LOCUS       XM_030247859            8420 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus excision repair cross-complementing rodent
            repair deficiency, complementation group 6 (Ercc6), transcript
            variant X5, mRNA.
ACCESSION   XM_030247859
VERSION     XM_030247859.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000080.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8420
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="14"
     gene            1..8420
                     /gene="Ercc6"
                     /gene_synonym="4732403I04; C130058G22Rik; CSB"
                     /note="excision repair cross-complementing rodent repair
                     deficiency, complementation group 6; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     mRNAs, 27 ESTs, 371 long SRA reads, 1 Protein, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 23 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:319955"
                     /db_xref="MGI:MGI:1100494"
     CDS             768..4532
                     /gene="Ercc6"
                     /gene_synonym="4732403I04; C130058G22Rik; CSB"
                     /codon_start=1
                     /product="DNA excision repair protein ERCC-6 isoform X2"
                     /protein_id="XP_030103719.1"
                     /db_xref="GeneID:319955"
                     /db_xref="MGI:MGI:1100494"
                     /translation="MLMPAQETAWEELIRTGQMTPFGTPAPQKQEKKPRKIMLNEASG
                     FEKYLAEQAQLSFERKKQAATKRTAKKAIVISESSRAAIETKADQRSQVLSQTDKRLK
                     KHSRKLQRRALQFQGKVGLPSGKKPLEPEVRPEAEGDTEGEESGSSPTDGEEEEEQEE
                     EEGVASLSSDDVSYELKPLRKRQKYQKKVPVQEIDDDFFPSSEEEDEAMEGRGGGRKV
                     ARRQDDGDEDYYKQRLRRWNRLRLQDKEKRLKLEDDSEESDAEFDEGFKVPGFLFKKL
                     FKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEG
                     LGPTIIVCPTTVMHQWVKEFHTWWPPFRVAVLHETGSYTHKKERLIRDIVYCHGVLIT
                     SYSYIRLMQDDISRHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNN
                     LRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTIN
                     PYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFIDSKAVYRILNGENQIFS
                     GLVALRKICNHPDLFSGGPKNASGPPEDELEEEQFGHWRRSGKMIVVESLLKIWHRQG
                     QRVLLFSQSRQMLHILEVFLRAHKYSYLKMDGTTTIASRQPLITKYNEDTSIFVFLLT
                     TRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEK
                     IYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTLTSPDASQGTETSAIFAGTGSSI
                     QTPKCQLKKRTSTVLGTDPKCKKPPVSDTPANAATLIGEKPKAAGATGRSVTSGESGP
                     FKGDHDTNGNRASSVAFGEETDAGSTLEHLSVMSGDGKHSDSPTVDHTSRPPVEASTS
                     EKQGSSYAGARCQAQTEPVPMSEQMEGQFSKYKSKRKHDASEEETTEKRPQPKQKAKN
