LOCUS       NM_133750               2560 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus family with sequence similarity 118, member A
            (Fam118a), transcript variant 2, mRNA.
ACCESSION   NM_133750
VERSION     NM_133750.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2560)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ084461.1 and BC066174.1.
            
            On Apr 1, 2009 this sequence version replaced NM_133750.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC066174.1, AK143690.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-84                CJ084461.1         2-85
            85-1740             BC066174.1         1-1656
            1741-2560           BC066174.1         1658-2477
FEATURES             Location/Qualifiers
     source          1..2560
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 40.25 cM"
     gene            1..2560
                     /gene="Fam118a"
                     /note="family with sequence similarity 118, member A"
                     /db_xref="GeneID:73225"
                     /db_xref="MGI:MGI:1920475"
     exon            1..183
                     /gene="Fam118a"
                     /inference="alignment:Splign:2.1.0"
     exon            184..239
                     /gene="Fam118a"
                     /inference="alignment:Splign:2.1.0"
     CDS             193..1266
                     /gene="Fam118a"
                     /note="isoform 2 is encoded by transcript variant 2;
                     protein FAM118A"
                     /codon_start=1
                     /product="protein FAM118A isoform 2"
                     /protein_id="NP_598511.1"
                     /db_xref="CCDS:CCDS27717.1"
                     /db_xref="GeneID:73225"
                     /db_xref="MGI:MGI:1920475"
                     /translation="MESVEKTTNRSEQKCRKFLKSLIRKQPQDLLLVIGTGVSAAVAP
                     GIRALCSWRSCIEAVIEAAEQLEVLHPGDVAEFRRKVMKDRDLLVVAHDLIRKMSPRT
                     GDTKPNFFQDCLMEVFDSLEQHIQNPVVLRSILSLMDRGTMVLTTNYDNLLEIFGQQQ
                     SKPMESLDLKDKTKVLQWARGHIKYGVLHIHGLYTDPCGMVLDPSGYKDVTQDPEVME
                     VLQNLYRTKSFLFVGCGETLRDQIFQALFLYSVPNKVDLEHYMVVLKENEDHFFKHQA
                     DMLLHGIKVVSYGDCFDLFPGYVQDLATQICKQRSPDAERVDSTTLLGNACQDCAKRK
                     LEENGIEVTKKVRQSDTDDAGGS"
     exon            240..492
                     /gene="Fam118a"
                     /inference="alignment:Splign:2.1.0"
     exon            493..714
                     /gene="Fam118a"
                     /inference="alignment:Splign:2.1.0"
     exon            715..843
                     /gene="Fam118a"
                     /inference="alignment:Splign:2.1.0"
     exon            844..1129
                     /gene="Fam118a"
                     /inference="alignment:Splign:2.1.0"
     exon            1130..1162
                     /gene="Fam118a"
                     /inference="alignment:Splign:2.1.0"
     exon            1163..1246
                     /gene="Fam118a"
                     /inference="alignment:Splign:2.1.0"
     exon            1247..2545
                     /gene="Fam118a"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2526..2531
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fam118a"
                     /note="hexamer: AATAAA"
     polyA_site      2545
