LOCUS       NM_001013608            5584 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus excision repair cross-complementing rodent repair
            deficiency, complementation group 6 like 2 (Ercc6l2), transcript
            variant 1, mRNA.
ACCESSION   NM_001013608 XM_484270
VERSION     NM_001013608.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5584)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 5584)
  AUTHORS   Liu,X., Liu,T., Shang,Y., Dai,P., Zhang,W., Lee,B.J., Huang,M.,
            Yang,D., Wu,Q., Liu,L.D., Zheng,X., Zhou,B.O., Dong,J., Yeap,L.S.,
            Hu,J., Xiao,T., Zha,S., Casellas,R., Liu,X.S. and Meng,F.L.
  TITLE     ERCC6L2 promotes DNA orientation-specific recombination in
            mammalian cells
  JOURNAL   Cell Res 30 (9), 732-744 (2020)
   PUBMED   32355287
  REMARK    GeneRIF: ERCC6L2 promotes DNA orientation-specific recombination in
            mammalian cells.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC154248.2.
            
            On Jan 26, 2022 this sequence version replaced NM_001013608.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR10223971.13467.1,
                                           SRR10223970.16118.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849382
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-214               AC154248.2         52668-52881
            215-639             AC154248.2         56995-57419
            640-759             AC154248.2         62173-62292
            760-953             AC154248.2         71960-72153
            954-1115            AC154248.2         78788-78949
            1116-1323           AC154248.2         79326-79533
            1324-1464           AC154248.2         81910-82050
            1465-1578           AC154248.2         84705-84818
            1579-1698           AC154248.2         86105-86224
            1699-1770           AC154248.2         90315-90386
            1771-1916           AC154248.2         90992-91137
            1917-2012           AC154248.2         95595-95690
            2013-2112           AC154248.2         103322-103421
            2113-2265           AC154248.2         106390-106542
            2266-2346           AC154248.2         108053-108133
            2347-3478           AC154248.2         109160-110291
            3479-3633           AC154248.2         114743-114897
            3634-3815           AC154248.2         132002-132183
            3816-5584           AC154248.2         135898-137666
FEATURES             Location/Qualifiers
     source          1..5584
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 33.1 cM"
     gene            1..5584
                     /gene="Ercc6l2"
                     /gene_synonym="0610007P08Rik; 1700019D06Rik;
                     9330134C04Rik; Rad26l; Sr278"
                     /note="excision repair cross-complementing rodent repair
                     deficiency, complementation group 6 like 2"
                     /db_xref="GeneID:76251"
                     /db_xref="MGI:MGI:1923501"
     exon            1..214
                     /gene="Ercc6l2"
                     /gene_synonym="0610007P08Rik; 1700019D06Rik;
                     9330134C04Rik; Rad26l; Sr278"
                     /inference="alignment:Splign:2.1.0"
     exon            215..639
                     /gene="Ercc6l2"
                     /gene_synonym="0610007P08Rik; 1700019D06Rik;
                     9330134C04Rik; Rad26l; Sr278"
                     /inference="alignment:Splign:2.1.0"
     exon            640..759
                     /gene="Ercc6l2"
                     /gene_synonym="0610007P08Rik; 1700019D06Rik;
                     9330134C04Rik; Rad26l; Sr278"
                     /inference="alignment:Splign:2.1.0"
     exon            760..953