                     SKHCRDAKFEGTRVPHLVKKRRYRQQTSEQEGGAKDRSSDDYVLEKLFKKSVGVHSVV
                     RHDAIIDGSSPDYVLVEAEANRVAQDALKALRLSRQQCLGAASGVPTWTGHRGISGAP
                     TGVKNRFGQKRDSSLPVQHPSSLTEKTQNNMKKEGKAHTPEHFSGKEDGASVSGAPSS
                     SSLLARMRARNHMILPERLESDSEHLAEAAAVPPCGTEHDDLLVDMRNFIAFQAQVDG
                     QASTQEILQEFESKLSVAQSCVFRELLRNLCNFHRTPGGEGIWKLKPEYC"
ORIGIN      
        1 attaatatct tttaattcat aaaactagat aacatttgtc aagaatgata caagccgctc
       61 aaatggctac agactgacca cacagtccaa cctagcccag gacaaaggcc acgcgcggct
      121 ccctttggtc aacgcacgtg gcaaaccctt gcttacaaac ggctcagcaa ggcgcaggcg
      181 ccgttggtcc tgcccgcccc cagaggcggt gcttagcaca ggcctagggc gcatgcgcta
      241 aggtttgtct caacgctccg tcgcggcggt agcgacgaag aattcgtttg ggcagccgcg
      301 tggttctggt ttgtagagga tgttccacga ggaagttccc aactccactc accctcagga
      361 gcaagactgt ttaccaagtc agcatgccaa tgcttacaaa gacatgccag ttgggcagga
      421 gaatggtggg gtctcagagg ccggggagtg cctctcctct acttcctgtg agtatgggcc
      481 atccacatct gctgaagctt gtgtgttggc agccacaagg cgtgggccga ccctgctaca
      541 cattgatcgg catcagatcc ctgcagttga gcccagtgct caggccctgg agctgcaggg
      601 cctgggtgtg gacgtctatg accaggctgt cctggaacaa ggcgtgcttc agcaggtgga
      661 cagtgcgatg catgaggcca gctgtgtggc ccagcttgct gatgcggaga aggagtatca
      721 gtcagtcctg gatgacctca tagccagggc catcatgtct tggcagtatg ctcatgcctg
      781 cccaggagac cgcctgggag gagcttatcc gcactggcca gatgacaccg tttggtaccc
      841 cagcccctca gaaacaggag aaaaagccca gaaaaataat gctgaatgaa gcatcaggct
      901 ttgaaaaata tttggcagag caagcacaac tttcgtttga aaggaagaaa caagctgcta
      961 ctaaaagaac agctaaaaaa gctatagtca tatccgagtc aagccgagca gcaattgaaa
     1021 ccaaggcaga ccagagaagc caagtgctct ctcagacaga caagcgcctg aagaagcaca
     1081 gcaggaaact ccagaggagg gcgctgcagt tccagggcaa agtgggattg ccgagcggga
     1141 agaaaccttt ggagcctgag gtgaggccag aggccgaggg agacactgag ggtgaggagt
     1201 ctgggtcctc tcccaccgat ggggaggagg aggaagaaca agaggaggag gaaggggtag
     1261 ccagcctgtc ttctgatgac gttagctatg agctgaagcc tcttcggaag aggcagaaat
     1321 accagaagaa agtcccagtt caggagatcg acgatgactt ctttccaagt tctgaggagg
     1381 aagatgaagc tatggaagga agaggaggag gccgaaaggt agccaggcgc caagacgatg
     1441 gagatgagga ttattataag cagcggttaa ggaggtggaa caggctgagg ctgcaggaca
     1501 aagagaaacg cctgaagctt gaagatgatt ctgaggagag cgatgccgaa tttgacgaag
     1561 gtttcaaagt gccgggtttt ctgttcaaaa agctctttaa gtatcagcag acaggtgtta
     1621 ggtggctgtg ggaattgcac tgccagcagg caggaggaat tctgggagac gaaatgggat
     1681 tgggcaagac catccagata attgccttct tggcaggtct gagctacagc aagatcagga
     1741 ctcgcggttc aaattacagg ttcgagggac taggccccac tataattgtc tgcccaacga
     1801 cagtgatgca tcagtgggtg aaggaattcc acacgtggtg gcctccattc agagtggcag
