LOCUS       NM_001081090            3392 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus ESF1 nucleolar pre-rRNA processing protein homolog
            (Esf1), mRNA.
ACCESSION   NM_001081090 XM_130548
VERSION     NM_001081090.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3392)
  AUTHORS   Coulpier,F., Le Crom,S., Maro,G.S., Manent,J., Giovannini,M.,
            Maciorowski,Z., Fischer,A., Gessler,M., Charnay,P. and Topilko,P.
  TITLE     Novel features of boundary cap cells revealed by the analysis of
            newly identified molecular markers
  JOURNAL   Glia 57 (13), 1450-1457 (2009)
   PUBMED   19243017
REFERENCE   2  (bases 1 to 3392)
  AUTHORS   Oda,T., Fukuda,A., Hagiwara,H., Masuho,Y., Muramatsu,M.A.,
            Hisatake,K. and Yamashita,T.
  TITLE     ABT1-associated protein (ABTAP), a novel nuclear protein conserved
            from yeast to mammals, represses transcriptional activation by ABT1
  JOURNAL   J Cell Biochem 93 (4), 788-806 (2004)
   PUBMED   15660422
  REMARK    GeneRIF: The Rattus rattus ABT1-associated protein formed a complex
            with ABT1 and suppressed activation of Pol II-directed
            transcription in mammalian cells. It binds and negatively regulates
            ABT1.
REFERENCE   3  (bases 1 to 3392)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   4  (bases 1 to 3392)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
REFERENCE   5  (bases 1 to 3392)
  AUTHORS   Sasaki,N., Nagaoka,S., Itoh,M., Izawa,M., Konno,H., Carninci,P.,
            Yoshiki,A., Kusakabe,M., Moriuchi,T., Muramatsu,M., Okazaki,Y. and
            Hayashizaki,Y.
  TITLE     Characterization of gene expression in mouse blastocyst using
            single-pass sequencing of 3995 clones
  JOURNAL   Genomics 49 (2), 167-179 (1998)
   PUBMED   9598303
  REMARK    Erratum:[Genomics 1998 Dec 15;54(3):583]
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AL844528.13,
            BX294004.4 and AL929001.7.
            
            [WARNING] On Oct 26, 2024 this sequence was replaced by
            NM_001081090.2.
            
            On Feb 6, 2007 this sequence version replaced XM_130548.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1660817.300701.1, BC150893.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164138 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-82                AL844528.13        42390-42471         c
            83-766              AL844528.13        39685-40368         c
            767-1140            AL844528.13        36122-36495         c
            1141-1254           AL844528.13        32296-32409         c
            1255-1355           AL844528.13        31607-31707         c
            1356-1508           AL844528.13        30393-30545         c
            1509-1623           AL844528.13        28968-29082         c
            1624-1771           AL844528.13        26707-26854         c
            1772-1933           AL844528.13        20666-20827         c
            1934-2055           AL844528.13        10846-10967         c
            2056-2143           BX294004.4         2784-2871           c
            2144-2220           AL929001.7         144239-144315       c
            2221-2367           AL929001.7         142842-142988       c
            2368-3392           AL929001.7         139192-140216       c
FEATURES             Location/Qualifiers
     source          1..3392
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 69.2 cM"
     gene            1..3392
                     /gene="Esf1"
                     /gene_synonym="2610101J03Rik; ABTAP"
                     /note="ESF1 nucleolar pre-rRNA processing protein homolog"
                     /db_xref="GeneID:66580"
                     /db_xref="MGI:MGI:1913830"
     exon            1..82
                     /gene="Esf1"
                     /gene_synonym="2610101J03Rik; ABTAP"
                     /inference="alignment:Splign:2.1.0"
     exon            83..766
                     /gene="Esf1"
                     /gene_synonym="2610101J03Rik; ABTAP"
                     /inference="alignment:Splign:2.1.0"
     CDS             124..2661
                     /gene="Esf1"