                     /gene="Ercc6l2"
                     /gene_synonym="0610007P08Rik; 1700019D06Rik;
                     9330134C04Rik; Rad26l; Sr278"
                     /inference="alignment:Splign:2.1.0"
     exon            954..1115
                     /gene="Ercc6l2"
                     /gene_synonym="0610007P08Rik; 1700019D06Rik;
                     9330134C04Rik; Rad26l; Sr278"
                     /inference="alignment:Splign:2.1.0"
     exon            1116..1323
                     /gene="Ercc6l2"
                     /gene_synonym="0610007P08Rik; 1700019D06Rik;
                     9330134C04Rik; Rad26l; Sr278"
                     /inference="alignment:Splign:2.1.0"
     exon            1324..1464
                     /gene="Ercc6l2"
                     /gene_synonym="0610007P08Rik; 1700019D06Rik;
                     9330134C04Rik; Rad26l; Sr278"
                     /inference="alignment:Splign:2.1.0"
     exon            1465..1578
                     /gene="Ercc6l2"
                     /gene_synonym="0610007P08Rik; 1700019D06Rik;
                     9330134C04Rik; Rad26l; Sr278"
                     /inference="alignment:Splign:2.1.0"
     exon            1579..1698
                     /gene="Ercc6l2"
                     /gene_synonym="0610007P08Rik; 1700019D06Rik;
                     9330134C04Rik; Rad26l; Sr278"
                     /inference="alignment:Splign:2.1.0"
     exon            1699..1770
                     /gene="Ercc6l2"
                     /gene_synonym="0610007P08Rik; 1700019D06Rik;
                     9330134C04Rik; Rad26l; Sr278"
                     /inference="alignment:Splign:2.1.0"
     exon            1771..1916
                     /gene="Ercc6l2"
                     /gene_synonym="0610007P08Rik; 1700019D06Rik;
                     9330134C04Rik; Rad26l; Sr278"
                     /inference="alignment:Splign:2.1.0"
     exon            1917..2012
                     /gene="Ercc6l2"
                     /gene_synonym="0610007P08Rik; 1700019D06Rik;
                     9330134C04Rik; Rad26l; Sr278"
                     /inference="alignment:Splign:2.1.0"
     exon            2013..2112
                     /gene="Ercc6l2"
                     /gene_synonym="0610007P08Rik; 1700019D06Rik;
                     9330134C04Rik; Rad26l; Sr278"
                     /inference="alignment:Splign:2.1.0"
     exon            2113..2265
                     /gene="Ercc6l2"
                     /gene_synonym="0610007P08Rik; 1700019D06Rik;
                     9330134C04Rik; Rad26l; Sr278"
                     /inference="alignment:Splign:2.1.0"
     exon            2266..2346
                     /gene="Ercc6l2"
                     /gene_synonym="0610007P08Rik; 1700019D06Rik;
                     9330134C04Rik; Rad26l; Sr278"
                     /inference="alignment:Splign:2.1.0"
     exon            2347..3478
                     /gene="Ercc6l2"
                     /gene_synonym="0610007P08Rik; 1700019D06Rik;
                     9330134C04Rik; Rad26l; Sr278"
                     /inference="alignment:Splign:2.1.0"
     exon            3479..3633
                     /gene="Ercc6l2"
                     /gene_synonym="0610007P08Rik; 1700019D06Rik;
                     9330134C04Rik; Rad26l; Sr278"
                     /inference="alignment:Splign:2.1.0"
     exon            3634..3815
                     /gene="Ercc6l2"
                     /gene_synonym="0610007P08Rik; 1700019D06Rik;
                     9330134C04Rik; Rad26l; Sr278"
                     /inference="alignment:Splign:2.1.0"
     exon            3816..5584
                     /gene="Ercc6l2"
                     /gene_synonym="0610007P08Rik; 1700019D06Rik;
                     9330134C04Rik; Rad26l; Sr278"
