isoform 1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.127116.1,
                                           SRR5189679.140858.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849378, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-724               AC149055.6         85327-86050         c
            725-1471            AC149055.6         78231-78977         c
FEATURES             Location/Qualifiers
     source          1..1471
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 19.28 cM"
     gene            1..1471
                     /gene="Fam187b"
                     /gene_synonym="1700020B09Rik; Tmem162"
                     /note="family with sequence similarity 187, member B"
                     /db_xref="GeneID:76415"
                     /db_xref="MGI:MGI:1923665"
     exon            1..724
                     /gene="Fam187b"
                     /gene_synonym="1700020B09Rik; Tmem162"
                     /inference="alignment:Splign:2.1.0"
     CDS             9..1088
                     /gene="Fam187b"
                     /gene_synonym="1700020B09Rik; Tmem162"
                     /note="isoform 2 precursor is encoded by transcript
                     variant 2; transmembrane protein 162; protein FAM187B"
                     /codon_start=1
                     /product="protein FAM187B isoform 2 precursor"
                     /protein_id="NP_001229576.2"
                     /db_xref="GeneID:76415"
                     /db_xref="MGI:MGI:1923665"
                     /translation="MLTILWTLLSSALPVLGPHTPVSCPKAKECFLALLSSHDVLLEC
                     TISDTNWLFSRLSGGGKPVNLSSVSNIRKSPEGGLHIHNPLPSNTGLYQCLDKYGTQV
                     TSYKIDFQDITKLHATHTNLGQKPLMNETLNLSHREVVYTQWGPWQRCNNCGRQGERK
                     RLGYCYIKEPLEEPVPCGLYLWGANMFYARIRPEMQVEICFVGCQGHLTGGDYVIFDN
                     FKLTEESGSARLTCPFASIYRPVHWEADNSPLTWQDQLSGQTVSTIMDLHSGGQHLKV
                     FQPATYRCFVEQELIAQFNPTERQSKAQNPWQPRIQPDKADSVLRRLKLMVLSISVLA
                     VGGLLCKVVFRPVCGKKRSQVLLVK"
     exon            725..1471
                     /gene="Fam187b"
                     /gene_synonym="1700020B09Rik; Tmem162"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1084..1089
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fam187b"
                     /gene_synonym="1700020B09Rik; Tmem162"
                     /note="hexamer: AATAAA"
     polyA_site      1108
                     /gene="Fam187b"
                     /gene_synonym="1700020B09Rik; Tmem162"
                     /note="major polyA site"
     regulatory      1195..1200
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fam187b"
                     /gene_synonym="1700020B09Rik; Tmem162"
                     /note="hexamer: AACAAA"
     polyA_site      1218
                     /gene="Fam187b"
                     /gene_synonym="1700020B09Rik; Tmem162"
                     /note="major polyA site"
     regulatory      1453..1458
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fam187b"
                     /gene_synonym="1700020B09Rik; Tmem162"
                     /note="hexamer: AAGAAA"
     polyA_site      1471
                     /gene="Fam187b"
                     /gene_synonym="1700020B09Rik; Tmem162"
ORIGIN      
        1 agtccaccat gcttaccatc ctgtggacac tgctcagctc tgctctccca gtgttggggc
       61 cccacactcc cgtcagctgt cccaaggcca aggaatgttt cctggctctc ctctccagcc
      121 atgatgtgct cttggaatgc actatctccg atacaaactg gttattctct aggctcagtg
      181 gaggtggtaa gcccgtcaac ctatccagtg tttccaatat aagaaagagc ccagaaggtg
      241 gtctccatat ccacaaccca ttaccctcca acacgggcct ctaccaatgc ctggacaagt
      301 atggaaccca agtgaccagt tacaagattg atttccaaga tatcaccaag ctgcatgcca
      361 cgcatacaaa cctgggtcag aagcccctaa tgaatgagac actgaacctg agtcacagag
      421 aggtagtgta tacccaatgg ggaccttggc agagatgcaa taactgtggg agacagggag
      481 agcgcaaacg cctgggttac tgctacatca aggagccctt agaggagcct gtaccctgtg
      541 ggctctactt gtggggtgca aatatgtttt acgcccgaat aaggcctgag atgcaggtgg
      601 aaatctgctt tgtggggtgc caaggtcatc tgacgggtgg agactacgtc atcttcgata
      661 acttcaagct cacagaggag tccggatcag cacggcttac ctgtcccttc gcatccatct
      721 acaggcctgt ccactgggaa gctgacaaca gccctctgac atggcaggac cagctctctg
      781 gccagacggt cagcaccatc atggacctgc acagtggtgg ccagcacctg aaggtcttcc
      841 agcctgccac ttacagatgt tttgtggagc aggagctcat agcccagttc aaccccactg
      901 agagacaatc caaagcccag aacccttggc agcccagaat ccagccagac aaggcagact
      961 ccgttcttag gagattgaag ttgatggtgc tgagtatctc tgtactggcc gttggagggc
     1021 ttctctgtaa ggtggttttc cgtcctgtct gcggcaagaa gaggagtcag gtcctcctgg
     1081 tgaaataaac tgagccttct gtagccaaga ggacctggta tctctccact gtcccatcct
     1141 tagctctagc catccataag tggcaccaca tgagccactg gaggtgtgtg agccaacaaa
     1201 gacctggatt aagatctagt ggccacttca ctctttgttc tgtgccctgc tcggcttacc
     1261 tattgatcac ccccattgta cagataggaa aactgaggga agtctgtcta gtgattggag
     1321 atttggaatt ctcgggttcc ttagaaggag aaagggaagg agggaacctt ctcagggtgt
     1381 gtggtgtgac tttctctggg cagctgtgaa caaccatctg ttcttcccag atcagacact
     1441 aatgacagac taaagaaatg actacatgaa a
//
