LOCUS       NM_194257               1915 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus family with sequence similarity 118, member B
            (Fam118b), transcript variant 1, mRNA.
ACCESSION   NM_194257
VERSION     NM_194257.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1915)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1915)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC160116.2, AK081206.1 and AK079397.1.
            
            On Nov 8, 2013 this sequence version replaced NM_194257.1.
            
            Transcript Variant: This variant (1) differs in the 5' UTR,
            compared to variant 3. Variants 1 and 3 encode the same protein
            (isoform 1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK169810.1, BC051180.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164138, SAMN01164139
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-25                AC160116.2         99072-99096         c
            26-429              AK081206.1         2-405
            430-1860            AK079397.1         533-1963
            1861-1915           AK081206.1         1609-1663
FEATURES             Location/Qualifiers
     source          1..1915
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 20.12 cM"
     gene            1..1915
                     /gene="Fam118b"
                     /gene_synonym="2310022O21Rik; 2700018L24Rik;
                     C030004A17Rik; Ppp4r1l"
                     /note="family with sequence similarity 118, member B"
                     /db_xref="GeneID:109229"
                     /db_xref="MGI:MGI:1924483"
     exon            1..83
                     /gene="Fam118b"
                     /gene_synonym="2310022O21Rik; 2700018L24Rik;
                     C030004A17Rik; Ppp4r1l"
                     /inference="alignment:Splign:2.1.0"
     exon            84..176
                     /gene="Fam118b"
                     /gene_synonym="2310022O21Rik; 2700018L24Rik;
                     C030004A17Rik; Ppp4r1l"
                     /inference="alignment:Splign:2.1.0"
     exon            177..429
                     /gene="Fam118b"
                     /gene_synonym="2310022O21Rik; 2700018L24Rik;
                     C030004A17Rik; Ppp4r1l"
                     /inference="alignment:Splign:2.1.0"
     exon            430..657
                     /gene="Fam118b"
                     /gene_synonym="2310022O21Rik; 2700018L24Rik;
                     C030004A17Rik; Ppp4r1l"
                     /inference="alignment:Splign:2.1.0"
     exon            658..786
                     /gene="Fam118b"
                     /gene_synonym="2310022O21Rik; 2700018L24Rik;
                     C030004A17Rik; Ppp4r1l"
                     /inference="alignment:Splign:2.1.0"
     exon            787..1072
                     /gene="Fam118b"
                     /gene_synonym="2310022O21Rik; 2700018L24Rik;
                     C030004A17Rik; Ppp4r1l"
                     /inference="alignment:Splign:2.1.0"
     exon            1073..1132
                     /gene="Fam118b"
                     /gene_synonym="2310022O21Rik; 2700018L24Rik;
                     C030004A17Rik; Ppp4r1l"
                     /inference="alignment:Splign:2.1.0"
     exon            1133..1915
                     /gene="Fam118b"
                     /gene_synonym="2310022O21Rik; 2700018L24Rik;
                     C030004A17Rik; Ppp4r1l"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1620..1625
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fam118b"
                     /gene_synonym="2310022O21Rik; 2700018L24Rik;
                     C030004A17Rik; Ppp4r1l"
