LOCUS       NM_027980               3175 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus Fanconi anemia core complex associated protein 100
            (Faap100), mRNA.
ACCESSION   NM_027980 XM_126658
VERSION     NM_027980.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3175)
  AUTHORS   Xu,W., Yang,Y., Yu,Y., Wen,C., Zhao,S., Cao,L., Zhao,S., Qin,Y. and
            Chen,Z.J.
  TITLE     FAAP100 is required for the resolution of transcription-replication
            conflicts in primordial germ cells
  JOURNAL   BMC Biol 21 (1), 174 (2023)
   PUBMED   37580696
  REMARK    GeneRIF: FAAP100 is required for the resolution of
            transcription-replication conflicts in primordial germ cells.
            Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL669855.20.
            
            On Feb 6, 2008 this sequence version replaced NM_027980.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK082976.1, AK148234.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164137
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-205               AL669855.20        40347-40551         c
            206-324             AL669855.20        40133-40251         c
            325-1280            AL669855.20        38511-39466         c
            1281-1437           AL669855.20        37222-37378         c
            1438-2207           AL669855.20        35687-36456         c
            2208-2344           AL669855.20        34912-35048         c
            2345-2461           AL669855.20        33915-34031         c
            2462-2548           AL669855.20        32500-32586         c
            2549-2684           AL669855.20        32089-32224         c
            2685-3175           AL669855.20        31367-31857         c
FEATURES             Location/Qualifiers
     source          1..3175
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 84.08 cM"
     gene            1..3175
                     /gene="Faap100"
                     /gene_synonym="2310003H01Rik"
                     /note="Fanconi anemia core complex associated protein 100"
                     /db_xref="GeneID:71885"
                     /db_xref="MGI:MGI:1919135"
     exon            1..205
                     /gene="Faap100"
                     /gene_synonym="2310003H01Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             41..2680
                     /gene="Faap100"
                     /gene_synonym="2310003H01Rik"
                     /note="fanconi anemia-associated protein of 100 kDa"
                     /codon_start=1
                     /product="Fanconi anemia core complex-associated protein
                     100"
                     /protein_id="NP_082256.2"
                     /db_xref="CCDS:CCDS49004.1"
                     /db_xref="GeneID:71885"
                     /db_xref="MGI:MGI:1919135"
                     /translation="MAGASSRVHYLSDFCCPLGGRAAGKPFVLRHEAEVFLSTGREFV
                     YVYDQEGGLLTAVYQFPDQVWHLQLLAIRRALYVLCARTGIYCLSLDSLDRSGSQACE
                     DKEEAAPPYPVIHVDPDACVLPDAALCAFTVLDDMLVTLAQGPTQWKMQLFERPCAGE
                     EPLPRGQIGEVELSTCTPPGGVPEKPAAPRFLPVLCCVFPPDSRAPHGHPQGCGCFTL
                     EEALFGLLFGVDATLLQSPVILCGLPDGQLCCVVLKALVTSGLAPGDPKVLVKILHHL
                     EEPVIFIGALRAEPHEEEAAGELLPGQHEHSDCLVALGHQGRTLAIKASWSESGNLVP
                     ELREYCLPGPVLCAACDRDGHVYHSTPSDLCVVDLTRRDSPWNPEKPDGAIGGLPSVL
                     CPASLNICSALALCVTARAPTGSTELLALSSKGRLITCSLDLNSEAPVPAKMAMANAG
                     QKIKELLLDIGDVSERVSFLKKAVDQRNKAITSLNEAMNVSCALLSHPEGDRPIACTI
                     TTSWSRLELRDMLMATCTLENSSSFSLDQGWTLCIQVLTSSSALDLDGTGSAFTYTIP
                     VDRLGPGSRREVTLPLGPSESGVLDLPVTMSCWLFYSLREVVGAALAPSDPLEAPYLE
                     QFPLSLPKQEGVCLPLCKRTVDMLQCLRFAGAATHPAQAPCMPGPACEPVETFLKTCQ
                     APGSEPTGAASLRAKYLPPSTASIRVSAGLLRAALEDSHSGFHLCSATLRWLLAENAA
                     VDVVRAQTLSSIQGIAPDGTDVNLTVHEVAVTDLSPAGPIQAVEIQVESSSLANMCRA
                     HHAIIRRIQTMVTEQAALGSSPPDLRMQYLQQIHANHQELLREVQALRDQLCTEDELS
                     SCSTAQKLLHIYKQLRNPSLVLL"
     exon            206..324
                     /gene="Faap100"
                     /gene_synonym="2310003H01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            325..1280
                     /gene="Faap100"
                     /gene_synonym="2310003H01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1281..1437
                     /gene="Faap100"
                     /gene_synonym="2310003H01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1438..2207
                     /gene="Faap100"
                     /gene_synonym="2310003H01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2208..2344
                     /gene="Faap100"
