LOCUS       NM_026170               2734 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus endoplasmic reticulum-golgi intermediate compartment 1
            (Ergic1), mRNA.
ACCESSION   NM_026170
VERSION     NM_026170.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2734)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2734)
  AUTHORS   Okazaki,N., F-Kikuno,R., Ohara,R., Inamoto,S., Koseki,H.,
            Hiraoka,S., Saga,Y., Seino,S., Nishimura,M., Kaisho,T., Hoshino,K.,
            Kitamura,H., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: IV. The complete nucleotide sequences of 500 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 11 (3), 205-218 (2004)
   PUBMED   15368895
REFERENCE   3  (bases 1 to 2734)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC122252.4 and
            CT025550.11.
            
            On Nov 17, 2006 this sequence version replaced NM_026170.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC005516.1, AK173123.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-121               AC122252.4         81271-81391         c
            122-183             AC122252.4         34249-34310         c
            184-256             AC122252.4         28475-28547         c
            257-351             AC122252.4         18219-18313         c
            352-476             AC122252.4         13224-13348         c
            477-581             AC122252.4         8382-8486           c
            582-642             AC122252.4         6857-6917           c
            643-743             AC122252.4         4060-4160           c
            744-866             AC122252.4         1199-1321           c
            867-2734            CT025550.11        32674-34541
FEATURES             Location/Qualifiers
     source          1..2734
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 13.34 cM"
     gene            1..2734
                     /gene="Ergic1"
                     /gene_synonym="1200007D18Rik; maa-136"
                     /note="endoplasmic reticulum-golgi intermediate
                     compartment 1"
                     /db_xref="GeneID:67458"
                     /db_xref="MGI:MGI:1914708"
     exon            1..121
                     /gene="Ergic1"
                     /gene_synonym="1200007D18Rik; maa-136"
                     /inference="alignment:Splign:2.1.0"
     CDS             102..974
                     /gene="Ergic1"
                     /gene_synonym="1200007D18Rik; maa-136"
                     /note="ERGIC-32; ER-Golgi intermediate compartment 32 kDa
                     protein; endoplasmic reticulum-golgi intermediate
                     compartment (ERGIC) 1"
                     /codon_start=1
                     /product="endoplasmic reticulum-Golgi intermediate
                     compartment protein 1"
                     /protein_id="NP_080446.1"
                     /db_xref="CCDS:CCDS28553.1"
                     /db_xref="GeneID:67458"
                     /db_xref="MGI:MGI:1914708"
                     /translation="MPFDFRRFDIYRKVPKDLTQPTYTGAIISICCCLFILFLFLSEL
                     TGFITTEVVNELYVDDPDKDSGGKIDVSLNISLPNLHCELVGLDIQDEMGRHEVGHID
                     NSMKIPLNNGAGCRFEGQFSINKVPGNFHVSTHSATAQPQNPDMTHTIHKLSFGDTLQ
                     VQNVHGAFNALGGADRLTSNPLASHDYILKIVPTVYEDKSGKQRYSYQYTVANKEYVA
                     YSHTGRIIPAIWFRYDLSPITVKYTERRQPLYRFITTICAIIGGTFTVAGILDSCIFT
                     ASEAWKKIQLGKIH"
     exon            122..183
                     /gene="Ergic1"
                     /gene_synonym="1200007D18Rik; maa-136"
                     /inference="alignment:Splign:2.1.0"
     exon            184..256
                     /gene="Ergic1"
                     /gene_synonym="1200007D18Rik; maa-136"
                     /inference="alignment:Splign:2.1.0"
     exon            257..351
                     /gene="Ergic1"
                     /gene_synonym="1200007D18Rik; maa-136"
                     /inference="alignment:Splign:2.1.0"
     exon            352..476
                     /gene="Ergic1"
                     /gene_synonym="1200007D18Rik; maa-136"
                     /inference="alignment:Splign:2.1.0"
     exon            477..581
                     /gene="Ergic1"
                     /gene_synonym="1200007D18Rik; maa-136"
                     /inference="alignment:Splign:2.1.0"
     exon            582..642
                     /gene="Ergic1"
                     /gene_synonym="1200007D18Rik; maa-136"
                     /inference="alignment:Splign:2.1.0"
     exon            643..743
                     /gene="Ergic1"
