LOCUS       NM_001100458            4570 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus family with sequence similarity 169, member A
            (Fam169a), transcript variant 1, mRNA.
ACCESSION   NM_001100458 XM_913243
VERSION     NM_001100458.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4570)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
REFERENCE   2  (bases 1 to 4570)
  AUTHORS   Okazaki,N., F-Kikuno,R., Ohara,R., Inamoto,S., Koseki,H.,
            Hiraoka,S., Saga,Y., Seino,S., Nishimura,M., Kaisho,T., Hoshino,K.,
            Kitamura,H., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: IV. The complete nucleotide sequences of 500 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 11 (3), 205-218 (2004)
   PUBMED   15368895
REFERENCE   3  (bases 1 to 4570)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK173051.1, BG261627.1 and AW123559.1.
            
            On Mar 27, 2009 this sequence version replaced XM_913243.2.
            
            Transcript Variant: This variant (1) represents the longer
            transcript. Variants 1 and 2 encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK173051.1, SRR1660817.189691.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849384
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-812               AK173051.1         1-812
            813-1326            BG261627.1         65-578
            1327-4522           AK173051.1         1327-4522
            4523-4570           AW123559.1         1-48                c
FEATURES             Location/Qualifiers
     source          1..4570
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 50.66 cM"
     gene            1..4570
                     /gene="Fam169a"
                     /gene_synonym="B230112C05Rik; SLAP75"
                     /note="family with sequence similarity 169, member A"
                     /db_xref="GeneID:320557"
                     /db_xref="MGI:MGI:2444268"
     exon            1..69
                     /gene="Fam169a"
                     /gene_synonym="B230112C05Rik; SLAP75"
                     /inference="alignment:Splign:2.1.0"
     exon            70..204
                     /gene="Fam169a"
                     /gene_synonym="B230112C05Rik; SLAP75"
                     /inference="alignment:Splign:2.1.0"
     exon            205..304
                     /gene="Fam169a"
                     /gene_synonym="B230112C05Rik; SLAP75"
                     /inference="alignment:Splign:2.1.0"
     exon            305..390
                     /gene="Fam169a"
                     /gene_synonym="B230112C05Rik; SLAP75"
                     /inference="alignment:Splign:2.1.0"
     exon            391..562
                     /gene="Fam169a"
                     /gene_synonym="B230112C05Rik; SLAP75"
                     /inference="alignment:Splign:2.1.0"
     exon            563..742
                     /gene="Fam169a"
                     /gene_synonym="B230112C05Rik; SLAP75"
                     /inference="alignment:Splign:2.1.0"
     exon            743..871
                     /gene="Fam169a"
                     /gene_synonym="B230112C05Rik; SLAP75"
                     /inference="alignment:Splign:2.1.0"
     exon            872..978
                     /gene="Fam169a"
                     /gene_synonym="B230112C05Rik; SLAP75"
                     /inference="alignment:Splign:2.1.0"
     exon            979..1018
                     /gene="Fam169a"
                     /gene_synonym="B230112C05Rik; SLAP75"
                     /inference="alignment:Splign:2.1.0"
     exon            1019..1169
                     /gene="Fam169a"
                     /gene_synonym="B230112C05Rik; SLAP75"
                     /inference="alignment:Splign:2.1.0"
     exon            1170..1326