                     /gene_synonym="2610101J03Rik; ABTAP"
                     /note="ABT1-associated protein"
                     /codon_start=1
                     /product="ESF1 homolog"
                     /protein_id="NP_001074559.1"
                     /db_xref="CCDS:CCDS38250.1"
                     /db_xref="GeneID:66580"
                     /db_xref="MGI:MGI:1913830"
                     /translation="MSSKQEIMDDQRFRRVSKDPRFWEMPEKERKVKIDKRFRAMFHD
                     KKFKLNYAVDKRGRPISHSTTEDLKRFYDLSDSDSDLSDEESKILSQKKAKQKKKQTK
                     KEAKSIEKPIEEKKKETKKTDQKDSINKHDLNNSERVQKMKNSQKPQKIDSEISPKKD
                     NEEFLQNKKKKRGTTDLSVEALPKGKLRTKDSSTSEMVKSSTMSSSKAKREKQSVVPV
                     IMAKDNDGKMPDEDALEEDSDSASELGSDEESEDEIISDGKTSADEDESEEEDEEEEE
                     DSEEEEEEEEEDESDSGPDLARGKGNVETSSEDEDDLADLFPEEPGFEHAWRELDKDA
                     PRADEITRRLAVCNMDWDRLKAKDLLALFNSFKPKGGVVFSVKIYPSEFGKERMKEEQ
                     VQGPVELLSIPEDAPEKDWASREKLRDYQFKRLKYYYAVAECDSPETASKIYEDCDGL
                     EFESSCSFIDLRFIPDDITFDDEPKDVALEVDLTAYKPKYFTSAAMGTSTVEITWDET
                     DHERITTLNRKFKKDELLDMDFQAYLASSSEDEEEVEEAPEGEEGVNIGEDGKTKKSQ
                     KDDEEQIAKYRQLLQVIQEKEKKGKENDMEMEIKWVPGLKESAEEMVKNKLEGKDKLT
                     PWEQFLEKKKEKKRLKKKQKALAEEDSEDELPSDVDFNDPYFAEEVKKIGIKKKSMKS
                     AKDSASSEEETDLEKQKAEMALLVMDEEEDSKKHFNYDKIVEHQNLSKKKKKQLMKKK
                     ELVEDDFEVNVSDARFQAMYTSHLFNLDPSDPNFKKTKAMEKILEEKARHRERKEELL
                     IQAVERAQQDTGKPTQKQPMDPALSMLIKSVKNKTEQFQARKKQRVK"
     exon            767..1140
                     /gene="Esf1"
                     /gene_synonym="2610101J03Rik; ABTAP"
                     /inference="alignment:Splign:2.1.0"
     exon            1141..1254
                     /gene="Esf1"
                     /gene_synonym="2610101J03Rik; ABTAP"
                     /inference="alignment:Splign:2.1.0"
     exon            1255..1355
                     /gene="Esf1"
                     /gene_synonym="2610101J03Rik; ABTAP"
                     /inference="alignment:Splign:2.1.0"
     exon            1356..1508
                     /gene="Esf1"
                     /gene_synonym="2610101J03Rik; ABTAP"
                     /inference="alignment:Splign:2.1.0"
     exon            1509..1623
                     /gene="Esf1"
                     /gene_synonym="2610101J03Rik; ABTAP"
                     /inference="alignment:Splign:2.1.0"
     exon            1624..1771
                     /gene="Esf1"
                     /gene_synonym="2610101J03Rik; ABTAP"
                     /inference="alignment:Splign:2.1.0"
     exon            1772..1933
                     /gene="Esf1"
                     /gene_synonym="2610101J03Rik; ABTAP"
                     /inference="alignment:Splign:2.1.0"
     exon            1934..2055
                     /gene="Esf1"
                     /gene_synonym="2610101J03Rik; ABTAP"
                     /inference="alignment:Splign:2.1.0"
     exon            2056..2143
                     /gene="Esf1"
                     /gene_synonym="2610101J03Rik; ABTAP"
                     /inference="alignment:Splign:2.1.0"
     exon            2144..2220
                     /gene="Esf1"
                     /gene_synonym="2610101J03Rik; ABTAP"
                     /inference="alignment:Splign:2.1.0"
     exon            2221..2367
                     /gene="Esf1"
                     /gene_synonym="2610101J03Rik; ABTAP"
                     /inference="alignment:Splign:2.1.0"
     exon            2368..3392
                     /gene="Esf1"
                     /gene_synonym="2610101J03Rik; ABTAP"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3370..3375
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Esf1"
                     /gene_synonym="2610101J03Rik; ABTAP"
                     /note="hexamer: AATAAA"
     polyA_site      3390
                     /gene="Esf1"
                     /gene_synonym="2610101J03Rik; ABTAP"
                     /note="major polyA site"
ORIGIN      
        1 gcgctccatg tgaactcaga ctgggatctg agaagagtgg tgggaaactg tgcggtcgcc
