LOCUS       NM_001403087            6270 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus family with sequence similarity 135, member A
            (Fam135a), transcript variant 1, mRNA.
ACCESSION   NM_001403087 XM_006496229
VERSION     NM_001403087.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 6270)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 6270)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
REFERENCE   3  (bases 1 to 6270)
  AUTHORS   Okazaki,N., F-Kikuno,R., Ohara,R., Inamoto,S., Koseki,H.,
            Hiraoka,S., Saga,Y., Seino,S., Nishimura,M., Kaisho,T., Hoshino,K.,
            Kitamura,H., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: IV. The complete nucleotide sequences of 500 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 11 (3), 205-218 (2004)
   PUBMED   15368895
REFERENCE   4  (bases 1 to 6270)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   5  (bases 1 to 6270)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC129325.4 and AC123790.4.
            
            On Mar 27, 2022 this sequence version replaced XM_006496229.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR10223969.103.1,
                                           SRR9219380.43931.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-199               AC129325.4         57225-57423         c
            200-279             AC123790.4         7168-7247
            280-419             AC123790.4         17641-17780
            420-490             AC123790.4         17872-17942
            491-664             AC123790.4         19229-19402
            665-791             AC123790.4         21016-21142
            792-945             AC123790.4         21810-21963
            946-1023            AC123790.4         25939-26016
            1024-1073           AC123790.4         28739-28788
            1074-1229           AC123790.4         30877-31032
            1230-1303           AC123790.4         42410-42483
            1304-1458           AC123790.4         44250-44404
            1459-3787           AC123790.4         44618-46946
            3788-3948           AC123790.4         48378-48538
            3949-4040           AC123790.4         50273-50364
            4041-4138           AC123790.4         50836-50933
            4139-4290           AC123790.4         53141-53292
            4291-4401           AC123790.4         54361-54471
            4402-4515           AC123790.4         60254-60367
            4516-6270           AC123790.4         62649-64403
FEATURES             Location/Qualifiers
     source          1..6270
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 9.87 cM"
     gene            1..6270
                     /gene="Fam135a"
                     /gene_synonym="4921533L14Rik"
                     /note="family with sequence similarity 135, member A"
                     /db_xref="GeneID:68187"
                     /db_xref="MGI:MGI:1915437"
     exon            1..199
                     /gene="Fam135a"
                     /gene_synonym="4921533L14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            200..279
                     /gene="Fam135a"
                     /gene_synonym="4921533L14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            280..419
                     /gene="Fam135a"
                     /gene_synonym="4921533L14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            420..490
                     /gene="Fam135a"
                     /gene_synonym="4921533L14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            491..664
                     /gene="Fam135a"
                     /gene_synonym="4921533L14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            665..791
                     /gene="Fam135a"