                     /inference="alignment:Splign:2.1.0"
     regulatory      5560..5565
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ercc6l2"
                     /gene_synonym="0610007P08Rik; 1700019D06Rik;
                     9330134C04Rik; Rad26l; Sr278"
                     /note="hexamer: AATAAA"
     polyA_site      5584
                     /gene="Ercc6l2"
                     /gene_synonym="0610007P08Rik; 1700019D06Rik;
                     9330134C04Rik; Rad26l; Sr278"
                     /note="major polyA site"
ORIGIN      
        1 gggatttacg ggctctggcg agcgttggct ggtcgctgag gtgacgccgc cgcgtcaggc
       61 cccacatagc gccccccgct ccgggcgggc gatgcccggc agccggccca cgtgccgtgc
      121 tctcctcgcc gccgagagcg gcggggctgc cgggtgcctg cccctagccc gatggacatc
      181 tccgccccgc agtcccgcgc agactcccgc aaagacaggt ggtgtccggg agaaagatgt
      241 cttgctccat ctttggataa caaaaagctt tgtgaagcaa gcataaaatc tattactgtg
      301 gatggaaatg ggaaaccttt tgcagttgtc ctgtatccag actttcaaga aaagacaata
      361 cctcttcaaa gacttcaaga agtaaaatca actaaagatt actccagaag tcttatattt
      421 gatgataaag atttagaaaa accttatttc ccagatcgaa aaattccatc tttggctagt
      481 gcttttcaat tatctgaaga tggagactca attccttata ctattaatag gtacttgcga
      541 gattaccaaa gggagggggc tcagttcctc tacagacact acatagaggg gagagggtgt
      601 attcttggtg atgacatggg acttggaaaa acaatacagg ttatttcatt tctggctgca
      661 gttttgcata aaaagggaac tcgtgaagat attgaaaata acatgccaga gtttttacta
      721 aaaagtatga aaaagaagcc gccttctaca gctaaaaaga tgttcttaat agttgctcct
      781 ctttctgtcc tctacaactg gaaggatgaa ttggatacct ggggatattt cagagttact
      841 gttttacacg gtagcaaaaa agacaatgag ctgcttcgtt taaagcagag gaaatgtgaa
      901 attgctctga cgacctatga aacactgcgc ttgtgtctgg aggagcttaa cagtttggaa
      961 tggtcagcta ttattgtaga tgaagctcat agaatcaaga atccaaaagc ccgagttaca
     1021 gaagttatga aggctgtgaa gtgtaaggtc cgcattggcc tcactggtac tgtccttcag
     1081 aacaacatga aggagctgtg gtgtgtcatg gactgggctg tgccaggact tttaggtagc
     1141 aggattcact tcaagaagca attttctgac ccagtggaac atggccagag acacacagca
     1201 acaaaaagag aacttgctac tggccgaaaa gccatgcaca ggcttgcaaa aaagatgtct
     1261 ggctggtttc tcaggcgtac caagactctt atcaagggcc agctgcctaa gaaagaagac
     1321 cggatggtgt attgttcttt gacagacttc cagaaagctg tctaccaaac agtgttagaa
     1381 acagaagatg tggctctgat cctcacatcc tctcagcctt gtacctgtgg cagtggccag
     1441 aagcgcagaa agtgttgtta caagaccaac tcacggggtg acacagtgag aaccttgtgc
     1501 cttagttacc tgactgtgct tcagaaagta gctaaccatg ttgcactgct gcaggctgct
     1561 agcacctcca aacatcagga aacagttatc aagaggatat gtgatcgggt attttccaga
     1621 ttcccagatt ttgtgcagaa aagcaaagat gcagcctttg agacactttc tgaccctaaa
     1681 tatagtggga aaatgaaggt cctccagcag cttttgaatc attttaggaa acaaagagat
     1741 aaggttcttc tcttttcctt ttccaccaag ctgctggatg tgctgcagca gtactgtatg
     1801 gcctcgggcc tcgattaccg gcgactcgat ggaagcacaa agtccgagga aaggctcaag
     1861 attgtgaagg agtttaacag ttcacaagat gtgaacattt gtcttgtctc cacaatggct
     1921 ggtggactag gtctcaattt tgttggggcc aacgttgtta tattatttga tccaacttgg
     1981 aatccagcca acgatcttca agctgttgac agagcgtata ggattggaca gtgtagagac
     2041 gttaaagtgc ttaggctaat atccttgggc acagtggagg agatcatgta cttacgacaa
     2101 gtctacaagc agcaacttca ctgtgtggtg gttggaagtg aaaatgccaa gcgatacttt
     2161 gaagcagtac aaggatcaaa agaacatcga ggagagctct ttggtgtcca caacctcttc
     2221 aaactaaggt cccaagggtc atgtcttacg agagacatcc tggagaggga aggccaagtg
     2281 gaagctggca tcatgacagc cacaacatgg ttgaaagggg aaccttcagc acaagaacta
     2341 gaaacaccta gagaccctga ctgtcaagaa cccacagatg tttgtgagct ctacagcgac
     2401 atcagtgatg aggagtcggt gggccattcc ctgggaaaga ctgataaaca caaattctct
     2461 gacaccagta gaactccagg cttcccagca cagctcactt tgctacaatg tggattctct
     2521 aagttgtttg aggcaaagta taagtcagac caggatggcg atggcaaccc tgtccccagt
