LOCUS       NM_199200               3099 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus family with sequence similarity 171, member A2
            (Fam171a2), mRNA.
ACCESSION   NM_199200 XM_126738
VERSION     NM_199200.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3099)
  AUTHORS   Skarnes,W.C., Rosen,B., West,A.P., Koutsourakis,M., Bushell,W.,
            Iyer,V., Mujica,A.O., Thomas,M., Harrow,J., Cox,T., Jackson,D.,
            Severin,J., Biggs,P., Fu,J., Nefedov,M., de Jong,P.J., Stewart,A.F.
            and Bradley,A.
  TITLE     A conditional knockout resource for the genome-wide study of mouse
            gene function
  JOURNAL   Nature 474 (7351), 337-342 (2011)
   PUBMED   21677750
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ162493.1, CB182176.1, CB202938.1 and AL596258.15.
            
            On Jul 14, 2006 this sequence version replaced NM_199200.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.1357140.1,
                                           SRR7974084.738.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164138
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-457               CJ162493.1         3-459
            458-1130            CB182176.1         206-878
            1131-1279           CB202938.1         597-745
            1280-3099           AL596258.15        78826-80645         c
FEATURES             Location/Qualifiers
     source          1..3099
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 66.29 cM"
     gene            1..3099
                     /gene="Fam171a2"
                     /note="family with sequence similarity 171, member A2"
                     /db_xref="GeneID:217219"
                     /db_xref="MGI:MGI:2448496"
     exon            1..266
                     /gene="Fam171a2"
                     /inference="alignment:Splign:2.1.0"
     CDS             149..2617
                     /gene="Fam171a2"
                     /note="protein FAM171A2"
                     /codon_start=1
                     /product="protein FAM171A2 precursor"
                     /protein_id="NP_954670.2"
                     /db_xref="CCDS:CCDS36344.1"
                     /db_xref="GeneID:217219"
                     /db_xref="MGI:MGI:2448496"
                     /translation="MPPPSGPGVLARLLPLLGLLLGGASRAPGKSPPEPPSPQEILIK
                     VQVYVSGELVPLARASVDVFGNRTLLAAGTTDSEGVATLPLSYRLGTWVLVTAARPGF
                     LTNSVPWRVDKLPLYASVSLYLLPERPATLILYEDLVHILLGSPGARSQPWVQFQRRA
                     ARLPVSSTYSQLWASLTPASTQQEMRAFPAFLGTEASSSGNGSWLELIPLAAVSVHLL
                     TGNGTEVPLSGPIHLSLPVPSEPRALAVGTSIPAWRFDPKSGLWVRNGTGVIRKEGRQ
                     LYWTFVSPQLGYWVAAMASPTSGLVTITSGIQDIGTYHTIFLLTILAALALLVLILLC
                     LLIYYCRRRCLKPRQQHRKLQLSGPSDNKRDQATSMSQLHLICGGPLEPTSSGDPEAP
                     PPGSLHSAFSSSRDLASSRDDFFRAKPRSASRPAAEPPGARTVEGAGLKSARSVEGPG
                     GLEPSLDEYRRGPAGAAAFLHEPPSPPPSFDHYLGHKGAAESKTPDFLLSQSVDQLAR
                     PPSLSQPGQLIFCGSIDHLKDNVYRNVMPTLVIPAHYVRLGGEAGAAGVGDEATPPEG
                     SAAGPARPFPQPDPQRPLMQGHAGAGGDSGGGEGWGGGRSAPVSGSVTIPVLFNESTM
                     AQLNGELQALTEKKLLELGVKPHPRAWFVSLDGRSNSQVRHSYIDLQAGSGGRSTDAS
                     LDSGVDVHEARPARRRLPREERERAQLPAPPPPAPPRLALSEDTEPSSSESRTGLCSP
                     EDNSLTPLLDEVVAPEGRAATVPRGRGRSRGDSSRSSASELRRDSLTSPEDELGAEVG
                     DEAGDKKSPWQRREERPLMVFNVK"
     exon            267..494
                     /gene="Fam171a2"
                     /inference="alignment:Splign:2.1.0"
     exon            495..587
                     /gene="Fam171a2"
                     /inference="alignment:Splign:2.1.0"
     exon            588..746
                     /gene="Fam171a2"
                     /inference="alignment:Splign:2.1.0"
     exon            747..926
                     /gene="Fam171a2"
                     /inference="alignment:Splign:2.1.0"
     exon            927..1043
                     /gene="Fam171a2"
                     /inference="alignment:Splign:2.1.0"
     exon            1044..1170
                     /gene="Fam171a2"
                     /inference="alignment:Splign:2.1.0"
     exon            1171..3099
                     /gene="Fam171a2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3068..3073
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fam171a2"