                     /gene="Fam118a"
                     /note="major polyA site"
ORIGIN      
        1 agtgcgcgcg cgcgggggga aggccttgag agagcgctgc ggattcggct gggcaggctc
       61 ggcgtggtgc acgcgcagcg ccatccggcg cagcgcccgg cggctccacc cagccgaagg
      121 ggcgcgaccc gggtgggagg cggcgagagc gcgagcgaca ctggtgtctc cgtggcacgg
      181 caggattcac agatggagtc agtggaaaag accacgaaca gaagtgagca gaaatgcaga
      241 aagtttttaa agagcctcat tagaaagcaa ccccaggacc tgctcttggt cattgggact
      301 ggcgtgagcg cagctgtggc cccaggcatc cgagcgctct gctcttggag gagctgcatt
      361 gaggcggtca tcgaggctgc ggagcagctg gaggttctgc accctggcga cgttgctgag
      421 ttccggagga aggtgatgaa ggatcgggac ctgctggttg tggcccatga tctgatccgg
      481 aagatgtcac ctcgcacagg cgacaccaag cccaacttct tccaggattg cctgatggag
      541 gtgtttgaca gcttggagca gcacattcag aacccggtgg tgctgcggtc catcctcagc
      601 ctgatggaca ggggcaccat ggtgctgacc accaactacg acaacctgct ggagatcttc
      661 gggcagcagc agagcaagcc catggagtcc ttggacttga aggataagac gaaggttctt
      721 cagtgggcaa gaggccatat taagtatgga gttcttcata ttcatggttt gtacacggac
      781 ccctgtggga tggtgctgga tccatcgggc tataaagatg tcactcaaga tccggaagtc
      841 atggaagtcc tgcaaaatct ctaccgaacc aagtcattcc tgttcgtggg ctgtggcgag
      901 acacttcggg accagatatt ccaggcgctc ttcttgtact ccgtgccaaa taaggtggac
      961 ttggagcact acatggtagt gctcaaggaa aacgaagacc atttctttaa gcatcaggca
     1021 gatatgcttt tgcatggaat taaagtggtg tcctacgggg actgttttga ccttttcccg
     1081 ggatatgtgc aagaccttgc cactcagatc tgcaagcagc gaagtccaga tgctgagcga
     1141 gtggacagca ccaccttact gggtaatgca tgtcaggact gtgcaaagag gaagttggaa
     1201 gagaatggaa ttgaagtcac aaaaaaagtt agacagtcag atactgatga tgctggaggg
     1261 tcttgaagtt tttaaaactt gaaacttgaa aaccagcctt cagcaaccac agtgccatgc
     1321 ccaagtgatg aggaatgtac agaggactcc atatggatct ctcaatagtg aactgtcaca
     1381 cacccccaaa agagccatgt gggtgtgtgg cctttgtggt tgaatgacag agctctacta
     1441 tgcgtttagc tgctcaggag gtgacatgga cacacttcag gtatactcat aaggacttat
     1501 ggacagctac ctcagggacc aaattgaggg gtgggatgta cctggcattg ttcccttttt
     1561 ccatttgaca tgttttctta tgtcagggtg ttatttttcc taatacatgg aggagaatga
     1621 gtactattcg agcaacagta gttgccaaag agaaaataag acataaacat ttatatttta
     1681 tatctttatg tggaaataca tggaagcatc ttttggctgt agaaagtttt tttttttttt
     1741 aaagatgtgt tggttacagt gttaaacagt aaagcacaag tggatagtag aggggctgaa
     1801 cccactggtg aaaattgttt ttaaagggat gactagatca atttggtttc tttggaattt
     1861 tgacatttta gtaatttctg ttccaaagaa ttggtaaact aactgttagt gagtgttaag
     1921 tccagacaga ctgaagacct ttcccaaagt cttcagtgct gtctagatcc actgtgtgac
     1981 ttccaagtta aaaagggaga gtgaagcaca agatcaagct ttaaactttt agaagttcta
     2041 agctttccaa gtcttatttc tctaggataa ggcccatcct ttctgatctc ctctcttccc
     2101 acggttcata ttaagattta cttggagtgg agtaggcaat actttgaaag ggcttgccaa
     2161 attttaacta cattcaaggt taacttctgg gaaaacaccc atgcttagac tactgcatat
     2221 gtccacagct cctctgatag tgactgtggc aaaggctcac atgttataca gagtggtcct
     2281 gaaaggaaga cttcttagaa acaggtcctg catggttcat ttgaggctat ccatctttga
     2341 tatgatgcca agctctgcct gtgacattgc atggacggca cagtagctcc caagggatat
     2401 tgacaattaa gaacaggaaa cataggttgc tacagggaat gagggagaag ccagagacag
     2461 gctaaagaca cctcctcact cccatgcttt ctaagtgtgg aaaatctttt atgtcactgg
     2521 ttataaataa aatttttaaa gtcaaaaaaa aaaaaaaaaa
//