                     /gene_synonym="4921533L14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            792..945
                     /gene="Fam135a"
                     /gene_synonym="4921533L14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            946..1023
                     /gene="Fam135a"
                     /gene_synonym="4921533L14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1024..1073
                     /gene="Fam135a"
                     /gene_synonym="4921533L14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1074..1229
                     /gene="Fam135a"
                     /gene_synonym="4921533L14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1230..1303
                     /gene="Fam135a"
                     /gene_synonym="4921533L14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1304..1458
                     /gene="Fam135a"
                     /gene_synonym="4921533L14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1459..3787
                     /gene="Fam135a"
                     /gene_synonym="4921533L14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3788..3948
                     /gene="Fam135a"
                     /gene_synonym="4921533L14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3949..4040
                     /gene="Fam135a"
                     /gene_synonym="4921533L14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            4041..4138
                     /gene="Fam135a"
                     /gene_synonym="4921533L14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            4139..4290
                     /gene="Fam135a"
                     /gene_synonym="4921533L14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            4291..4401
                     /gene="Fam135a"
                     /gene_synonym="4921533L14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            4402..4515
                     /gene="Fam135a"
                     /gene_synonym="4921533L14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            4516..6270
                     /gene="Fam135a"
                     /gene_synonym="4921533L14Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      5308..5313
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fam135a"
                     /gene_synonym="4921533L14Rik"
                     /note="hexamer: AATATA"
     polyA_site      5332
                     /gene="Fam135a"
                     /gene_synonym="4921533L14Rik"
                     /note="major polyA site"
     regulatory      5388..5393
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fam135a"
                     /gene_synonym="4921533L14Rik"
                     /note="hexamer: TATAAA"
     polyA_site      5406
                     /gene="Fam135a"
                     /gene_synonym="4921533L14Rik"
                     /note="major polyA site"
     regulatory      5885..5890
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fam135a"
                     /gene_synonym="4921533L14Rik"
                     /note="hexamer: AATAAA"
     polyA_site      5923
                     /gene="Fam135a"
                     /gene_synonym="4921533L14Rik"
     regulatory      6238..6243
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fam135a"
                     /gene_synonym="4921533L14Rik"
                     /note="hexamer: AATAAA"
     polyA_site      6270
                     /gene="Fam135a"
                     /gene_synonym="4921533L14Rik"
ORIGIN      
        1 atgctcgccg gcggctctgg gccgggagcc gagcgccgga gacgagccgg ctcttggctt
       61 tgcggtggtt gcgggtgctg cgatggcgat gtgagcgggc ccggggcggg atggtgcgga
      121 cctggctaag gacgcctacc agccggacgc agagctcctc cgtcgcacag gcgccagccg
      181 aggccgtgcc ggttgagagt ttttaccaaa tacgcgcatc gatgaaaata ccagcaagaa
