LOCUS       NM_024244               3305 bp    mRNA    linear   ROD 12-JUN-2024
DEFINITION  Mus musculus family with sequence similarity 13, member C (Fam13c),
            transcript variant 1, mRNA.
ACCESSION   NM_024244
VERSION     NM_024244.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3305)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC079681.38 and AC122896.4.
            
            On Jan 10, 2022 this sequence version replaced NM_024244.4.
            
            Transcript Variant: This variant (1) encodes the longest isoform
            (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK004797.1, BC129840.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849382, SAMN00849384
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-192               AC079681.38        80380-80571         c
            193-249             AC079681.38        72641-72697         c
            250-451             AC079681.38        70227-70428         c
            452-570             AC079681.38        44183-44301         c
            571-634             AC079681.38        22506-22569         c
            635-782             AC079681.38        530-677             c
            783-993             AC122896.4         70420-70630
            994-1132            AC122896.4         72102-72240
            1133-1214           AC122896.4         78380-78461
            1215-1417           AC122896.4         80064-80266
            1418-1513           AC122896.4         87431-87526
            1514-1710           AC122896.4         88765-88961
            1711-1812           AC122896.4         90224-90325
            1813-3305           AC122896.4         92976-94468
FEATURES             Location/Qualifiers
     source          1..3305
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 36.68 cM"
     gene            1..3305
                     /gene="Fam13c"
                     /gene_synonym="1200015N20Rik; C030038O19Rik; mKIAA1796"
                     /note="family with sequence similarity 13, member C"
                     /db_xref="GeneID:71721"
                     /db_xref="MGI:MGI:1918971"
     exon            1..192
                     /gene="Fam13c"
                     /gene_synonym="1200015N20Rik; C030038O19Rik; mKIAA1796"
                     /inference="alignment:Splign:2.1.0"
     CDS             131..1936
                     /gene="Fam13c"
                     /gene_synonym="1200015N20Rik; C030038O19Rik; mKIAA1796"
                     /note="isoform 1 is encoded by transcript variant 1;
                     protein FAM13C"
                     /codon_start=1
                     /product="protein FAM13C isoform 1"
                     /protein_id="NP_077206.3"
                     /db_xref="CCDS:CCDS35932.1"
                     /db_xref="GeneID:71721"
                     /db_xref="MGI:MGI:1918971"
                     /translation="MFSCFCFSLQDNSFGSAAVTECDEDTVSVHEDEDDCSGLRDEDN
                     KENYPQVAARLDELALPSHEAQQHVEQTLPVDGVLRTSMGNFKSRKPKSILRAESGRN
                     HGESQETEHVVPSQSECQGRAGTPAHESPQSSIFRCQETVRLQPRIDQRATIWPKDAF
                     GTQQDLHENSLLKLQALESGLCSAFLTTQEEDGQVHGVKDPAPASTQSAPADSADPAD
                     PMPAHKDAPGDADGTSEDLQSAGTSRLLYHITDGDNPLLSPRCSIFSQSQRFNLDPES
                     APSPPSSQQFMMPRSSSRCGSGDGKEPQTITQLTKHIQSLKRKIRKFEEKFEQEKKYR
                     PSHGDKTSNPEVLKWMNDLAKGRKQLKELKLKLSEEQGSTPKGPRRNLSCEQPPVPRE
                     NGKSEAVGPEPGSSGEETSDAVVPEKREQTPPQDDGKGTKQDKNLIKPLYDRCRGIKQ
                     ILPTPSLIPTIQEEEDSDEDCPQGSQQPSLPDPVSRLPVGDHLIYSETEPVRTLLPDE
                     KKEGKQPALSMSNLHEATMPVLLDHLRETRADKKRLRKALREFEEQFFKQTGRSPQKE