     1861 ttctgcatga aacaggttcc tacacccaca aaaaggagag gctgattcga gatattgttt
     1921 attgtcatgg agttttgata acttcatatt catacatccg actgatgcaa gatgacatta
     1981 gcagacatga ctggcactac gtcatcttag atgaaggaca caaaattcga aatccaaatg
     2041 ctgcagtcac ccttgcttgc aaacagttcc ggacacctca tcggattatc ttgtctggct
     2101 caccgatgca gaataacctc cgagagctgt ggtcactctt cgacttcatc ttcccaggaa
     2161 agctgggcac attgcctgtg tttatggagc agttctctgt ccccatcacc atgggaggct
     2221 attccaatgc ttccccagta caggttaaaa ctgcttataa gtgtgcatgt gtcttaagag
     2281 acacgataaa cccgtactta ctgcggagaa tgaaatcaga tgtcaagatg agcctttcgt
     2341 tgccagataa aaatgagcag gtcttatttt gccgtctaac tgatgagcag cataaagtct
     2401 accagaattt cattgattct aaagcagtct acaggattct caatggagaa aatcagattt
     2461 tctctggact tgtagcgctg aggaagatct gcaaccaccc tgacctcttt tctggcggcc
     2521 ccaagaacgc cagtggtcct ccagaggatg agctggaaga agagcagttt ggacactgga
     2581 gacgctctgg gaaaatgatt gttgttgagt ctttgctgaa aatatggcac aggcagggtc
     2641 agcgggtgct gctgttttcc cagtccaggc agatgctaca catactggaa gtgttcctga
     2701 gagcccataa gtattcctat ctcaagatgg atgggaccac caccatagcg tcaagacagc
     2761 cgctgattac aaaatacaat gaggacacgt ccatctttgt ctttcttctg accacacggg
     2821 tgggtggctt aggagtgaac ctgaccggtg ccaacagagt catcatctac gacccagact
     2881 ggaatccaag caccgacaca caggcccggg agcgagcatg gaggataggt cagaagaagc
     2941 aggtgactgt ctacaggctt ctgacggctg gcaccattga ggaaaagatc taccaccgac
     3001 aaatcttcaa gcaatttttg acaaacagag tgctaaaaga cccaaaacaa aggcgctttt
     3061 tcaaatccaa cgatctctat gagctgttca ctctgaccag tcctgacgcc tcccagggca
     3121 ctgagacaag tgctattttt gcaggaacgg gctccagtat tcagacaccc aaatgccagt
     3181 taaaaaaaag gacttccaca gtcctgggaa cagatcccaa atgcaagaag ccccctgttt
     3241 ctgacacacc tgcaaatgct gccaccctga ttggagaaaa acctaaggcg gcgggagcta
     3301 caggaagaag tgtcacttct ggagaaagtg gtcctttcaa aggcgaccat gacacaaatg
     3361 ggaacagagc tagcagtgtt gcttttggag aagagacaga tgcagggtcc acactggagc
     3421 atctctcagt gatgagtgga gatgggaagc attcagattc tccaacagtt gaccacacat
     3481 ccaggccacc agtggaggca agcaccagtg agaagcaggg ttcttcctat gcaggggcgc
     3541 gctgccaggc tcagacagaa cctgttccca tgagtgaaca aatggaaggt cagttttcta
     3601 agtacaaatc caaaaggaag catgatgcat ctgaggaaga gaccacagag aaacgtccac
     3661 agcccaagca aaaggccaag aactccaagc attgcagaga tgctaagttt gagggaactc
     3721 gagtcccgca cctggtgaag aaaagacggt accgccagca aaccagtgag caggagggcg
     3781 gagccaagga ccggagcagc gatgattatg tgttggaaaa gcttttcaaa aaatcagtgg
     3841 gcgtgcacag cgtcgtgagg catgatgcca tcatagatgg gtccagtcca gattatgtgc
     3901 tggtggaagc agaagccaac cgagtggctc aggacgcctt gaaagctctg aggctctctc
     3961 gtcagcaatg cctgggggca gcatctggtg ttcccacctg gactggccac agggggattt