      241 ttccccaccg agtagaagcc agtttgttac acgcaacagg catgacatta gcctttccag
      301 cttccgttca tgatgctctg gtttgcagca aaacatttca gatcctatat aaaaatgaag
      361 aagttgtttt aaatgatgtc atgatcttca aagttaaaat gctgttggat gaaagaaaga
      421 ttgaagaaac ccttgaagaa atcagttttt tgttatcgtt gggtctacat ttcacagatg
      481 gagactattc ggcagatgat ctgaatgcct tgcaactaat aagcagtcgg acattgaagc
      541 tgcactatag catctgtaga ggccttcatc accatgcgaa tgtcatgttt gattacttcc
      601 acctgtctgt ggtgtccgtt acagttcacg cgtcattggt tgcactacac cagccgctaa
      661 taagctttcc tcgccctgtg aagaccactt ggttaaatag aaatgcgcca gcacagagca
      721 aagactcggc gattccgact ctggaaagtg tagtctttgg tattaactac acaaaacagt
      781 tatcaccaga tggctgtagc ttcctcattg cagagtcctt cctgcaccat gcctatcatt
      841 ttcattatac actttgtgct actttgctgc tagccttcaa gggattgcac agctacttca
      901 ttacggtaac agaagagatt ccctcttgtc agaaactaga cctggccaag gccagcatgc
      961 aggtcctata tgagcgcctc ctcagaagaa cacagccaag aactcagaac gacacgtgtc
     1021 tagaggaaat ggatgtagaa gctcgtctta ctgaactgtg tgaagaagtt aagaaagtag
     1081 aaaaccctga tgaactggca gaactcatca acatgaacct tgcacagctc tgctcacttc
     1141 tcatggcttt atggggacag tttttggaag ctataacact gcatgaagat ttaagagtgc
     1201 tgttagcaca ggaacaccat actttgaggg ttcgcagatt ttcggaggcg ttcttttgtt
     1261 ttgaacatcc aagagaagct gccattgcat accaagaact ccatgctcag agtcatctac
     1321 agatgtgcac cgctatcaaa aatacttcct tctgcagttc tcttccaccc ctacctattg
     1381 aatgtagtga attagatgga gatctcaatt cattacctat aatctttgaa gataggtatt
     1441 tagattcagt tattgaagac ttagatgcgc cctggatggg aattcaaagt cttcagatat
     1501 cagaggccag taaaacggat aaacatgaga ctgaagaaag ctctgtagta ggactttcta
     1561 gcccagagtt gaaggtcaga cctgctgttg cctccagtaa ttgctataca gaaggtgaaa
     1621 agcagctaac aaaatctcta aaaggaaaga atgaagaatc aaataaatcc aaggttaagg
     1681 tcactaagct catgaaaaca atgaaaccag aaaacacaaa aaagttaata aaacagaact
     1741 ctaaagattc tgtggtttta gtaagctaca aatgtttgaa aactacagcc tcaagtgatt
     1801 tcactaaatg cttggaaggc agtccttcac atagtcagaa ggaaggtctg gatcccacac
     1861 tgtgtgcagg taattttgac ccaaagacct acaccagaca gccaagtcaa aaggaagcta
     1921 gctctttgtc agctaacaca gacagaagtg aacataagtc tccagatact gaaaatatgc
     1981 aaccagacca gttcgagctc ttgaactctg gcagcctaaa tctttgtgca aatttgtcca
     2041 tttcaggtaa acttgctata tcccaagaca atagtgatat tccagatacg gaacacaatc
     2101 tggcatctac aagttcatca aatgattgcc atgactatca gacaacccca tcttcgggag
     2161 ttagaacact tgaagtcaag tccagcagta aagagtcttt caatggagag aaaattactg
     2221 ttaaaatagg accttggaca gagcttcaag aagctgaact atttgtggat aatttactgc
     2281 cagattttga ggccttagac tctaatgata aacccaagtc tatagatata ccacttgaaa
     2341 gggatgcttt acaggagaca aaatgtcatt ctactgaaga atcattaact aaattcagaa
     2401 gtaatctacc tgctccttct acaaaagaat atcatgttgc agtaagtagt gacacgatta
     2461 aattaccaga cactaatgcc acgtatgcct cctctagatt ctcagattca ggtgttgaaa
     2521 gtgaaccaag ttcttttgca acacatccaa atccggagat agcctttgag actctccaag
     2581 ggccaggtcc ttgcaataat gaaaggttat ttcctcagct tttgatgaag cctgatcaca
     2641 atgtaaaatt ttcattagga agtcattgca ctgagagcac aagtgcttta agtgaaatac
     2701 agtcatcttt gacatccata aactccctgc cttcagatga tgaactgtca cccgatgaca
     2761 actgtaagaa gtctgctgtg cctgactgtc atctaagtga cagtaaaact gtattcaatc
     2821 taggaacaat ggatctgcca aaatgcgacg atactaaaaa gtcaagtatt attttgcaac
     2881 aacaaagtgt tgttttttca ggacatttgg acaatgatac gttagcaatg cattccttag
     2941 atttaagcac tgaggaccct ttacggctcg ttttcttgga tgaagatgct tctagtggtg
     3001 tgagaagtag ctggggctcc aaacctcatt tggatgctcc ctttacaggc ccccagagtc
     3061 agggtacatc tagtaacaac tccacggaat cagtgccaac actaaattca aaactgattt
     3121 gcttaggttc tccctgtgtg gtctcaggtt ctgtttgcac tgatgcaggg ctcagtgcag
     3181 atagaactgt ggaaggaaag agcggtgagc cattaaatca caaacaagtg tgttcagcag
