LOCUS       XM_006527438            3541 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus fatty acid desaturase 1 (Fads1), transcript
            variant X1, mRNA.
ACCESSION   XM_006527438
VERSION     XM_006527438.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000085.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006527438.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3541
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="19"
     gene            1..3541
                     /gene="Fads1"
                     /gene_synonym="0710001O03Rik; A930006B21Rik; DSD"
                     /note="fatty acid desaturase 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 33
                     mRNAs, 29 ESTs, 4637 long SRA reads, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 32 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:76267"
                     /db_xref="MGI:MGI:1923517"
     CDS             618..1589
                     /gene="Fads1"
                     /gene_synonym="0710001O03Rik; A930006B21Rik; DSD"
                     /codon_start=1
                     /product="acyl-CoA (8-3)-desaturase isoform X1"
                     /protein_id="XP_006527501.1"
                     /db_xref="GeneID:76267"
                     /db_xref="MGI:MGI:1923517"
                     /translation="MGLMKANHLFFLVYLLHILLLDVAAWLTLWIFGTSLVPFILCAV
                     LLSTVQAQAGWLQHDFGHLSVFGTSTWNHLLHHFVIGHLKGAPASWWNHMHFQHHAKP
                     NCFRKDPDINMHPLFFALGKVLPVELGREKKKHMPYNHQHKYFFLIGPPALLPLYFQW
                     YIFYFVVQRKKWVDLAWMLSFYARIFFTYMPLLGLKGFLGLFFIVRFLESNWFVWVTQ
                     MNHIPMHIDHDRNVDWVSTQLQATCNVHQSAFNNWFSGHLNFQIEHHLFPTMPRHNYH
                     KVAPLVQSLCAKYGIKYESKPLLTAFADIVYSLKESGQLWLDAYLHQ"
ORIGIN      
        1 ggggctcggc ggtccgcgcc aagggtgctg aaaaccctgc gcgcgaacgg cggtctccgg
       61 gcgcgcgctc gaggcagccc gacgctcccc tagttcgcga gcctggcgtg cgctgccccg
      121 cggcccggag cgcgcacctc tcagactcca gcttcccccg ccaagcttgc tatggctccc
      181 gacccggtgc cgacccctgg cccggcctcc gcccagctcc gccaaacgcg ctactttact
      241 tgggaggagg tggcgcagcg ctccgggcgg gagaaggagc gatggctcgt gatcgaccgg
      301 aaggtgtaca acatcagcga cttcagccgc cgccacccgg ggggctcccg ggtcatcagc
      361 cactacgcgg gtcaggatgc cacggatcct tttgtggcat tccacatcaa caagggtctt
      421 gtgagaaagt atatgaactc tcttctgatt ggagagctgg ctccggagca acccagcttt
      481 gaacccacca agaatgtgag aggccatgtt tgctgtttgg agacttagtt gtggagggag
      541 agggggcaaa tgcctgcata ggatcacaga aagcgctaac tgatgaattc cgggagctgc
      601 gggccacagt agagcgaatg ggcctcatga aggccaacca cctcttcttc ctggtctacc
      661 tgcttcacat cctgctgctg gatgtggctg cctggctcac cctttggatc tttggaactt
      721 ccttggtgcc cttcatcctc tgtgcagtac tgctcagtac agttcaggct caggcaggtt
      781 ggctacagca tgactttggg cacctgtcag tctttggcac ctcgacatgg aatcacctgc
      841 tacatcattt tgtgattggc cacctgaagg gggcccccgc cagctggtgg aaccacatgc
      901 atttccagca ccatgccaag cctaactgct tccgcaagga ccccgatatc aacatgcacc
      961 ccctcttctt cgccctgggg aaggtccttc ctgtggagct cgggagggaa aagaagaagc
     1021 acatgccata caaccatcag cacaagtact tcttcctcat cggaccccca gccttgctgc
