LOCUS       NM_001406401            1847 bp    mRNA    linear   ROD 13-JUN-2024
DEFINITION  Mus musculus family with sequence similarity 110, member A
            (Fam110a), transcript variant 5, mRNA.
ACCESSION   NM_001406401
VERSION     NM_001406401.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1847)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1847)
  AUTHORS   Aquino Perez,C., Burocziova,M., Jenikova,G. and Macurek,L.
  TITLE     CK1-mediated phosphorylation of FAM110A promotes its interaction
            with mitotic spindle and controls chromosomal alignment
  JOURNAL   EMBO Rep 22 (7), e51847 (2021)
   PUBMED   34080749
REFERENCE   3  (bases 1 to 1847)
  AUTHORS   Hauge,H., Patzke,S. and Aasheim,H.C.
  TITLE     Characterization of the FAM110 gene family
  JOURNAL   Genomics 90 (1), 14-27 (2007)
   PUBMED   17499476
  REMARK    GeneRIF: localization and preliminary characterization of human
            homologs
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL845161.5.
            
            Transcript Variant: This variant (5) differs in the 5' UTR,
            compared to variant 1. All five variants encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.81679.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: lack of evidence for use of
                                                upstream AUG
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-169               AL845161.5         74471-74639         c
            170-320             AL845161.5         73512-73662         c
            321-1847            AL845161.5         70570-72096         c
FEATURES             Location/Qualifiers
     source          1..1847
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 74.83 cM"
     gene            1..1847
                     /gene="Fam110a"
                     /gene_synonym="1700008J10Rik; 5430432M24Rik"
                     /note="family with sequence similarity 110, member A"
                     /db_xref="GeneID:73847"
                     /db_xref="MGI:MGI:1921097"
     exon            1..169
                     /gene="Fam110a"
                     /gene_synonym="1700008J10Rik; 5430432M24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            170..320
                     /gene="Fam110a"
                     /gene_synonym="1700008J10Rik; 5430432M24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            321..1847
                     /gene="Fam110a"
                     /gene_synonym="1700008J10Rik; 5430432M24Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             397..1287
                     /gene="Fam110a"
                     /gene_synonym="1700008J10Rik; 5430432M24Rik"
                     /codon_start=1
                     /product="protein FAM110A"
                     /protein_id="NP_001393330.1"
                     /db_xref="GeneID:73847"
                     /db_xref="MGI:MGI:1921097"
                     /translation="MPVDTLSPGAPATPALPFRLRTKVPGYLLPRPADGGARKPSAVE
                     RLEADKAKYVKSLRVANTRQEPVQPPLVRQPLFSPGPRGPVLTPSRRVLPCSGRRPQL
                     DLDILSSLINLCDSPVSPSEASRTPGRPEGSAHKVPPATPPRPPPSTVAVRRVDVRPL
                     PASPARPYPSPGTTTTSSPGRPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEAR
                     GLGVAHLARASSDIVSLAGPSAGPCSSEGGCSRRSSATVEERSLDRVPYGVSVIERNA
                     RVIKWLYGLRQARDPPTTEG"
     regulatory      1494..1499
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fam110a"
                     /gene_synonym="1700008J10Rik; 5430432M24Rik"
                     /note="hexamer: AACAAA"
     polyA_site      1512
                     /gene="Fam110a"
                     /gene_synonym="1700008J10Rik; 5430432M24Rik"
     regulatory      1821..1826
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fam110a"
                     /gene_synonym="1700008J10Rik; 5430432M24Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1847
                     /gene="Fam110a"
                     /gene_synonym="1700008J10Rik; 5430432M24Rik"
                     /note="major polyA site"
ORIGIN      
        1 attgtgatca gctcttacca gctgtcgcct ttgtcctagc tgaggcttag gtctgccctt
       61 ctggatcggg cttagagacc cttggcgggg gcggggtcta ctcactccac agtcagagcc
      121 tcagtctatg acagtgcgtc tggtttccgg agcgctgccc attttccagt ttaggacaca
      181 cttgtggaat atctagcatg tattgagagc cacatcatga agctgagact cagtgaacaa
      241 agcagccgaa acctgtgccc tcgtggagct gacattatag gggattgggg acagcaaaga
      301 aagaaagagc cttatccaca cggagcccgg tatcctgctg ccaactttgt gcctgtatct
      361 gtcttctcgc cactgccctc ggggtatgta acggccatgc ctgtggatac gctgagcccc
      421 ggagcccccg ccactcccgc cctacctttt cgcctgagaa ccaaggttcc cggctacctg
      481 ctaccaaggc cagcagacgg gggagccagg aaaccgagtg ctgtggaacg cctggaggct
      541 gataaggcta agtacgtcaa gagcctgcgt gtggccaaca cccgccaaga gccggtgcag
      601 cccccgctgg tcagacagcc cctcttcagc cctggtcctc gcggcccagt gctcacaccc
      661 agtcgccgag tcctgccctg ttctggccgc cggccccaac tggacctcga catccttagc
      721 agcctcatca acttgtgtga tagtcctgtg tccccatctg aggccagccg aacacctgga
      781 aggccagaag gatctgccca caaggtccca ccagccaccc ctcctcgtcc gccacccagt
      841 actgtcgcgg tgcgccgagt ggacgttcgt cccttgcctg cttcacctgc tcggccctat
      901 ccatcacctg gcaccactac cacttccagc cccggccggc cccctggcct gcagcggtcc
      961 aagtcggact tgagtgagcg cttttccagg gcagcagccg atcttgagcg cttttttaac
     1021 ttctgtggcc tggacccaga ggaagcgcga ggattggggg tggcccactt agcaagggcc
     1081 agctcggaca tcgtgtctct agccgggcca agtgctggac cttgcagctc tgaagggggc
     1141 tgctcacgcc gcagctctgc tacagtggaa gagcggtccc tggatcgtgt cccctatggg
     1201 gtgtctgtga tcgagcgaaa cgctcgtgtg atcaagtggc tatatgggtt gcggcaggct
     1261 cgtgaccctc ccaccactga gggttaggcc tcctggactg gggtttcccg ggaagacatc
     1321 gtgaagagac agttggcact ttgtcctttc ctgtatccat tggctgcctt cctgcagacc
     1381 cagagactct tgggtgaatt taatgtagag gccaagactt agaccagcat cctctggcaa
     1441 gcaaggactg acccacagaa gtttgctgtt gcccttggcc taccccaccc cctaacaaag
     1501 tttgcgacac aagtgtgctt ctgcctgttt cctccggtga cactggattt gggtcgcgta
     1561 ccctccactg agttggggat caagtgcttt gccaagtctg tctgccccag gccctatttc
     1621 cttcttccct gtctgtcctc ttttgctgac ttcctcttcc ttacccagag ggcccttgct
     1681 tcctgggaac tcaccccggg gaggaggttg agaggatggg gcctgtctgc tggtcttcct
     1741 ggtctttggc agttggccta ggtgggtaga cttgtaggag ggactggtta ggagcctggt
     1801 gctctgaagt ctctgtggct aataaacaca aatgttcgtt ttctcaa
//