     4021 ctggtgcacc aacaggagta aagaataggt tcggtcagaa aagggactcc agcctccctg
     4081 tgcagcatcc ttcatcacta acagaaaaga ctcagaacaa catgaaaaag gagggaaaag
     4141 ctcacacccc tgagcacttc agtggcaaag aagatggagc atctgtgtct ggagcgccca
     4201 gttcctcctc cctcttggcc agaatgcgag caagaaacca catgattttg ccggagcgct
     4261 tagagagtga cagtgaacat cttgctgagg ctgctgccgt gcctccctgc ggcaccgaac
     4321 acgacgacct tctggtggac atgaggaact tcattgcttt ccaggcccag gtggatggcc
     4381 aggccagcac tcaggaaatc ctgcaggagt ttgagtccaa gctgtccgtg gcacagtcct
     4441 gtgtcttccg agaactgctg agaaatctgt gcaatttcca tagaactcct ggtggggaag
     4501 ggatttggaa gctgaagcca gaatactgct aacagtgatg ctctctaaac tctttcagat
     4561 ggaaagcttg gctccccgag cctgtgatta gtgttcgtgg ggtgtgtgtg tgtgtgtgtg
     4621 tgtgtgtgtg cgcgcgcgcg cgcgcgcgtg tgcatgagtg actgtacttg gtatttacta
     4681 tgtcatctac ctcaagacta aaacttgaag aagaaaataa ttggagggtt tttgttttgt
     4741 ttgtttggtg gcactgtgaa ttaagttata aaaccaggga cctaacagtt gtttaatgga
     4801 gcaaatacgt tacttaaccc aaaagatgtt gtcagggagc acacagtatt taagaataca
     4861 tctcggttct tcttactggt gctgggcata tgtcttctct ttatccaccc catcttataa
     4921 gtcacttcac agtatccgat aatcttggta ccttgataca gcatgggttt tctgacccac
     4981 tggttacata cagaaagaca cttgctatct gtcaaatcat taattacata taaataattc
     5041 ttcatagcac ttttagatta gcaggcttgg gttttgttgt ttgtttgttt gtttgtttta
     5101 aatgttgctg aagacagact ctggtgcctt gcacatgctc agtatgtgct ttaccaccaa
     5161 gttccttccc agttcataca tacgtgtcaa agtaggaagt ctggtttttc ttctctgtca
     5221 tcattatcta aagatggcgg atggggtttg tttaaatagg tcagtcagtt ctaaacttta
     5281 gtacttggct cagaaggaag tcacaacacc cgttcgttta tttatttttt gttccagtga
     5341 tcagcctaca ggaaatgcta ttgcccttgt ccttaggctg actaccaacc tgactcacta
     5401 acatgaaaca tttgtgctgt gcctgtgatg tctgagatct aagttatact gagctagaga
     5461 atgtcgtata gacacttttt ttgttttttt ttttcgagac agggtttctc tgtatagtcc
     5521 aggctgtcct ggaactcact ttgtagacca ggctggcctc aaactcagaa atccgcctgc
     5581 ctctgcctcc cgagtgctgg gactaaaggc gtgcgccacc acgcccggct gtatagacag
     5641 tctttaactg tcgaaagtta cctaccacgc ggtcaggaag ggatccgtgt tccacctctg
     5701 ccactgacct gcccagcctg ggaaggttga atctgtaaac atggttatcc agccaagctg
     5761 ggagaagctt agagaccagt tctccaggtt aaagtacttt ttaacaatac acacctttat
     5821 acattgagct gcaatctgat ttctttgaac tttaaatact ttgtgcggta taaatagatt
     5881 taatgtatta aacatattaa ataattacaa ataaaagatt taaaaatact ggtttttcct
     5941 gtattgtcac tgttagaaat ccttcaagca ctcctgcctc cctatcctgt gcattccaga
     6001 gctctgtgca gttgcccagg cattggcatg gctcctggca tgggttactc ctcctctgtg
     6061 tttcccctgg actcatgact gcccagctga aaattgtttc tcagcctccc tgcaggtgtg
     6121 gccccatgac agttccaggc agtgagatgg aagacttcta gcttgaagct tacacagagg
     6181 catggtgtgc atgcccctga aagttccctg gcttgctggt caggatgtct gtgagagcct