     1081 ctctatactt ccagtggtat attttctatt ttgtggttca gcggaaaaaa tgggtggact
     1141 tggcctggat gctcagcttc tatgcccgca tcttcttcac ttacatgccg ctgctggggc
     1201 tgaaaggctt cctgggcctt ttcttcattg tcaggttcct ggaaagcaac tggtttgtgt
     1261 gggtgacaca gatgaaccat atccccatgc acattgatca cgaccggaat gtggactggg
     1321 tctccaccca gctgcaggca acctgcaacg ttcaccaatc agccttcaac aactggttca
     1381 gtggccacct aaatttccag attgaacacc acctcttccc caccatgccg cggcacaact
     1441 accacaaggt ggcaccccta gtacaatccc tgtgcgccaa gtacggcatc aagtatgagt
     1501 ccaagcccct gctcacagcc ttcgcggaca ttgtttactc cctgaaggag tcagggcaac
     1561 tctggttgga cgcttacctt caccaatagc agcagcagac ctccatatgg aggaggaaga
     1621 ggacacctgg agccaaagca ggagttggag ggacaatgcc actatgaatc taatgtttaa
     1681 aaggttaggg aacatggata ttcgtactca catctgcgcc cctccccctt gccttctggg
     1741 taccaaactt gagggagggg agagctgttg aagcaggaat tcaaaactgt tatttcttct
     1801 actttggcag gggaggggga caaatggtgg tacctacaga gctctgcatg aagtagggac
     1861 cccacactag ataacccctc ttgtaaagta tgagcccatc tcactgggct atctgactct
     1921 ccaccctcct tgttagtctc tgaggaacag tgcaactcct tcgaacatga tttagaaaga
     1981 gggcattcat gcatagaatt ctgaggcctg gcacaactcc ctgcccagga gcacagcttg
     2041 ctgctgaggg ctgggtgtga ccgtgtctgc ctctggctgc tgggagaagc tgtttttcag
     2101 tttcagaagc aggcaggaca aaggccagga ctgtggtttg ggaggcattt ggccctggaa
     2161 ggtcctggca cacgcaattc ttgggtctca ttccatccag gttccagaga gaacattaga
     2221 tcttagctct tgacaaaacg gatggcagat actggccttt gaaactctgt tgattcatct
     2281 cttctaatcg gtccccaagg agaaagaaca taaacaaaga gtgaggtctt ccctcccact
     2341 gaacactatt cccatagttt ccttttgctc cccagcctgt aattctaagt tcaacaaaac
     2401 agttgtcaac aaaagtgact gaggcttcca ccagagtgcc agggctctgt gcagactcag
     2461 aatccctgtt ccctatgtca cgttccagca ttgtatagca cagttccatg tcacaaacag
     2521 gaaggttaga aacactaagg tctgtgaaca tcactgctgc agcgaggcag ctcctctgtc
     2581 tactcgttca agtgtcttac tctactggat gctggataga aatttagggt aacttctgac
     2641 aaagtgtgcc ggtctaacaa taaaataggg ttttgtaatc ttctggttgg taaaagatat
     2701 gttccggaga atataggaac atgcccggag agacctaacc tgtatgtcca ctttcatgct
     2761 cttgttcccc aaacccctgg gcattgttgt ctgctcaaga gattctactg gaagcatgat
     2821 gacccacctg tctgggaaga gaaaacctca agaaggcaaa gtgcagtgcg tgtttgtggt
     2881 caagatgagg gtgttaaggg atgttggagt ctggtgtaga gacaggcagg ttgcagaaaa
     2941 gcacagatct ttgccagtgg ttggccctga ttgaaaacct gtttgaaaca gactgtgtag
     3001 gaaaaatcag gattaaagag tgctgccttt atggctcctt cttcagaata ggtgcagacc
     3061 cctccccgtg cccgttccct gccacccggg gtaaggaggt ggcactacca gtctgtctaa
     3121 cccactcact ggctttgacc ttcaactgcc agtctgggca aataccagtg agctctgttg
     3181 taccaagacc aggtcttcag agcatctgaa ccactgtggc cttctcttct cagccttcac
     3241 tgtgacacgg gggacattga gtgacaagcc tcagaatgtt acagaggtaa agtgaggcat
     3301 ctcaaatcca ctgacagata agaaaaccgc gttagaggga aagtcacctc tgctattgta
     3361 gaaagtggca gaatatccaa acttaactct agcttccatg tctgtcttta ttaccttcat
     3421 cttcctactt cctgtcccac cggcatctca cttaattgag cctaatgtca gtatctgtgt
     3481 gtgccaatgc tgttaccaca tcctggtgaa gctaaaaaat aaaatttaat ttggaccaaa
     3541 a
//