     2581 gacggaagtt ctgatgagca gcccatgtgt ctttctgcag aagccagaca ggctgctcgt
     2641 caaaagactt gggactctgt ttgtacttca gaacatcaga aatcagataa catccaaact
     2701 ccagatgaaa aatgtgtttc tgataaaagt gaaaagactt tagaacagaa tgtttcttct
     2761 gaatctgatg atgagacaaa ggatcaccgt acagctggac atcattgcat gggacagggt
     2821 gacacagagt cagaagacag tgatgtcatc tttcccacac agtatcccac tcagagaatc
     2881 cctaagaacc atatacgctt taagctgctg ttaggtgaat ctgaagattc tgaagcagaa
     2941 aaccctgtga aagtaaatca tggtgatgac agacagaaca gtggcagagg gaatggacca
     3001 gttccaaatc tcttgtgtct cgagaacatg acctcaaaat ctgttaggaa aagaaaaggt
     3061 acagatgata ttagcgatga gtctgatgac attgacatgt tccccaagtc aagaataaga
     3121 aagcaaagag ccactacttc cttgaaattt aagagaaaaa aggaaaacaa aaggaaactt
     3181 gataattctc ctgtaacagc aaaggaagca aatcaagtgt gtgcagctga tggagaccgt
     3241 agctctcagg ttattgagga tttttcatcc tcagatgaca atttatctct cagccacttg
     3301 agtttcacta aactaagtca cagagcagaa actgtaaaag ataaaatcag cttgtccccc
     3361 aagctgcctg gcccagataa gaaaaataac acttttatat caagaaaacc accaagcttt
     3421 ctaaatgaag gagttatcag tcaagagcaa atatgcaact caatggataa aatattagat
     3481 ggtgttcagg aagtggctta tatccactca aatcagaatg tgatcggctc aagcagagct
     3541 gagaaccaca tgagccgatg ggcaacgcgt gatgtgtttg agttgaagca gttttcccag
     3601 ctccctgcta atgtagctgt ttgcagttct aagacataca aaactcaggt gaaggcaaac
     3661 atagtgtcac ctacagagaa agatcaacca ccaagtgatg gaggcatttc ctctcctctg
     3721 tacgtatccc accctgtagt ccagaaaaag aaagatgtat atcgtactaa ccatactacc
     3781 ttcatcattg gagaaacacc aagaggaatc cgcagaaagc agtttgaaga aatggcctct
     3841 tactataagc tgcctgtaaa ggagtttgct gaacaagtta ctagggccac atctgaagag
     3901 cgacagaaaa tgctcagaga cttctacagt cttcagcacc cagaggtaaa ggagttcttt
     3961 gtgaattctg cttcagaatt gataaaatct gtccacaaga aagaagagag ggtgaggaat
     4021 aaatctaaag aaaaagaatc tcttttaaaa gaaaacccct caaatgatag tactttatca
     4081 tgttatgatt ccaccaacaa aatgtctcaa gtttacaaca gaaaaatatg tgaaggaaaa
     4141 tcagtcagat ctcagaatca tgttttccat agagaagaca cattttctag tgatgcagag
     4201 attaacaaat cacctgtcag ctttactgaa gagcttcaca gtgagagaaa ggaccacaca
     4261 cccaaggata ccacaacagt cttctgtcca aacagcaact ctgaagccct ggaggcagag
     4321 ctaggaaatt ccccaggacg tcagtgggac ctcacaggag catgcggttc aagaaacaga
     4381 ccacttttca agttgagaaa caaaagggta gaaaacccag ggtcagaaaa cactcctgag
     4441 gatggcttac ttggtgacac ctctattctt aacgacctct ttaaaagcca cggggaaggt
     4501 cccacacagc tgccaaagaa tgttctttca ggacctgtgg caaaagcaaa gcagaaacca
     4561 aaagatttct gggacatctt gaatgagcag aatgatgaca gtctcagcaa actcactgac
     4621 ttggcagtga tagagacgct gtgtaccaaa gcacccagta cctcagcctc caaaaggaaa
     4681 gatgagctgg aagcttccct ttggaaagca aacgagaagt ttttgtggaa gacattaagc
     4741 tcagatgttg acgatgaaag cataagcaat acagagagag agtaggacat ggacgtgcca
     4801 ttaacctaga tattgatgag ctgctggccc tggctatgga tgttcatgta tggggcacac
     4861 tgaacatttg tttacaaact tgtgtattaa attattgctt tagtataatc taaacagcct
     4921 agcatgttat catgggttct ttccctaata tctgttttaa tcattaacgc tcatgtatgt
     4981 agtttatgta gtactggagg tcaagcccag gactttatgc aagcactctg ggcaactgag
     5041 ctacatctcc tgccccagat ttggtcttca gaacaaatgt aattgtatca tattgtaacg
     5101 tgtcataata taactattat taactggcat cttccctcct gtgtgagtcc gtggccttac
     5161 gtgagtgact tgcccattca ttatctgaaa gataaccgac acacagcctt ccacttttaa
     5221 actccagaat gccccaaagt caagtggcag ccactgccct ctcctcattg gcattgggaa
     5281 cttactgttt tccttcttcc ttggaattat gttctattac tattaaatta ttttagataa
     5341 aagttataat gaagactcaa caattaggac tcaatgtatg gcattatgtt aaaaatgcta
     5401 atttttataa tcactcagag tttgtgtgct gtggtctaaa gaaatgggat ttttatcttt
     5461 gcccaggatt ccgatgcctt aacttttcac attactatga tttagtaaat ataaatagat
     5521 ttatagccta actttgtatt tcttaagtaa aaggaaatga ataaacattt gattttaatt
     5581 gaaa
//
