LOCUS       NM_027342                681 bp    mRNA    linear   ROD 07-MAY-2024
DEFINITION  Mus musculus family with sequence similarity 162, member A
            (Fam162a), mRNA.
ACCESSION   NM_027342
VERSION     NM_027342.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 681)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 681)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 681)
  AUTHORS   Cho,Y.E., Ko,J.H., Kim,Y.J., Yim,J.H., Kim,S.M. and Park,J.H.
  TITLE     mHGTD-P mediates hypoxic neuronal cell death via the release of
            apoptosis-inducing factor
  JOURNAL   Neurosci Lett 416 (2), 144-149 (2007)
   PUBMED   17316997
REFERENCE   4  (bases 1 to 681)
  AUTHORS   Lee,M.J., Kim,J.Y., Suk,K. and Park,J.H.
  TITLE     Identification of the hypoxia-inducible factor 1 alpha-responsive
            HGTD-P gene as a mediator in the mitochondrial apoptotic pathway
  JOURNAL   Mol Cell Biol 24 (9), 3918-3927 (2004)
   PUBMED   15082785
REFERENCE   5  (bases 1 to 681)
  AUTHORS   Vidal,F., Mougneau,E., Glaichenhaus,N., Vaigot,P., Darmon,M. and
            Cuzin,F.
  TITLE     Coordinated posttranscriptional control of gene expression by
            modular elements including Alu-like repetitive sequences
  JOURNAL   Proc Natl Acad Sci U S A 90 (1), 208-212 (1993)
   PUBMED   8419925
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CT573031.6.
            
            On Jan 22, 2019 this sequence version replaced NM_027342.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK009946.1, BC010826.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849389, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-92                CT573031.6         63299-63390         c
            93-215              CT573031.6         44115-44237         c
            216-324             CT573031.6         41671-41779         c
            325-433             CT573031.6         38208-38316         c
            434-681             CT573031.6         35673-35920         c
FEATURES             Location/Qualifiers
     source          1..681
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 25.43 cM"
     gene            1..681
                     /gene="Fam162a"
                     /gene_synonym="2310056P07Rik; HGTD-P"
                     /note="family with sequence similarity 162, member A"
                     /db_xref="GeneID:70186"
                     /db_xref="MGI:MGI:1917436"
     exon            1..92
                     /gene="Fam162a"
                     /gene_synonym="2310056P07Rik; HGTD-P"
                     /inference="alignment:Splign:2.1.0"
     CDS             59..526
                     /gene="Fam162a"
                     /gene_synonym="2310056P07Rik; HGTD-P"
                     /note="E2-induced gene 5 protein homolog; growth and
                     transformation-dependent protein"
                     /codon_start=1
                     /product="protein FAM162A"
                     /protein_id="NP_081618.1"
                     /db_xref="CCDS:CCDS28146.1"
                     /db_xref="GeneID:70186"
                     /db_xref="MGI:MGI:1917436"
                     /translation="MWSLGGLRLAAGHCLRLYERNASSSLRFTRNTDLKRINGFCTKP
                     QESPKTPTQSYRHGVPLHKPTDFEKKILLWSGRFKKEEEIPETISFEMLDAAKNKLRV
                     KVSYLMIALTVAGCIYMVIEGKKAAKRHESLTSLNLERKARLREEAAMKAKTD"
     exon            93..215
                     /gene="Fam162a"
                     /gene_synonym="2310056P07Rik; HGTD-P"
                     /inference="alignment:Splign:2.1.0"
     exon            216..324
                     /gene="Fam162a"
                     /gene_synonym="2310056P07Rik; HGTD-P"
                     /inference="alignment:Splign:2.1.0"
     exon            325..433
                     /gene="Fam162a"
                     /gene_synonym="2310056P07Rik; HGTD-P"
                     /inference="alignment:Splign:2.1.0"
     exon            434..681
                     /gene="Fam162a"
                     /gene_synonym="2310056P07Rik; HGTD-P"
                     /inference="alignment:Splign:2.1.0"
     regulatory      661..666
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fam162a"
                     /gene_synonym="2310056P07Rik; HGTD-P"
                     /note="hexamer: AATACA"
     polyA_site      679
                     /gene="Fam162a"
                     /gene_synonym="2310056P07Rik; HGTD-P"
                     /note="major polyA site"
ORIGIN      
        1 attgagcgcc agcgccgcgg ccgccgtggg gtgctgtgcg tcggcggagc gggtggccat
       61 gtggagcctc ggcggcctgc gcctggcggc tggacattgt cttaggttat atgaaagaaa
      121 tgcttcctcg tctctaaggt ttaccagaaa cactgacttg aagaggatca atggattctg
      181 caccaagcca caggaaagtc ccaaaactcc aacccagtct tacagacacg gggtgccgct
      241 gcacaagccc acagattttg agaagaagat cctgctgtgg tcaggccgct tcaagaagga
      301 ggaagagatc ccagagacaa tctcatttga gatgcttgat gctgcgaaga acaagctccg
      361 ggtgaaggtc agctatctaa tgattgccct gaccgtggca ggatgcatct atatggttat
      421 tgagggcaag aaggctgcga aaagacatga gtctttaaca agcttgaacc tggaaaggaa
      481 agcccgtctg agagaggagg cagctatgaa ggccaaaaca gactagaagt atttggaaaa
      541 cccaggagta aggctgcaac aagaaacctg ctttacaaag gatacaatct gagactcact
      601 ttgcagacat gtattttgca cagatgtatt ccacttccct attaatgctg tagaggaaca
      661 aatacatttt cttaaagaat g
//