                     /gene="Fam169a"
                     /gene_synonym="B230112C05Rik; SLAP75"
                     /inference="alignment:Splign:2.1.0"
     exon            1327..1527
                     /gene="Fam169a"
                     /gene_synonym="B230112C05Rik; SLAP75"
                     /inference="alignment:Splign:2.1.0"
     exon            1528..4554
                     /gene="Fam169a"
                     /gene_synonym="B230112C05Rik; SLAP75"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2138..2143
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fam169a"
                     /gene_synonym="B230112C05Rik; SLAP75"
                     /note="hexamer: AATAAA"
     polyA_site      2171
                     /gene="Fam169a"
                     /gene_synonym="B230112C05Rik; SLAP75"
                     /note="major polyA site"
     regulatory      3038..3043
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fam169a"
                     /gene_synonym="B230112C05Rik; SLAP75"
                     /note="hexamer: AATAAA"
     polyA_site      3061
                     /gene="Fam169a"
                     /gene_synonym="B230112C05Rik; SLAP75"
     regulatory      3199..3204
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fam169a"
                     /gene_synonym="B230112C05Rik; SLAP75"
                     /note="hexamer: ATTAAA"
     polyA_site      3218
                     /gene="Fam169a"
                     /gene_synonym="B230112C05Rik; SLAP75"
     regulatory      4523..4528
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fam169a"
                     /gene_synonym="B230112C05Rik; SLAP75"
                     /note="hexamer: AATAAA"
     polyA_site      4549
                     /gene="Fam169a"
                     /gene_synonym="B230112C05Rik; SLAP75"
ORIGIN      
        1 acggcggcgg cggggagcgg ccgctcggtc attcgcgctc cgccttcggg cccccgcggc
       61 gcggctgaga gaatggcatt ccctgtggat ttgctggata actgcacgca tgaggaattg
      121 gaaaactctt ctgaggatta cctctccagc ctaaggtgtg gggaccctga acatccagag
      181 tgcttttcta gtctcaacat tacgattccc gttagtctgt caaatgtggg ctttgtccct
      241 ctctatggcg gcaatcagac acagaaaatt cttgctctct ttgcgcctga agattctctt
      301 acagctgtgg cactttacct tgttggtcag tggtgggcca ttgatgatat tgtgaaaacc
      361 tctgaacctt ctagagaggg gctgaagcag gtgagcactc ttggagagag agtggttctg
      421 tatgttctca atcggattat ttatagaaag caggaaatgg agagaaatga gatcccattc
      481 ttgtgccata gcagtactga ctatgctaag attctgtgga agaaaggaga ggccgttggg
      541 ttttattcag ttaagcctac aggaagctta tgtgcctcat ttcttactca gaattaccaa
      601 ctgccagttc ttgatacaat gtttataagg aagaaataca gaggaaaaga tttggggctt
      661 catatgctgg aagattttgt tgattccttt acagaagatg cacttggctt acggtaccca
      721 ctgtcttctc tcatgtacac agcttccaag caatactttg aaaagtatcc aggagatcat
      781 gaacttcttt gggaagttga aggtgtgggt cattggcatc agcgagtacc agtcacccga
      841 gcattgcaga gagaggctat taaagctaca gatgtttctc aatatgaagc cacaagacct
      901 gtgtctggag aatatggtct tgctgctgta ccagaacatg aacctggact ggacgacact
      961 cagtctagtg agctgcagat ccattcccta aaagatgcct ttgctagcac ttctgaaggt
     1021 ccagaaaaga ctcctgtttc cacgcgtact cggagcagcc atctaaagcg gccaaagatt
     1081 gggaagcatt ttcaggattc tgagtttagt agttctcaag gtgaagatga aaacgttgcc
     1141 aagacttcac ctacggcttc agtaaacaaa atagagtatg ctgcacgaac atcagagagc
     1201 tcagaagaat tccttgaaga agagcctgag cagggagtga ttgactttga ggatgaaagc
     1261 ggtgataaag atgcacagcc tgctctggaa actcagccac gcctgcagaa acaagatggg
     1321 gacaaggact ctgcgttaga gcctgtgaat ggggaggtaa tggatgctgc cctcaagccc
     1381 tctcttacaa ctgaagacga ggactccacc agtgagggtc ttgaagaaga cttaaaggtt
     1441 ccacctttta attccagcgg agaacctgga aatcctgttc cactagtagc agagtcttca
     1501 aaagtgcccg aggccacatt agctaagacc tcacctgata ctgactcaga aatgttgatc