     6241 caggcgtctc ctggcatttc aggagagggt ggatggtcta ctagtcaaga acagctatct
     6301 ttgaccagat actttggagt gaaataaatg aagtgttatt taatactgtt ttaacatcta
     6361 attggtgtaa tgtatgtaac acactaatgc tgtaagtttc ctgtgtatct cacgttcgca
     6421 ctatgcaggt cttttcactt atgtacctct gctttcgctg acctgctgat ctccaaaccc
     6481 atcacaggct cactttcctc aggcttgccc acagcaacta gtttccatct tggtacattg
     6541 ttttaaaatt agtcttgttt cataaaataa ccttacttta atttgaattt ccctgattta
     6601 acaccagaca gaataccata ttcacctagt ttcctcagta taaatgaaag acagttatga
     6661 aagaggcaag aacaaaaagc cattctgggc tagtccatca tccgccacca ctccaaatgc
     6721 cagcttcgac tcatcgtagt gcactgcaag gctgacgtca gaccccgtgt ctgtctgttc
     6781 cctcacactc tgcacgctga cgtttgtcac ctgtgggaaa gtccattttc ctttttatct
     6841 cgtcctctgt gtcttatttt tgtgcatttc ctgttccaag caaatgatag aattagctta
     6901 ttagattcca ctgaagtgtt gctcttttgg ccgggattgc attagtttgc ccattaattg
     6961 gaagataata gacttcttta taattaatat aattttccca ttagtattat gagaggccta
     7021 attttattgc ttgggtaaca ttcctcataa gggttcagtt ttatattagc ttcgttctag
     7081 atgttttaca gaatttttgt ttaggatttt aaaggatctt ttactttcac ataaaaaaaa
     7141 aagtggagat gcttgactca ttcctgtgtc acctctgtgt tgcttatcac tggaagcgtt
     7201 tacattcaaa gctgctacat tcagtttttt aatatcctat ggtcatgatg caatcttgtg
     7261 aatggccttg ttagttacaa tgtggtttgg atgggaagtg tcccacctgt agactcacgt
     7321 ctttgaacat gtggttccta gctcatgatg cccttttgga cctcctgatg gctgctatga
     7381 cagactgtgt cacctgtaat gtgagccaaa aatgaaccct tctttcctta ggttcttttg
     7441 tctgggtatt ttgtcagcaa taaggtaaat gactaaatgt aattatacag aaatagatat
     7501 tttcctaaca tttgaaaact gtagatcatt ctctccttcc tgatttatac atttataaag
     7561 ccaccaatcc accattatgt cccatgtcca tataatcatg gaaatgtgcc tgaactctat
     7621 attttgttaa ctttgtccat tcatctttac caataaacca tttttaatca tgtaggtttc
     7681 taattgactg tcaaaaattg tagagcaact cttggatctt tgttatatct tggatatatt
     7741 agatcatctt gtcacattgg gattttgtga ctacaatgaa tgagcagact tgttgaggat
     7801 tatttatgat gctgggtccc gtgcatctct gaataagcca tagctatgta tttttattac
     7861 atgtttataa agaaataatt gtgctatatc tcgcattttg taatagacaa cttacgtatg
     7921 catagataga aaatgtgtat catgcaagca attctatcaa atcttggtga gaacagtgag
     7981 tctgatgtac aacttacgct tagtcccaac cttgattttg tacctgtagt aaaggacacc
     8041 ttctgaaaac ccacgtgttc tcatttatac aggctcgtct cctgcttctc tctacgttgg
     8101 ctttgctaac tgatgttata tgtatcatct agcaactttg ctgaacttgc actctgatct
     8161 gtaaattgtc ctataatact tggatcagct gtaatagtaa cgattgtgtt tcacgtgttc
     8221 caatatgcac acgctctgat acggagtaga aatgattaca ggtggcatag tacttcgcca
     8281 tctctctttc ctgccatcga ggagaagctc taacacctac agttgctgtt tcctaataga
     8341 tggcttagtt gggttaaggg aatattcttt ccagttttaa atccactgct ggatttcatt
     8401 aaatgtttct cctgctttta
//