                     DRMPMADEYCEYKHIKAKLRLLEVLISKQDVAKTI"
     exon            193..249
                     /gene="Fam13c"
                     /gene_synonym="1200015N20Rik; C030038O19Rik; mKIAA1796"
                     /inference="alignment:Splign:2.1.0"
     exon            250..451
                     /gene="Fam13c"
                     /gene_synonym="1200015N20Rik; C030038O19Rik; mKIAA1796"
                     /inference="alignment:Splign:2.1.0"
     exon            452..570
                     /gene="Fam13c"
                     /gene_synonym="1200015N20Rik; C030038O19Rik; mKIAA1796"
                     /inference="alignment:Splign:2.1.0"
     exon            571..634
                     /gene="Fam13c"
                     /gene_synonym="1200015N20Rik; C030038O19Rik; mKIAA1796"
                     /inference="alignment:Splign:2.1.0"
     exon            635..782
                     /gene="Fam13c"
                     /gene_synonym="1200015N20Rik; C030038O19Rik; mKIAA1796"
                     /inference="alignment:Splign:2.1.0"
     exon            783..993
                     /gene="Fam13c"
                     /gene_synonym="1200015N20Rik; C030038O19Rik; mKIAA1796"
                     /inference="alignment:Splign:2.1.0"
     exon            994..1132
                     /gene="Fam13c"
                     /gene_synonym="1200015N20Rik; C030038O19Rik; mKIAA1796"
                     /inference="alignment:Splign:2.1.0"
     exon            1133..1214
                     /gene="Fam13c"
                     /gene_synonym="1200015N20Rik; C030038O19Rik; mKIAA1796"
                     /inference="alignment:Splign:2.1.0"
     exon            1215..1417
                     /gene="Fam13c"
                     /gene_synonym="1200015N20Rik; C030038O19Rik; mKIAA1796"
                     /inference="alignment:Splign:2.1.0"
     exon            1418..1513
                     /gene="Fam13c"
                     /gene_synonym="1200015N20Rik; C030038O19Rik; mKIAA1796"
                     /inference="alignment:Splign:2.1.0"
     exon            1514..1710
                     /gene="Fam13c"
                     /gene_synonym="1200015N20Rik; C030038O19Rik; mKIAA1796"
                     /inference="alignment:Splign:2.1.0"
     exon            1711..1812
                     /gene="Fam13c"
                     /gene_synonym="1200015N20Rik; C030038O19Rik; mKIAA1796"
                     /inference="alignment:Splign:2.1.0"
     exon            1813..3305
                     /gene="Fam13c"
                     /gene_synonym="1200015N20Rik; C030038O19Rik; mKIAA1796"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3284..3289
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fam13c"
                     /gene_synonym="1200015N20Rik; C030038O19Rik; mKIAA1796"
                     /note="hexamer: AATAAA"
     polyA_site      3305
                     /gene="Fam13c"
                     /gene_synonym="1200015N20Rik; C030038O19Rik; mKIAA1796"
                     /note="major polyA site"
ORIGIN      
        1 agacagcagc ccaaggtaga gcgagcgtgc cgggcgagcc ctaagacttg cctggcaatg
       61 ccatgtttgt gtgggtgctc taactccggg agagcaatta gggagacggc tccccggccg
      121 cacttggctc atgttttctt gtttctgttt cagccttcag gataattcct tcggcagcgc
      181 cgctgtaact gagtgtgacg aagatacagt ctctgtacat gaagacgaag acgactgctc
      241 tgggctcaga gatgaagaca ataaagagaa ttacccccag gtggcagctc gcttagatga
      301 gctcgccctg ccctcccacg aggctcagca gcatgtagaa cagaccctgc ctgtggatgg
      361 agtgctgaga accagtatgg gcaacttcaa gtcccgaaag cccaaatcca tcctcagagc