                     /note="hexamer: ATTAAA"
     polyA_site      1649
                     /gene="Fam118b"
                     /gene_synonym="2310022O21Rik; 2700018L24Rik;
                     C030004A17Rik; Ppp4r1l"
                     /note="major polyA site"
     polyA_site      1667
                     /gene="Fam118b"
                     /gene_synonym="2310022O21Rik; 2700018L24Rik;
                     C030004A17Rik; Ppp4r1l"
     regulatory      1842..1847
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fam118b"
                     /gene_synonym="2310022O21Rik; 2700018L24Rik;
                     C030004A17Rik; Ppp4r1l"
                     /note="hexamer: TATAAA"
     regulatory      1847..1852
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fam118b"
                     /gene_synonym="2310022O21Rik; 2700018L24Rik;
                     C030004A17Rik; Ppp4r1l"
                     /note="hexamer: AATAAT"
     polyA_site      1862
                     /gene="Fam118b"
                     /gene_synonym="2310022O21Rik; 2700018L24Rik;
                     C030004A17Rik; Ppp4r1l"
     polyA_site      1869
                     /gene="Fam118b"
                     /gene_synonym="2310022O21Rik; 2700018L24Rik;
                     C030004A17Rik; Ppp4r1l"
ORIGIN      
        1 gggtcacgtg gggcggtgcg cgctcagtgc ggctgcgccg gccggtagct gcagctggag
       61 cggtggcgtt tggagcagac gcgaaactgg atggcttcta cagggagcca ggcctctgat
      121 aaaaacaaga tttttggatt cttcaatgat ggcgaacccc ccaccaaaaa gcccaggaag
      181 ctgcttccaa gcctgaaaac caaaaagcct cgagaacttg tgctggtgat tgggacaggc
      241 atcagtgctg cggttgcacc gcaggtccca gccctgaaat cctggaaggg cttaatccag
      301 gccttactgg atgctgctat tgattttgat cttttagaag acgaggaaag caaaaagttt
      361 cagaagtgtc tccatgaaga caagaacctc gtccatgtcg cccatgacct cattcagaaa
      421 ctctcccctc gtaccagtaa tgttcgatcc acatttttca aagactgttt atatgaagta
      481 tttgatgacc tggaatcaaa gatggaagat tctggaaaac agctccttca gtctgttctc
      541 catctgatgg aaaatggagc cctagtatta actacaaatt ttgataatct cctagaactc
      601 tatgcagctg accagggaaa acagcttgaa tcccttgacc ttactgatga gaaaaaggtc
      661 ctggagtggg ctcaggagaa gcggaagcta agtgtgctac acatccatgg ggtctacacc
      721 aatcctagcg gcattgtcct ccacccagct ggatatcaga atgtgctcag gaacactgaa
      781 gttatgagag agattcagaa actctatgaa aacaagtcat ttcttttctt gggttgtggc
      841 tggacagtgg acgacaccac tttccaggcc ctgttcctag aggccgtcaa gcataaatct
      901 gacctagaac atttcatgtt ggttcggaga ggagatgtag atgaattcaa gaagcttcga
      961 gaaaacatgt tggacaaggg gataaaggtc atctcctatg gaaatgacta tgctgatctt
     1021 ccagaatatt tcaaacgact gacatgtgag atctccacaa gaggcagatc agcagggatg
     1081 gcaagagaag gtcagctaaa tggttcatct gcagcacatg gtgaaataag aggctgtagt
     1141 acttgagcaa gctggagaaa tcaccactag accatgctgt ggggccttcc tgtggatgtg
     1201 ttaacaagca aacttgcaag aactcaacag agctcccagg aagtaccaat acccagaagt
     1261 tgaagcctgg ggtagaatag gggtggcagt gttgcacctt cccttcatgc tggctgtttc
     1321 ttgatactct gctgcctggt ccagtttaac acccaatgac atcaggaccc aatgcagctc
     1381 ctacctaccc caagactgga caggcttatc tacacagcag accaatgtga tgactcctgg
     1441 ctatggctgc agctctgcag gacttgagga gcaagaagtc atggagtcag tgggctcttg
     1501 ttgcagtttt gtactccact tggtttttca attgagctta tggctttttt aaaacatgac
     1561 ttgaagctct agttttctag atcttttaca gtgtacagta ttttacataa ctgagctgta
     1621 ttaaaagctt gttcatttac ttgccagaac tctggctcta ctttgaagag ttactgttaa
     1681 aaactggcat tcttctattt tcatcatagg gtggtgatcc ttctcaggac aggcacttac
     1741 ccaattcctt agagcactac tagttcctat catgcccttg ccaaaaagaa gctcaagaac
     1801 tatatagtta gtatgagtta gcattcttat tttatatcct gtataaaata atatgaacct
     1861 aagaggcaat ttctttatga aatttatttt cttatataaa ttatgtattt ctctg
//