                     /gene_synonym="2310003H01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2345..2461
                     /gene="Faap100"
                     /gene_synonym="2310003H01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2462..2548
                     /gene="Faap100"
                     /gene_synonym="2310003H01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2549..2684
                     /gene="Faap100"
                     /gene_synonym="2310003H01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2685..3175
                     /gene="Faap100"
                     /gene_synonym="2310003H01Rik"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      3175
                     /gene="Faap100"
                     /gene_synonym="2310003H01Rik"
                     /note="major polyA site"
ORIGIN      
        1 accgcccctc cgggctgagc tctggcccgg cgcccgcagg atggcgggcg cttcctcgcg
       61 cgtgcactac ctgtcggact tctgctgccc gctcggaggc cgagcggcgg ggaagccgtt
      121 tgtgctgcgg catgaggctg aggtctttct gtccaccgga cgcgagttcg tctatgtgta
      181 tgaccaggag ggcgggctgc tgacggcggt gtaccagttt cccgaccagg tatggcacct
      241 gcagctcctg gccatccgca gggcactcta cgtcctgtgt gcccggactg gcatctactg
      301 cctgtcgttg gactcgctgg acaggtctgg gagccaggcc tgtgaggaca aagaggaagc
      361 ggctcccccc taccctgtga tccatgtgga cccggatgcg tgtgtcctcc ctgacgctgc
      421 cctctgtgcc ttcaccgtgc tggatgatat gctggtcacc ctggcacagg gccccaccca
      481 gtggaagatg cagctgtttg agcgtccctg tgcaggggag gagcctctgc ccagaggcca
      541 gattggtgag gtggagttgt ccacttgcac cccaccaggt ggggtgccag agaagcctgc
      601 agccccccgc ttcctgcccg tgctgtgctg cgtgttccca ccagactcca gggcacctca
      661 tggtcacccc cagggctgtg ggtgcttcac gctggaggag gctctctttg gtctactctt
      721 tggagtcgat gccaccctcc tgcagtcccc tgtgatcctc tgcggtctcc ctgatggcca
      781 gctttgttgt gtggtcctga aggccttggt tacttctggg ttagcccctg gtgacccaaa
      841 ggtcctggtc aagatcctcc accacctaga ggagcctgtg atcttcattg gggctttgag
      901 ggcagagcca cacgaggagg aagcagcagg agagctgctg cctggccagc atgaacactc
      961 tgactgccta gtagcccttg gtcaccaggg ccggacactg gccatcaagg ccagctggag
     1021 tgagtcaggg aatctggtgc cggagctgcg tgagtattgc ctcccagggc ctgtgctctg
     1081 tgctgcctgt gacagggatg gccacgtgta ccacagcact ccctcagacc tctgtgtggt
     1141 agacttgact cggagagaca gtccttggaa ccctgagaag ccagacgggg ccataggagg
     1201 tctaccctct gtgctgtgcc cagccagctt gaacatctgc agcgccctgg ctctgtgtgt
     1261 gacagcaagg gcacctacag gtagcaccga gctcctcgcc ctgtcttcta aaggacgcct
     1321 gatcacctgc agtctggact tgaactctga ggcgcctgtg cctgccaaaa tggccatggc
     1381 aaatgcaggc cagaaaatta aggagctgct cttggacatc ggtgatgtct ctgaaagggt
     1441 gtcctttctg aagaaagctg ttgaccaacg caacaaggcc atcacaagtc tcaacgaggc
     1501 catgaacgtg agctgtgccc tgctgtccca tccagagggc gatcggccca tcgcgtgcac
     1561 catcaccacc tcctggagcc gcctggagct gcgagacatg ctgatggcca cctgcacact
     1621 agagaacagc agcagcttca gcctggacca gggctggacc ttgtgtattc aggtgctgac
     1681 tagttcctct gccttagacc tggatgggac tggttcagct ttcacctaca ccattccagt
     1741 ggacagactg ggtccaggca gccggcggga agtgacgttg cccctgggcc ctagtgagag
     1801 tggtgtgctc gacctgcctg tgaccatgtc ctgctggctc ttctacagcc tcagggaggt
     1861 ggtgggtgcg gccctggccc cctcagaccc tctagaggcc ccctacttgg agcagttccc
     1921 tctcagcctt cctaagcaag agggcgtctg cctgcccctg tgcaagcgca cagtggacat
     1981 gctgcagtgc ctgcgcttcg ccggcgcagc cacacaccct gcacaggccc cctgtatgcc
     2041 tggccctgcc tgtgagcctg tggaaacttt cctgaagacc tgccaagccc ctggcagcga
     2101 gcctactggc gctgcctccc tacgggccaa gtacctgcct ccatccacag cctccatcag
     2161 ggtgtctgca ggccttctca gagctgccct ggaagacagt cactcaggtt tccacctgtg
     2221 cagcgccacc ctgcggtggc tccttgccga gaacgctgct gtggatgttg tgcgggccca
     2281 gacactgtct tccatccagg gaatagcccc agatggaact gatgtcaacc tcaccgtcca
     2341 tgaggtagct gtgacggatt tgagccctgc aggccccatt caggctgtgg agatccaagt
     2401 ggagagctcc tctctggcca acatgtgtag ggcgcaccat gccatcatca gacgaataca
     2461 gacaatggtc acagagcaag cagccctagg ctccagccca cctgacctcc gcatgcagta
     2521 tctacagcag atccatgcca accaccagga actgctccgt gaggtgcaag cactgcgcga
     2581 ccagctgtgc acagaggatg agctgagctc ctgctccacg gcccagaagc tcctgcacat
     2641 ttacaagcag ctgcgcaacc ctagcctcgt cctgttgtga ccagctgctg gccggctcca
     2701 cgtcactgca ggacacactt ggggcttgcc tggcagcatt cctcaactgg aacctctgca
     2761 ccctgatggg aaataccgtc acccaagaac tcaggccatg gagacacagg gtttctgggg
     2821 ctcagacttc caagtttgct gaccccagca caccccagga gtgctggctg cctctctggg
     2881 gccaccaggg ggcagagtgc tcactgcaac caaagcacaa agaccatggg agagctcccg
     2941 gcgacacctg ccaggcatgg gctgccccca gcactgtgct gctctctggt ccctgtccca
     3001 gcctcctcct tcagctgggc cctgccctgc tgctggtgct gtcgttgccg tgggagggga
     3061 gcgtgtccac agagctctgt gcctgctcct gttgtctgtc tgtgaggtgc tgtgctgaca
     3121 agctgccttt tgtgaagttc caggtgtcca ctgaagtcca ctcagttcta ccctc
//