                     /note="hexamer: AACAAA"
     regulatory      3077..3082
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fam171a2"
                     /note="hexamer: AATACA"
     polyA_site      3084
                     /gene="Fam171a2"
                     /note="major polyA site"
     polyA_site      3099
                     /gene="Fam171a2"
                     /note="major polyA site"
ORIGIN      
        1 agagacaatc gcgccgagcg ggcgccgcag ccggagcggg agcccaaccc ggagctgcac
       61 agagcggtgc agaactgggg ctgagcgggg ccggccgatc agggccgggc ggcaacgatg
      121 gaccgctagg gcccggccga gccccgcgat gccgccgccg agtggccccg gcgtcctcgc
      181 gcggctgctg ccgctgctgg ggctgctgct cggcggcgcc tcccgggctc ccggcaagtc
      241 tccgccggag ccccccagcc cgcaggagat cctgatcaag gtacaggtat atgtgagcgg
      301 ggagctggtg cccctggcca gggcctcagt agacgtcttt gggaaccgca ctcttctggc
      361 tgctggtact acggactcag agggcgtggc cacactaccc ctcagttacc gcctgggtac
      421 ctgggtcttg gtcactgctg cccgccccgg tttcctcacc aactcagtgc cctggcgtgt
      481 tgacaagctg ccgttgtacg catccgtcag cctctacctg ctcccagaga ggccagccac
      541 cctcatcctc tatgaggacc ttgtgcacat cctcctaggc tcgccaggtg cccgctccca
      601 gccctgggtg cagttccagc gtagagctgc ccgcctgcct gtcagttcca cctacagcca
      661 gctttgggct tcgctcacac cggccagcac ccagcaggaa atgcgggctt tccctgcctt
      721 cctggggacc gaggcctcca gctcaggcaa tggctcctgg ctggagctga taccactggc
      781 tgctgtgagc gtccacctgc taacaggcaa tgggacagag gtgcctctct caggccccat
      841 tcacctgtcc ctgccagtgc cctcagagcc tcgtgccctt gctgtgggca ccagcattcc
      901 agcctggagg tttgacccca agagtggact gtgggtacga aatggcactg gtgtgattcg
      961 gaaggaaggc cgacagctct actggacttt tgtctccccg cagctagggt actgggtagc
     1021 tgccatggcc tcccctacat ctgggctggt taccatcacc tcaggcattc aggacattgg
     1081 cacctaccac acaatcttcc tgctgacgat cctggctgcc ctggcgctgc tggtgctcat
     1141 tctgctgtgt ctactgatct actactgcag aagacgctgc ttgaagccta gacaacagca
     1201 ccgcaagctg cagctctccg gcccctcgga caacaaacga gatcaggcta cgtcgatgtc
     1261 tcaactccat ctcatctgcg ggggacccct ggagcctacg tcgtcgggag accccgaggc
     1321 ccctccccca ggctccctac actcggcctt ctccagctcc cgagacttag catcctcgcg
     1381 ggatgacttc ttccgtgcca aaccgcgctc cgccagccga ccggccgccg agcctcctgg
     1441 tgcccgcacc gttgagggtg ccgggctcaa gagcgcccgc tccgtcgagg gtcctggcgg
     1501 gctggagccc agcctggacg aataccggcg gggtccagcc ggggccgcgg ccttcctgca
     1561 tgagcctccc tcgccgccgc catccttcga ccattatctg ggccacaagg gggcggccga
     1621 gagcaagacc cccgactttc tgctgtcaca gtcggtagac cagctggcgc ggccgccgtc
     1681 cctcagccaa ccgggccagc tcattttctg cggttccatc gaccacctca aggacaacgt
     1741 gtaccgcaat gtcatgccca ccctggtgat ccccgcacac tatgtgcgcc tgggcggaga
     1801 ggcgggcgcc gcgggagtgg gcgacgaagc caccccgccg gagggctcgg ccgccggccc
     1861 cgcgcgcccc ttccctcaac ccgaccccca gcgccccctg atgcagggcc acgcgggtgc
     1921 gggaggcgac agcggtggcg gcgagggctg gggcggcggg cgctccgcac cggtcagcgg
     1981 ctcggtcacc attccggtgc tgttcaacga gtccaccatg gcgcagctca acggcgagct
     2041 gcaggctcta accgagaaga agctgctgga actgggagtg aagcctcacc cgcgcgcctg
     2101 gttcgtatcc ctggacggac gttccaattc acaagtgcgc cactcctaca tcgacctgca
     2161 ggcgggcagc ggcggccgca gcaccgatgc cagcctggac tcaggcgtcg acgtgcacga
     2221 ggctcgacct gcgcgccgcc ggctcccgag ggaagagcgg gagcgcgcgc agctgcccgc
     2281 gccgccgccg cccgcgcccc cgcgcctggc gctcagcgaa gacacagagc ccagcagcag
     2341 cgagagccgc accggcctct gctcgccgga ggacaactcg ctaacgcccc tgctggacga
     2401 ggtggtggca cccgaaggcc gggcagccac ggtacccagg ggtcggggcc gcagccgtgg
     2461 ggacagttcc cgcagcagcg ccagtgagct gcggcgcgat tcgctcacca gcccggagga
     2521 cgagctgggg gcggaggtgg gcgacgaggc tggcgacaag aagagcccgt ggcagcggcg
     2581 ggaggagcgg ccgctaatgg tgttcaacgt caagtagtgc ggcccggggg tcacccaccg
     2641 cccctgcagg ttcccagagt gcgcgccccg ggatgctatg gcggaggggc atgcgctctt
     2701 atcccggaga agagctcagg ggtcggcaga gctcatctgt ggtatgtgct gggggagtgt
     2761 cttgggaagg gaccctggat tggcctccaa acagagggag gtgggaggga cccggtcccc
     2821 catgggaggg gctggggaag agggctgggg tgggggagca gtgcctgtat aaacgtggct
     2881 gtacatagaa agatctattg tgggagagca ggaggggcga gccagcctca gctgctaggg
     2941 tgagggctgg gaagggaggg gcaatctctg tggacccttg ggaggggagg ggtgctgctt
     3001 ggatgtcaca gggctggtgg ctggggcgat cctggagact agaggataat gtgataacac
     3061 tcttgacaac aaaaaaaata caaagctggt gaggttaaa
//
