LOCUS       NM_001190445            1076 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus Fanconi anemia core complex associated protein 20
            (Faap20), transcript variant 1, mRNA.
ACCESSION   NM_001190445
VERSION     NM_001190445.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1076)
  AUTHORS   Zhang,T., Wilson,A.F., Mahmood Ali,A., Namekawa,S.H.,
            Andreassen,P.R., Ruhikanta Meetei,A. and Pang,Q.
  TITLE     Loss of Faap20 Causes Hematopoietic Stem and Progenitor Cell
            Depletion in Mice Under Genotoxic Stress
  JOURNAL   Stem Cells 33 (7), 2320-2330 (2015)
   PUBMED   25917546
REFERENCE   2  (bases 1 to 1076)
  AUTHORS   Lin,Q., Donahue,S.L., Moore-Jarrett,T., Cao,S., Osipovich,A.B. and
            Ruley,H.E.
  TITLE     Mutagenesis of diploid mammalian genes by gene entrapment
  JOURNAL   Nucleic Acids Res 34 (20), e139 (2006)
   PUBMED   17062627
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK011291.1 and AL670413.19.
            
            Transcript Variant: This variant (1) encodes the longer isoform
            (a).
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC096420.1, AK011291.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-94                AK011291.1         2-95
            95-95               AL670413.19        208712-208712
            96-891              AK011291.1         96-891
            892-892             AL670413.19        215155-215155
            893-1072            AK011291.1         892-1071
            1073-1076           AL670413.19        215336-215339
FEATURES             Location/Qualifiers
     source          1..1076
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 86.17 cM"
     gene            1..1076
                     /gene="Faap20"
                     /gene_synonym="2610002J02Rik"
                     /note="Fanconi anemia core complex associated protein 20"
                     /db_xref="GeneID:67513"
                     /db_xref="MGI:MGI:1914763"
     exon            1..97
                     /gene="Faap20"
                     /gene_synonym="2610002J02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            98..242
                     /gene="Faap20"
                     /gene_synonym="2610002J02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            243..523
                     /gene="Faap20"
                     /gene_synonym="2610002J02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            524..1076
                     /gene="Faap20"
                     /gene_synonym="2610002J02Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1051..1056
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Faap20"
                     /gene_synonym="2610002J02Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1073
                     /gene="Faap20"
                     /gene_synonym="2610002J02Rik"
                     /note="major polyA site"
ORIGIN      
        1 aagtctcact tccgccggac gctgtttgga gaaggatgga ggaggagcgg agactgcggg
       61 ggaggctgag ccgtcggagg ccgcccgcgg ggggcgggcc ccctaactgc cgcccttggt
      121 ttctctcgga gggaagtaag agtgagccct gggctgctct gttgcgcagc accgtgagcg
      181 ggaccgcgga ttggaccccg aaccgtcagc cattaccacc gctgcctgct tttcccagcc
      241 aggagtctct acctgaccca gagtccactg tgcctcctga ggccttcact gtgggatcca
      301 agactttctc ctggacgcct ttgccacctg cccttcgtgg ctctggaagc tcccgccacc
      361 tgttctgtga acctgaaggc tccctggggt cacctactcc atccctgaaa ggatgccctg
      421 cactaaattc tggtcgaact cccagcgccc aggagtgtgt gcctgtgcag agtccacttg
      481 cgttgctgag ttgcccgttg tgccagaagg cgtttgaccc gaagctgacc cagctagatg
      541 tggatagcca ccttgctcag tgcttggctg agtgcaccga agatgtggtg tggtgagcat
      601 cagggtgcct tgctgtatct ccttcaaacc tacacaccga cattggatgt ggcttctgag
      661 acatcgtcgt gtggacacct gagtattggc tccttctggt tttgttcatg ggcattggac
      721 ataatgctgg tcactgacag caggcagcac tgatcctctg tggactcatc ttcattgtca
      781 gcctgacagg atgtggaatc acccaggaga cacatctcag gtgtgcctgt gaaaccgttc
      841 ccagagatta cctgggacag gaagtcccag ctgaatgtgg gtggcaccgt ggcctggggt
      901 cccactgatt gaaaagggaa aatggagaaa ttgagctgtt tcctcactgg ggatgtgatg
      961 agatgcaccg ctcgcctgct acggcagcca tagctacttt tgctactgtg ccctccttgc
     1021 cacagggact gtaccttaac tgtgagccag aataaatttt aagttgcttt ccagta
//