     3241 cccctgttgt ggaaagtgac cctctttcca gcagtactga tgtggtaaaa caagggctgg
     3301 tggaaaatta ttttggatct cagagcacta cagatgtttc tgatgcatgt gctattacct
     3361 gccacagtcc agttagctct caggaaacct gcgacaaagg gattagtgat ctgcagcagg
     3421 aacagggcaa agaggaggaa gaggaggatc aagaaatggt tcaaaatggg tatcatgaag
     3481 aaacagattt ttcagctacg gatggaacag taagtgttca ctatataagt ggaaacgagt
     3541 taggagaagg aagacatgaa cagtctgaaa aactaagcag caactatctg agtgctggtg
     3601 tgactgttcc tgctgtttgt acatctggtt gtttgtcctt cccatctgct ctgcgagagt
     3661 ctccttgtgt taaatattct tctagaagta aagttgatgc cattacaaag caaccaagca
     3721 gcatttctta caacttcagt tcttcaacct cctggtatga aaattcacca aaacctcaaa
     3781 tacacgcctt ccttcaggca aaagaagagc tgaagcaact cagactgcct ggtttcatgt
     3841 acagtgatgt tcctctgctg gcatcctcag caccgtactt cagcatggac gaagaggacg
     3901 gctctgagga cggcgtgcat ctcattgtct gtgtccatgg tctagatgga aacagtgcag
     3961 atctccgact agtaaaaaca tacattgaac ttggactgcc tgggggaaga gttgattttc
     4021 ttatgtctga gagaaaccag aatgatactt ttgctgattt tgactgcatg actgatcgcc
     4081 ttttggatga gatcatacag tatattcaga tatatagttt aacagtctca aaaataagct
     4141 ttattggaca ttcgttaggc aatttaataa tccgttcagt gcttacaagg ccaaggttta
     4201 aatattacct cagcaaactt catacctttc tctctctttc tggacctcat cttggtacac
     4261 tctacaacag cagtgctctc gtcaatacag gtctctggtt tatgcagaaa tggaaaaaat
     4321 caggctctct tttacagttg acatgtcgag atcattcaga ccctcgccaa acatttttat
     4381 ataagcttag taataaagcg ggacttcatt atttcaagaa tgttgtgctg gttggatccc
     4441 tgcaggatcg ctatgttcct taccattctg cccgcattga aatgtgtaaa acagctttaa
     4501 aggacaagca gtcaggacaa atctattccg aaatgatcca caacttgctt cgcccagttc
     4561 tgcaaagcaa aggctgtaat ttggttcggt acaatgtcat taatgcgttg cccaacacgg
     4621 ctgattcgct catcggaaga gctgcacaca tagctgttct tgattctgag atatttttag
     4681 agaagttttt cctggttgcc gccctcaaat attttcagta ggaccgaagc atcattagag
     4741 acttaccaat tacctcattc agcagtgatt taaataatgt attatagttg tgtagatgct
     4801 aagtttatga catatttata cctttttata tggaagataa tttatatcat ccatgtgtag
     4861 agccttttaa acatcaactt tactttctag gtaatgtggc tgtgcaatag ttttttaatt
     4921 ttatcttttt acttttctat ttttcatata ttttgctacc taagtatttc agtgaacctt
     4981 gtgcccatgt gtatgtctga tcttttatta ttggcttcca cgatccttat tcagactata
     5041 tcacattaag agctgttatt gctagcatag tattttaaat tctctaattt ggggcttttg
     5101 gtggacaata aattttacct ttaacacttt attctgttta aactggaagt aaaataatgg
     5161 ctgctaaaat gtatttttga aatcaacttc tttaatccta agatattaaa tttacatttg
     5221 atcaaaccag gtggttcata catgccaatg ttttaaaggt tttctataaa atcatattgt
     5281 tgctgttaaa tgtgtcatgc ttattaaaat atatttttac tggtaatttc aacattattt
     5341 ctcatgttga cttttattac tggaactttt cttgttcatg acgagcgtat aaagattttg
     5401 actgccctct gccgtgactt ggctgtaatt ttgttggatt taataatgtt gcttgagctt
     5461 ctcacagcag ctctgtgacc cttttcatag agttccttgt acagaataat taaatgtgga
     5521 aagttatgaa atacttttat gaatttagat aatttttaga tactattaaa atttatcagg
     5581 ctaaaaaatc atgtaaatca aatattcagt ttaaaattga gagacaatta actttacatg
     5641 tttggtggta caaatgcagg tgtttttgat acatgaaaat attgagtctt tacaaaaggt
     5701 gctgattagc attaaattca ctatttttcc tcctgtttta cttgtgaaaa cagtaatgca
     5761 ctgagggtga gtagaaagga ctgtttccgt tcaccgattg ctgtggacaa agggttgttg
     5821 agtctgtgtt gtgtataatg ggtgcgtgtt tatttttagt atcctgttaa ttgcctctga
     5881 tgttaataaa ggagcaatgc cctttctgca gggatagcaa tgacatttgt aatgcttgct
     5941 tactccaaga atgcttgggc gtgcagcagt ggcctgaata acactcctca atgctggatc
     6001 agttccacag tggcatggcc acccagcctc gggggatcct gggctcgctg cacagcaccc
     6061 agatctcttc tgagaatgtg ttcccatcat taagtgataa atggttgcct gtgatttcat
     6121 ccataactcg gtagtgtaat ctttcagata taccaagttc ttaaagaatt tcattgattt
     6181 ttttataatt atttactttt taaaaattat tcaaaatttt tattaactga actaagcaat
     6241 aaattttcca aaggtattgt agctggaaaa
//