     1561 gatcaaagcc catctgatga taaaggacat actgaagaaa atctgtcccc agtttcaaaa
     1621 aagaaaacac ttttggggag ctcagacaat gttgccactg tatcaaatat agaaaagtct
     1681 gatggtaatt ttcccaattc tgtggtacca gaatttcccg aagaaccagt ctctcagaat
     1741 ttatcaccca acactacttc ctcagtggaa gaccagggtg aggagggagc acctgaggcc
     1801 caggaaccat cggctactca gagttctctg atagaggtag aacttgaaga cgcgccattt
     1861 ccacagaatg caggacagaa gagccagtca gaggaacagt ctgaagcgtc ctctgagcac
     1921 ctggaacagt ttacacagtc agcagagaaa gctgtggata gcagctcaga ggagattgaa
     1981 gtggaagttc ctgtagtaga caggcgcaat ctgagaagaa aggccaaagg gcataagggc
     2041 cctggcaaga agaaagccaa gctgacctga atgaaggagc aatgcagttc acacatcctc
     2101 cttgttgtta ttgttgttgt tttaaactgc agtaattaat aaacagcatg gggcacagga
     2161 cagattctaa accttccact ggaacttatt tacacatgca ggttttctct ttcctttaga
     2221 acaaggattc gctgttcttt ttcatttttc aggctatttt ctctaagtaa ctttcgttta
     2281 tgaaccatgt gtcaattttg gaattccagg tcatattctt cttcagcagg tggagcatct
     2341 aatcattaat attttaaaaa tacaacttaa aaagaactat tagactttga tcataggaat
     2401 cttttatact aagggtttta atggtaaaat ttggtaagga ttctcaaagt tttatcttag
     2461 tatcaaaaca atctccatct tttaggtgta agcataccta aacaaaagga gtcagttaat
     2521 taaatatagt atcaagttag agaacaaaaa atagaaattt atgatcagtg gtttatgaag
     2581 atggtttttg tttttatttc ttaatgttag ttgtagatgg agttcaagtc tgtgagaagt
     2641 actttaggct gcatatctgg tgttagtact gttaaagata taactgtggt gtgtgggtac
     2701 ataatttaaa ttttaaattt aatacttcca catgaagtat tagtttgcta taattttttt
     2761 ctctatatat tttcagatgc tgaaaacctt gagtacactt ttatctttta aacacctcaa
     2821 gtaattgaag ttaatatata gttgaatttg gactgtcgtc ctgatcacag atagtgcaga
     2881 agtgtaggcc cctccccaag cctccttaat tcttcactgc tgtctcactg tgactcttct
     2941 atcaacagac ctccacccag cttgcctgtt atgccctgta tccatatttg gataggtcta
     3001 gaactcaatc caaacacctt tagtcctaga tggaaggaat aaagctgccc agtgagatgt
     3061 acaaatgcct agattctgac tctgcggtcc ctttgggtct tgtatacttt aagacagggt
     3121 ttctctgtgt agcattgact atcctgtaaa ccaggcagac ctccagctca gatctgcctc
     3181 ttcctgctga gtgttgagat taaagacatg cagcactacc acctggctat ttgatatttt
     3241 agaaatattt aaaaaaaatg acaattggtt tttaaatggt tattagaatt catagaaaat
     3301 tggtcagtgg cacttgggga ataccacata ctttgatttg tatttcagtt agagactatt
     3361 ttgagaccaa ttagaattgt ttttgaaaca gcttgaacct tgtgagagaa atgttgagaa
     3421 attgagtcat gaagtacttg tgagtttatg ctcagtcatt tcagtctttg gtcagctgat
     3481 tggtgatttc atgtcttaca ttttaattta gggatgttgg tattttagaa aagtctgatt
     3541 aattagttaa gaccttaaag cagcaaacca aatagcaaac ccttgaagtt agaacacttg
     3601 cacttacctg ttgttttaat tttggctaga tgttagataa tttcattcta agtgaaaatt
     3661 atactttgac catttttttt tttttttttg gtaaaagctg ttataaaata gatttgacta
     3721 attagtaaat ttgccaaatg ctgatgctgt tttacacgtt tagagaaatt tgttaatatc
     3781 tcaaccaggg atagcatttg aaaggcatgt taagattcag aaattgattt ttaacacaca
     3841 tttaaagttt tctggatatg ttgttttggt attttgtttt ggctcctgtt ccccttccat
     3901 tactttttta aatgagtgtt ttagtagatt gcactcactg gcagctcaat gtatgaatag
     3961 tctctagagt taaagaaaaa ttttcacata ccacactggg tactagcagt ataaacttat
     4021 atacttccta aacttgtttg ataaagatgg gattcaaaca ttttgctctg catacaagaa
     4081 aacttgttac cttgttgtct gtgacagaag ttaaagtttg tatagatcat agaggaaaag
     4141 ttaggtcaca ggaaaaaatc tttcatattc agtaacatgt ttatataaaa tttgtaataa
     4201 tttatgttca gtagggaatc taaacaaatg tagcaaggca tgaggactgc agagatttca
     4261 agcagctgtt tgagtgctct gtcccgttgt gtagtctcct gtgaactggt actttctgtt
     4321 tcggagtcat gaatgtggag aaggaagctc ccttctggtg tatatacata tatatttcct
     4381 tatgtaacat agcagaagtg tactaccaga agtttagttc tactttcaaa cttaaactgt
     4441 tagaccacac aaaaatttat ttaagaattt tattgtaaag ctcctttaaa acttttaaag
     4501 agattctatt atgatttttt aaaataaaat caaatggcat gacttagaat gtcaaaaaaa
     4561 aaaaaaaaaa
//