      421 cgagagtggt cggaaccacg gagaaagcca ggagacagag catgtggtac ccagccagtc
      481 agagtgccag ggcagagcag gaacaccggc tcatgagagt ccacaaagca gcatcttcag
      541 gtgccaggaa acggtgcgac ttcaaccaag aatagaccag agggctacca tttggccaaa
      601 ggatgctttt ggaactcagc aggacttaca tgagaattcc ttgctgaagc tccaagccct
      661 cgagtctggt ctgtgctccg cgtttctgac gacccaggaa gaagatggcc aggtgcacgg
      721 agttaaggac ccggccccag cttccacgca gagtgcgcct gccgacagcg cagatcctgc
      781 agatcccatg ccagctcata aggatgcacc gggtgacgcc gacggtacct cagaagacct
      841 ccagtctgca gggaccagca ggctactcta tcacatcacc gatggtgaca atccgttgct
      901 gtcaccacgg tgctccatct ttagccaaag tcagaggttc aacttggacc ctgagtccgc
      961 tccatctcca cccagcagcc agcagttcat gatgccacga agctcttccc gatgtggcag
     1021 tggggacggc aaggagccgc agaccattac acagctcacc aagcacatcc aaagcctcaa
     1081 gaggaagatt cgcaagtttg aagaaaaatt tgaacaagaa aagaaatacc gcccgtcgca
     1141 tggggacaag acttcaaatc ccgaagttct gaaatggatg aacgatttgg ccaaggggcg
     1201 caaacagctc aaagaactaa agctgaagct gtcggaagag caagggagta cgcccaaggg
     1261 ccctcggaga aacctgtcct gtgaacagcc tccagtcccc agagaaaatg gcaagtcgga
     1321 agccgtgggc cccgaaccag gctcctctgg cgaggagact tcagatgctg tggtgccgga
     1381 gaagagagaa cagacccctc cccaggacga tgggaaggga actaagcaag acaagaacct
     1441 cataaagcct ctttatgacc gatgcagagg tatcaagcaa atcttgccga caccatccct
     1501 tatcccaaca attcaggagg aagaggactc tgatgaagac tgtccacagg gaagtcagca
     1561 accctcttta ccagatccag tgtcccgcct acctgtcggt gatcacctca tctactcgga
     1621 gacagagcct gtgaggaccc tgctaccaga tgaaaagaaa gaagggaagc agccagctct
     1681 ctccatgtcc aacttacacg aggccaccat gcccgtcctc ctcgaccatc tccgagaaac
     1741 tagggctgac aagaagaggc tacggaaagc cctgcgagaa tttgaagaac aattttttaa
     1801 acagacggga agaagccccc agaaggaaga caggatgccg atggcagatg agtactgtga
     1861 atacaagcac ataaaagcca agctgagact actggaggtc ctcatcagca agcaggatgt
     1921 ggccaaaact atttgaggtt cagctctgct cacttccctc tcaagatgaa gtcaagttca
     1981 ttttgctcta ctgttcttgc tacgtagttt tgatgtactg aaaacggaag cactttagag
     2041 atagtattag ctgttttgac aaaggaaaag ctagtataat tatacccaac caaggcattt
     2101 aaatagggaa ataacaggta atgttgggat tggcaaaaag catttagcct ccatgccaaa
     2161 ctgaaatcca gagtcaaatg taagtgtctc aaaaactgtc taatatcttg tcaaacctaa
     2221 aatcacacgt aggcaggcta cctgctagcg aagatttagt agtggcccca aattgatttt
     2281 attgatgtat ggaaagagca tggtttaaat acattggtga gacaaagaaa atttctgctc
     2341 ttcacccagg gaggaaaaca gctagaagga aggtaattta agcgagacaa catccactac
     2401 cttgtcctgt aagcctgtag gcgttcagca ctctaaaata actcgactgt gtcactgcta
     2461 atctcttatt tctatatgaa agtagtgcat tattttatct gttatttgaa aatttacatt
     2521 tccagttacc aaagttcact tggatggcat gtactttgtg aattatcttt gtctatgact
     2581 gacaaatgtt tatattaaag taaaatatta aaataggtat tttggataga tgtgtctgca
     2641 gtaataacct aatgtgacca tagtactatt gctgattttc ttgtttccta tactaagatt
     2701 atataactat ttttccattg ggaatatgca tctttcttaa tgttccaagg tctgtacttt
     2761 ataaagtgaa ataactttct tgtgagctgc attcattctg cacagggtga aaagcttgga
     2821 aatcaccaag agacctttta tttgctttat ttagtgtatc ttgctttttc tccactcaca
     2881 cacttactgg tttggttttt gtaaaatcaa gtaacaggta gacattttct cattatcaac
     2941 attgttccta tttctgtttt ctgtcatgtt taagcatggt gttgaagaaa ctcagatttt
     3001 cctattgctt gggcggaaaa aaaaacccaa cccagattct agacacagac tatgtcagag
     3061 gcgtgttgtt ctctctgtat tcacctgctg tttatgaatc agagtaatgg ccttcataaa
     3121 tttgtttaat cgaagtcatc tacttgtaac aggacagata cacaactatt tgaggtttac
     3181 aaattacatc tttgataagg gaaatggttt cgtgagatgt atacaattgc tattaaaatg
     3241 taactatatt ctatatgatt gtaaatattt tatacaacgt acaaataaaa tatttttcta
     3301 ttata
//
