LOCUS       NM_001166206            3378 bp    mRNA    linear   ROD 19-NOV-2024
DEFINITION  Mus musculus endogenous retroviral sequence 3 (Erv3), mRNA.
ACCESSION   NM_001166206
VERSION     NM_001166206.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3378)
  AUTHORS   Moreno-Moya,J.M., Franchi,N.A., Martinez-Escribano,S.,
            Martinez-Conejero,J.A., Bocca,S., Oehninger,S. and Horcajadas,J.A.
  TITLE     Transcriptome of early embryonic invasion at implantation sites in
            a murine model
  JOURNAL   Reprod Fertil Dev (2015) In press
   PUBMED   25940376
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3378)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   3  (bases 1 to 3378)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL833794.9.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK005451.1, BY705656.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-329               AL833794.9         57512-57840         c
            330-3378            AL833794.9         51771-54819         c
FEATURES             Location/Qualifiers
     source          1..3378
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 64.02 cM"
     gene            1..3378
                     /gene="Erv3"
                     /gene_synonym="1600014E20Rik"
                     /note="endogenous retroviral sequence 3"
                     /db_xref="GeneID:71995"
                     /db_xref="MGI:MGI:1919245"
     exon            1..329
                     /gene="Erv3"
                     /gene_synonym="1600014E20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            330..3378
                     /gene="Erv3"
                     /gene_synonym="1600014E20Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             619..1221
                     /gene="Erv3"
                     /gene_synonym="1600014E20Rik"
                     /codon_start=1
                     /product="endogenous retroviral sequence 3 precursor"
                     /protein_id="NP_001159678.1"
                     /db_xref="CCDS:CCDS50726.1"
                     /db_xref="GeneID:71995"
                     /db_xref="MGI:MGI:1919245"
                     /translation="MGFNLRMLFCLAIFPYVLSSNLISKPQGSQGPKQTRPSPKAWKF
                     QVIAIENQNKTIASTFCLVTGCASTISLTFDIRDTCQGKCIHEPYNAMTSPIYICFVY
                     EQTRSDCKDPNYGGCPHWGCKYHSTWPRWGGERPSRLNSVDWHTKVMYSIPDPWNDRW
                     RIGVEGHIYRHNERDTGYDKKTKILIFRGLDRFPSPNSSG"
     regulatory      3354..3359
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Erv3"
                     /gene_synonym="1600014E20Rik"
                     /note="hexamer: AATAAA"
     polyA_site      3378
                     /gene="Erv3"
                     /gene_synonym="1600014E20Rik"
                     /note="major polyA site"
ORIGIN      
        1 acacactttg agaatcccaa gtctccggtg tgtagctggc cagtatctaa taaaggtcca
       61 gaacatcagg agactccacg gagatccagg cgttcagccc gattcacgtt ctttgctgat
      121 cagccttgat cccagggctt tcggtgtact gagagccaag acttttctca agccgaagga
      181 gccaccagcc ctcagcacct agattccact gaggagtctg gtcttctgga agctgagaac
      241 atttggataa acctaacatt tagaggtggc cgtcgacagg ttctccatgc ctggattgta
      301 gaagagtggc atcgggagcc ctctcagagg ctcatcagct gactcaggac actgtgacct
      361 cttcagttaa ggctgctttc agaggtccac tgctttaatg catccttccc aggatcaaga
      421 gacactgagc tgagacgctg ggaccctgct agacgagacc accacatcat cctgaccacc
      481 cctgtgctgt caaagtagac ggagtctgca cctggataca tcactctcag atcaagtgtg
      541 ccactgggaa caagatctag ttaaagaaaa gtggactgtc accaaaactt gcaaagatcc
