LOCUS       NM_011598                661 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus fatty acid binding protein 9, testis (Fabp9), mRNA.
ACCESSION   NM_011598 NM_027281
VERSION     NM_011598.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Islam,A., Kagawa,Y., Sharifi,K., Ebrahimi,M., Miyazaki,H.,
            Yasumoto,Y., Kawamura,S., Yamamoto,Y., Sakaguti,S., Sawada,T.,
            Tokuda,N., Sugino,N., Suzuki,R. and Owada,Y.
  TITLE     Fatty Acid Binding Protein 3 Is Involved in n-3 and n-6 PUFA
            transport in mouse trophoblasts
  JOURNAL   J Nutr 144 (10), 1509-1516 (2014)
   PUBMED   25122651
REFERENCE   2  (bases 1 to 661)
  AUTHORS   Selvaraj,V., Asano,A., Page,J.L., Nelson,J.L., Kothapalli,K.S.,
            Foster,J.A., Brenna,J.T., Weiss,R.S. and Travis,A.J.
  TITLE     Mice lacking FABP9/PERF15 develop sperm head abnormalities but are
            fertile
  JOURNAL   Dev Biol 348 (2), 177-189 (2010)
   PUBMED   20920498
  REMARK    GeneRIF: FABP9 plays only a minor role in providing the murine
            sperm head its characteristic shape and is not absolutely required
            for spermatogenesis or sperm function.
REFERENCE   3  (bases 1 to 661)
  AUTHORS   Kido,T., Arata,S., Suzuki,R., Hosono,T., Nakanishi,Y., Miyazaki,J.,
            Saito,I., Kuroki,T. and Shioda,S.
  TITLE     The testicular fatty acid binding protein PERF15 regulates the fate
            of germ cells in PERF15 transgenic mice
  JOURNAL   Dev Growth Differ 47 (1), 15-24 (2005)
   PUBMED   15740583
REFERENCE   4  (bases 1 to 661)
  AUTHORS   Puskas,L.G., Bereczki,E., Santha,M., Vigh,L., Csanadi,G.,
            Spener,F., Ferdinandy,P., Onochy,A. and Kitajka,K.
  TITLE     Cholesterol and cholesterol plus DHA diet-induced gene expression
            and fatty acid changes in mouse eye and brain
  JOURNAL   Biochimie 86 (11), 817-824 (2004)
   PUBMED   15589691
REFERENCE   5  (bases 1 to 661)
  AUTHORS   Korley,R., Pouresmaeili,F. and Oko,R.
  TITLE     Analysis of the protein composition of the mouse sperm perinuclear
            theca and characterization of its major protein constituent
  JOURNAL   Biol Reprod 57 (6), 1426-1432 (1997)
   PUBMED   9408250
REFERENCE   6  (bases 1 to 661)
  AUTHORS   Oko,R. and Morales,C.R.
  TITLE     A novel testicular protein, with sequence similarities to a family
            of lipid binding proteins, is a major component of the rat sperm
            perinuclear theca
  JOURNAL   Dev Biol 166 (1), 235-245 (1994)
   PUBMED   7958448
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC113990.10, BC048437.1 and CN837748.1.
            
            On Nov 9, 2012 this sequence version replaced NM_011598.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments. An in-frame
            AUG is located 10 codons upstream of the annotated translation
            start site but is not being annotated as a start site since it is
            not conserved and is in a weak Kozak sequence context.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BU936915.1, CA464414.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on single protein-coding
                                                transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-61                AC113990.10        155995-156055       c
            62-642              BC048437.1         1-581
            643-661             CN837748.1         354-372
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 2.55 cM"
     gene            1..661
                     /gene="Fabp9"
                     /gene_synonym="1700007P10Rik; Perf; Perf15; Tlbp"
                     /note="fatty acid binding protein 9, testis"
                     /db_xref="GeneID:21884"
                     /db_xref="MGI:MGI:1194881"
     exon            1..192
                     /gene="Fabp9"
                     /gene_synonym="1700007P10Rik; Perf; Perf15; Tlbp"
                     /inference="alignment:Splign:2.1.0"
     CDS             120..518
                     /gene="Fabp9"
                     /gene_synonym="1700007P10Rik; Perf; Perf15; Tlbp"
                     /note="T-FABP; PERF 15; 15 kDa perforatorial protein;
                     testis lipid-binding protein; testis-type fatty
                     acid-binding protein"
                     /codon_start=1
                     /product="fatty acid-binding protein 9"
                     /protein_id="NP_035728.2"
                     /db_xref="CCDS:CCDS17237.1"
                     /db_xref="GeneID:21884"
                     /db_xref="MGI:MGI:1194881"
                     /translation="MIEPFLGTWKLISSENFENYVRELGVECEPRKVACLIKPSVSIS
                     FNGERMDIQAGSACRNTEISFKLGEEFEETTADNRKVKSLITFEGGSMIQVQKWLGKQ
                     TTIKRKIVDGKMVVECTMNNVVSTRIYERV"
     exon            193..365
                     /gene="Fabp9"
                     /gene_synonym="1700007P10Rik; Perf; Perf15; Tlbp"
                     /inference="alignment:Splign:2.1.0"
     exon            366..467
                     /gene="Fabp9"
                     /gene_synonym="1700007P10Rik; Perf; Perf15; Tlbp"
                     /inference="alignment:Splign:2.1.0"
     exon            468..647
                     /gene="Fabp9"
                     /gene_synonym="1700007P10Rik; Perf; Perf15; Tlbp"
                     /inference="alignment:Splign:2.1.0"
     regulatory      628..633
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fabp9"
                     /gene_synonym="1700007P10Rik; Perf; Perf15; Tlbp"
                     /note="hexamer: AATAAA"
     polyA_site      647
                     /gene="Fabp9"
                     /gene_synonym="1700007P10Rik; Perf; Perf15; Tlbp"
                     /note="major polyA site"
ORIGIN      
        1 gcttcaggaa tgccacgtga caaagatgtt ctttaaaaga aggggctggc ggcacagcga
       61 tgcccacact tcatggtttt cggttgtgaa tgcctggtct gcccagaaag ctgtgcacga
      121 tgattgagcc cttcttaggc acctggaaac tgatctccag cgaaaacttt gagaattacg
      181 tgagagaact gggagtggaa tgtgagcccc ggaaagtcgc atgtttaata aagccaagcg
      241 ttagtattag tttcaatggg gaaaggatgg acatccaagc aggaagtgca tgcaggaaca
      301 cggagatctc tttcaagttg ggggaagaat ttgaagagac cactgcagac aaccgaaaag
      361 tgaagagcct tataaccttt gaaggtgggt caatgatcca ggtccaaaaa tggcttggca
      421 aacagacaac aattaaaaga aaaattgtgg atggaaaaat ggtagtggag tgcaccatga
      481 acaatgttgt cagcactagg atctacgaaa gggtgtagca gaagggtaga caccagcaag
      541 aacttggcca ccacaaagaa cttgccgctc aagaaagcca gccccaggga cagtgattta
      601 agacatcacc agcattaagt tttgctcaat aaaagcacta attgaaaaaa aaaaaaaaaa
      661 a
//