                     /gene_synonym="1200007D18Rik; maa-136"
                     /inference="alignment:Splign:2.1.0"
     exon            744..866
                     /gene="Ergic1"
                     /gene_synonym="1200007D18Rik; maa-136"
                     /inference="alignment:Splign:2.1.0"
     exon            867..2734
                     /gene="Ergic1"
                     /gene_synonym="1200007D18Rik; maa-136"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1132..1137
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ergic1"
                     /gene_synonym="1200007D18Rik; maa-136"
                     /note="hexamer: GATAAA"
     polyA_site      1152
                     /gene="Ergic1"
                     /gene_synonym="1200007D18Rik; maa-136"
     regulatory      2712..2717
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ergic1"
                     /gene_synonym="1200007D18Rik; maa-136"
                     /note="hexamer: ATTAAA"
     polyA_site      2734
                     /gene="Ergic1"
                     /gene_synonym="1200007D18Rik; maa-136"
                     /note="major polyA site"
ORIGIN      
        1 ggcgggggcg gggcggccga ggaggcgttg gcagcgggct cggacccacg cggcgctgcg
       61 gcccgcctgg cctgcaacgc tcccaccggc tcggcggcac gatgcccttt gacttcagga
      121 ggtttgacat ctacaggaag gtgcccaagg acctcacaca gccgacatat actggtgcca
      181 ttatctccat ctgctgctgc ctcttcatcc tcttcctctt cctgtcggag ctcactggat
      241 tcatcacaac agaagtggtg aatgagctct acgtcgatga cccagacaag gacagcggag
      301 gcaaaattga cgtcagtctc aacatcagtt tacccaattt gcactgtgaa ttggtcgggc
      361 ttgacatcca agatgagatg ggcagacacg aagtgggcca catcgacaat tccatgaaga
      421 tcccgctgaa taatggagcc ggctgccgct tcgagggcca gttcagcatc aacaaggttc
      481 ccggcaactt ccatgtgtcc acacacagtg ccacagcgca gccacagaac ccggacatga
      541 cacataccat ccataaactc tcctttgggg atacgctaca ggtccagaat gttcacgggg
      601 ctttcaatgc tcttggggga gcagacagac tcacctccaa ccccctggcc tcccatgact
      661 acatcttgaa gattgtaccc acagtgtatg aggacaagag cggcaagcag cgctactcct
      721 accagtacac agtggccaac aaggagtacg ttgcctacag ccacacggga cgcattatcc
      781 ctgccatctg gttccgctat gacctcagcc ccatcacagt caagtacaca gagagaagac
      841 aacccctgta caggttcatc accacaatct gtgccatcat cggcggaacc ttcactgtcg
      901 ccggcattct ggactcctgt atcttcacag cctcagaagc gtggaagaag atccagctgg
      961 gcaaaattca ctgacgtcct gtccagccca gtgactgagg accaggaacc ctgctagccc
     1021 tgcctctggc gtcctatctc cttctgcctt ctctggccca gtgtgtgtgg gaggagggtg
     1081 atggttatgg gtggcaccag gttccccagc tacctctctc cccatgtttt agataaatta
     1141 acactgcctg gagtcacgtg tctctttccc tgcagagccc caagaccagg gtcaggcatg
     1201 gggaggtact ccagggatgc cggtgacctc tctgggaagg ctgtagtcta ttctctgtta
     1261 gggaataact tagagtacaa acagataagc tttcagacag gctttgacaa tctttaagcc
     1321 cccatcattt ggacatgcta atagcttgat ttgtcccccg ggcagccaac ctgtgctctc
     1381 agcctcggga ccagactgcc caaaggtact gctgcttggc gctctcagta tggaatggta
     1441 cttggcaggg acacccatag gcccggcact gcagctggaa cttgcttctg cctcattgct
     1501 tcatgcccga cctagagccc ggggcttgtc tcctacccca gccctgcctc ctcctccggg
     1561 cagatgccag attgcttgac agaacggtgg agactcggat ttgcccacca gtcctgaggc
     1621 agctcacggg tgccccttcc tctcttgtct ttgcttttct gaatccccca ccaatgtgcc
     1681 tcagctgctg tgctatgcgg caatagcatt tcttggtgaa ggggctggtt cccattgcaa
     1741 agcccccctc cccccaacag ttacattctg cagtgccaag ggatagggcc atgtgactgg
     1801 aaggtcatcc ttggaagacc atataaggca cagtttgtac acttctgtcc aaaccagaag
     1861 catccttccc aatgaaccac aaatgatcat gtctgacatc cacctttggt cccaaggcct
     1921 tagctgggga aatgaagcag gcttctcttt ccatccctac cttgcagggt cccaaaagat
     1981 gcccagcatc tggaacccac ttgctattga gaccccctgt tagctgagca catgccaact
     2041 cattcttaga cccagggggc tcccgtgtct cccccacttc ctcctgagtt agatctcttt
     2101 cttgttcccc ctcatccttc ctaaggggag gggcagtggt ctaggtatga attccatgca
     2161 gagaatttta gctatgttct caagtccaga gagagccgcg ggcctgggct tcatttatat
     2221 tgagatggtt tgcatacttt tgtaatgaag gggtacctgc agtaggaagt tttggggttt
     2281 tttgtttttg tttggttttg gttttgtttt tcttaaatag tctcttatgg gtagctggat
     2341 tctctgccat ttgtaatttt tcctctgatt ccaattagca aaacttccct ttttatatga
     2401 gttgattctt attgtgtatg taaactgccc ctggccactt ggctagattt cttatcttct
     2461 tttaaacatt ctgttccaca gtttaagaaa ccagtccctt tggtgtgtga atctgtcacc
     2521 tgtggagggt tgggcagggt gggatgggac gggaactatg tggcatgcgt atgagttgaa
     2581 atcccacttt tgtgaggaca cggtatgcca gtttcccatg gaagagacgc ctctggcctg
     2641 ttgttcttgt aaaggtattc ttaaggggac atatgttttg attctttccc actcactggg
     2701 ttcaattaga tattaaaagg ctgcttttca gaaa
//