      601 actaaaaata agggtaccat gggttttaac ctaaggatgc tgttttgtct ggctatattt
      661 ccttatgttc tttcctcgaa tctaatttca aaaccccaag gttctcaggg tcctaaacag
      721 accagaccat cccctaaggc atggaagttc caggtaattg ccatagaaaa tcagaacaag
      781 accatagcct ctaccttctg tctggtgaca ggatgtgcta gtactataag cctcaccttt
      841 gatataaggg acacctgcca agggaaatgt atacatgaac cctacaatgc tatgacctct
      901 cctatatata tttgtttcgt atatgagcaa actcgctcag actgtaagga cccaaattat
      961 ggaggatgtc cacactgggg ctgcaaatat catagtactt ggcccagatg gggaggagaa
     1021 aggccatcca gactcaactc ggttgattgg catactaagg tcatgtattc gatccctgac
     1081 ccctggaatg acagatggag aataggggtt gagggtcata tctacagaca taatgagagg
     1141 gatacaggct atgacaagaa gactaagata ctcatcttta gaggtttaga cagatttcca
     1201 tctccaaatt cctcgggttg aatgctataa ccaaaccagg tgctataccc gctcctggcc
     1261 ctgatggtga ggtcactggc tgacatcact ttgtattacc accacctttc tctctcgctt
     1321 cctactaacc ctacttctct gaccgccttt gagttgctaa tggcatgttg atatccgtat
     1381 acttgctcat gaatgtttct aacccaagtg ctatgcctga tcgttggtcc tgaaccctac
     1441 aaaactctcg cactgtgtag gactcactgt atactagaag ctcattcggc cactcccttt
     1501 gccagttgtt catgggtgta tctttccact caagcatcaa atctcttcac ataggccaaa
     1561 tccaagttgg ggggacctgt ttctcctcaa agagctatga tgtatctaaa tcccccttta
     1621 agaataaatg aaggctctcc ataaacattt ctcagttcct cgcaacactt tgtcaagtgc
     1681 tcctccctcc ctctcttctt tcctccctcc ctttctcctt tcctccctcc ctctcttctt
     1741 tcctccctcc ctcctttgct tccttccttc cttccttctt tccttcctcc ctccatcatt
     1801 tcctccccct ttcctccctc ctttgcctcc ttccttcctt ccttccttcc ttccttcctt
     1861 ccttccttcc ttccttcctt ccttccttct ttccttcctc cctccatcat ttcctccccc
     1921 ctttctcctt cctttgcctc cttccttcct tccttccttc cttccttcct tccttccttc
     1981 cttctttcct tcctccctcc atcatttcct cctccctttc tccctccttt gcctccttgc
     2041 ttccttcctt ccttcctttt ttccttcctc cctccatcat ttcctccccc ctttcctccc
     2101 tcctttgcct ccttccttcc ttccttcctt ccttccttcc ttccttcctt ccttccttcc
     2161 ttccccaccc agcagaaact ggctccccag tactgatgac atgtacccat gcttgcctat
     2221 ctggcatatg cacaagcccc cgaattctgt accttggtat tcctgttccc ctgaagatgt
     2281 atttatgatg acggtccagc aggaaagagt acttgtattc acagaccctg ccaatcccct
     2341 cagtccagga taaaaaagcc aactgtgcaa ttcacctcct catagctcgc ttaatcccct
     2401 cagggttagt aaggcaggag ctgctagtgg taccacagga acagcaatgg ctgacattaa
     2461 cttcaaaacc atagaacatc aaacaacccc aagatctgcc cgcattagaa aaatctattg
     2521 ccaagctaga aaagcaggtg gagtcattag ctgaggtggt tccatgcaga gcaaggaggg
     2581 ctttagggga gaattgttgc tcataggcaa accactcagg aaccattaaa gatagcttgg
     2641 ctatgctctg gaaaaacttt gcagaaaggg ggaaacaaat ggttcctgtt ctcatgctga
     2701 ggctcctcct ggctcagtcc ctccaggtaa ctctgccatc agctacactt ccctctcctg
     2761 tttctgctga ttgctgttgg accctgcatc agtaatgcct taaccagata cataaattca
     2821 cacttcagtg ctactaaagt aatggttatt ttgtcccaac atgaacaggc acccaccacc
     2881 aagtcaaggg tttgactcag aactcaaccc caggggagaa tgtgacaatg attaacactg
     2941 tgtttaaaat ccataaatgg ctgtgctgtt ctagcttgtg agtttttgta aagtgtacct
     3001 tgtcagctaa cttacccaag atggatgagt tcttggaata gttgggctat tttcaaaact
     3061 gcccgatcga gtaaaaatgt tgaacgatta tgctgttctg acaagataat ggtcacaagg
     3121 ttaaccatgg gttctgcttc tgtctgaaaa atgcttgctt gatcaagata attaaggtgt
     3181 ctgcaagcta tctgttataa acattaagct ctgcttgcat gtaggcaggg atgtgataac
     3241 tcatccctca aactgtaacc tggttggttt tgtctttaca aatcccagac taacaatagc
     3301 tggtgacaca ctttgagaat cccgagtctc agctgtggcc ctgaccagta tctaataaag
     3361 cctctttgtt aaaatcca
//