       61 cgtcgggctc tccttgggat tttatttggt ttctctggat atttcttcat taagacttta
      121 aaaatgtcat ccaaacaaga aataatggat gaccagcggt tcaggcgggt ttcaaaggat
      181 cccagatttt gggaaatgcc agaaaaggaa cgaaaagtca aaattgacaa gaggtttcga
      241 gccatgttcc atgataaaaa gtttaaattg aactatgctg ttgataaaag aggtcgtcct
      301 atcagtcaca gcactacaga agacttgaag cgcttctatg acctttcaga ctctgattct
      361 gatctctctg atgaagaaag caaaatactc agtcagaaga aagcgaagca gaaaaaaaaa
      421 cagaccaaaa aagaagcaaa gtcaattgaa aagccgattg aagagaaaaa aaaagaaacc
      481 aagaaaactg accaaaagga ttctataaat aaacatgact taaataattc tgaaagagtt
      541 cagaaaatga aaaactcaca gaaacctcag aagatagatt cagaaataag tcccaagaag
      601 gataatgaag aatttctaca aaataaaaaa aagaaaaggg gtaccactga ccttagtgta
      661 gaagctttgc ccaaaggaaa gctaaggacc aaagattcca gtacctctga aatggtgaaa
      721 tcttcaacaa tgagttcttc taaggcaaag agagaaaagc aatcagtggt tccagtcata
      781 atggcaaaag acaatgatgg taaaatgcct gacgaagatg ccctggagga ggattcagat
      841 agtgctagtg agctaggaag tgatgaggaa tctgaagatg aaatcataag tgatggtaaa
      901 acctcagctg atgaggatga aagtgaagaa gaagacgaag aagaagagga agatagtgag
      961 gaggaagaag aggaggagga ggaggatgaa agtgacagtg gtcctgatct tgcaaggggt
     1021 aaaggaaatg tagaaactag ttctgaagat gaagatgatt tggcagattt gtttcccgaa
     1081 gaacctggtt ttgaacatgc ttggagagag ttagataaag acgctcctcg ggctgatgag
     1141 attacacgtc gactagcagt ttgtaacatg gactgggata gattaaaggc gaaagatttg
     1201 ctggctctgt tcaactcatt taagcccaaa ggaggagttg tattttctgt gaagatatat
     1261 ccttcagagt ttggaaagga gaggatgaag gaagagcaag ttcaaggacc agtagagtta
     1321 ctaagtattc cggaggatgc ccctgaaaag gactgggcct ctagagagaa gctaagagac
     1381 taccagttca aacgattgaa atactattat gcagtagcgg agtgtgattc tcctgaaaca
     1441 gcaagtaaga tttatgaaga ttgtgatggc ctggaatttg aaagcagttg ttctttcata
     1501 gacttaagat ttataccaga tgatattacc tttgatgatg agcccaagga tgtggcctta
     1561 gaagttgatt taacggcata taagccaaag tatttcacat ctgctgcaat gggaacatca
     1621 acggtggaga tcacttggga tgagactgac catgaaagaa tcacgacgct taacaggaag
     1681 tttaaaaagg atgagctttt ggacatggac tttcaagcct acttggcttc ctctagcgag
     1741 gatgaagagg aggtagaaga agcaccagaa ggtgaagaag gagtcaacat aggagaagat
     1801 gggaagacaa agaaaagtca gaaggatgat gaagaacaaa ttgctaaata cagacagctc
     1861 ttgcaggtta ttcaagaaaa agaaaagaaa ggaaaagaaa atgatatgga aatggaaatc
     1921 aaatgggttc caggtcttaa ggagagtgca gaagagatgg tcaaaaacaa gttggaggga
     1981 aaggataaac tgaccccttg ggaacagttt ttagagaaga agaaagagaa gaaaagactg
     2041 aaaaagaaac agaaggctct tgctgaagaa gacagtgaag atgagcttcc ttctgatgtt
     2101 gatttcaatg atccctactt tgctgaagaa gtaaaaaaaa taggtataaa gaaaaaatca
     2161 atgaaatctg caaaagacag cgcatcttca gaggaagaaa ctgatctgga aaaacaaaag
     2221 gctgagatgg ctttacttgt aatggatgag gaagaggaca gcaagaaaca cttcaattat
     2281 gacaagattg tggagcacca gaatctgagc aaaaagaaga agaaacagct catgaaaaag
     2341 aaggagttag ttgaggatga ctttgaggta aatgtcagtg atgctcggtt tcaggcaatg
     2401 tatacttccc acctgttcaa tttggatccc tctgatccta atttcaagaa aacaaaagct
     2461 atggaaaaaa ttctggagga gaaagctcgg catcgagaac ggaaggaaga acttcttatt
     2521 caagcagtag agagagcaca gcaggacacg ggaaagccaa cacagaagca acccatggat
     2581 cccgccttgt ccatgctgat taaatctgtg aaaaacaaaa cagagcagtt ccaagccaga
     2641 aaaaaacaga gggtcaaata actgctctcg cctcaagtgt acagaaacag tgtaaaggat
     2701 agtgggaaga acgccacctt tctgaaatag gagaaatacc cttttttgac cattgtaaac
     2761 ttgttctgct ttggggctgg agagatggct cagcaataaa gaatactggt gcttttgcag
     2821 agcatccgtg tttggttccc agctctcaca aggcagctca cagccatatg taatttgaga
     2881 gacccggtgc cttttcctgg cctccatggg catggctggc ccatagtgtt tgcataaaca
     2941 tagttacagg caaaatattc acacacagaa aattttaaag taaaatttag aaaaaatgtt
     3001 ccccttatgt aattgtttac ctaattgtaa atacttcatg ttttatactg tgtattcata
     3061 gacttgccat aatgtaatta tatatactat agaattctta agaattttat attatatgaa
     3121 gttcatttca tataagtaca gttattcaag cttcctaaga tgctatttac aatctatgta
     3181 aaatagtgtc aattttttct ctgtaaagaa taaaaacaag ttgaaaatat gtatatgtag
     3241 taccttaatc tctgaaggca ggaagcagat ctctgaagct agtaaaataa tttatttttc
     3301 tagtgtgaaa gatggaagct gtgaactttc tttctgtgct tagtaatttg catgtagaac
     3361 taatttataa ataaaaagtg tgaaatgaaa tt
//
