LOCUS       NM_026563               2195 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus endosome associated trafficking regulator 1 (Entr1),
            transcript variant 1, mRNA.
ACCESSION   NM_026563
VERSION     NM_026563.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2195)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2195)
  AUTHORS   Yu,F., Sharma,S., Skowronek,A. and Erdmann,K.S.
  TITLE     The serologically defined colon cancer antigen-3 (SDCCAG3) is
            involved in the regulation of ciliogenesis
  JOURNAL   Sci Rep 6, 35399 (2016)
   PUBMED   27767179
  REMARK    GeneRIF: SDCCAG3 has a role in ciliogenesis and in localization of
            cargo to primary cilia
            Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2195)
  AUTHORS   Sakagami,H., Hara,Y. and Fukaya,M.
  TITLE     Interaction of serologically defined colon cancer antigen-3 with
            Arf6 and its predominant expression in the mouse testis
  JOURNAL   Biochem Biophys Res Commun 477 (4), 868-873 (2016)
   PUBMED   27373827
  REMARK    GeneRIF: These findings suggest that SDCCAG3 might function in
            endosomal trafficking downstream of Arf6.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY104480.1, AK014885.1 and AK163690.1.
            
            On Apr 28, 2007 this sequence version replaced NM_026563.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK014885.1, SRR7345562.3849343.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN01164139
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-155               BY104480.1         2-156
            156-644             AK014885.1         125-613
            645-2195            AK163690.1         397-1947
FEATURES             Location/Qualifiers
     source          1..2195
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 18.88 cM"
     gene            1..2195
                     /gene="Entr1"
                     /gene_synonym="C330016H24Rik; C630038K21Rik; Sdccag3"
                     /note="endosome associated trafficking regulator 1"
                     /db_xref="GeneID:68112"
                     /db_xref="MGI:MGI:1915362"
     exon            1..168
                     /gene="Entr1"
                     /gene_synonym="C330016H24Rik; C630038K21Rik; Sdccag3"
                     /inference="alignment:Splign:2.1.0"
     exon            169..318
                     /gene="Entr1"
                     /gene_synonym="C330016H24Rik; C630038K21Rik; Sdccag3"
                     /inference="alignment:Splign:2.1.0"
     exon            319..387
                     /gene="Entr1"
                     /gene_synonym="C330016H24Rik; C630038K21Rik; Sdccag3"
                     /inference="alignment:Splign:2.1.0"
     exon            388..503
                     /gene="Entr1"
                     /gene_synonym="C330016H24Rik; C630038K21Rik; Sdccag3"
                     /inference="alignment:Splign:2.1.0"
     exon            504..911
                     /gene="Entr1"
                     /gene_synonym="C330016H24Rik; C630038K21Rik; Sdccag3"
                     /inference="alignment:Splign:2.1.0"
     exon            912..985
                     /gene="Entr1"
                     /gene_synonym="C330016H24Rik; C630038K21Rik; Sdccag3"
                     /inference="alignment:Splign:2.1.0"
     exon            986..1097
                     /gene="Entr1"
                     /gene_synonym="C330016H24Rik; C630038K21Rik; Sdccag3"
                     /inference="alignment:Splign:2.1.0"
     exon            1098..1160
                     /gene="Entr1"
                     /gene_synonym="C330016H24Rik; C630038K21Rik; Sdccag3"
                     /inference="alignment:Splign:2.1.0"
     exon            1161..1300
                     /gene="Entr1"
                     /gene_synonym="C330016H24Rik; C630038K21Rik; Sdccag3"
                     /inference="alignment:Splign:2.1.0"
     exon            1301..2195
                     /gene="Entr1"
                     /gene_synonym="C330016H24Rik; C630038K21Rik; Sdccag3"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2176..2181
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Entr1"
                     /gene_synonym="C330016H24Rik; C630038K21Rik; Sdccag3"
                     /note="hexamer: AATAAA"
     polyA_site      2193
                     /gene="Entr1"
                     /gene_synonym="C330016H24Rik; C630038K21Rik; Sdccag3"
                     /note="major polyA site"
ORIGIN      
        1 ggcgttcggc gctggcttcc ggcccgccga gccggatgag gcaggggccg gcgactgcct
       61 tgcgggccat ggggccgcgg ccgggttagg gcgcggcgat gtcgggctac gcgcggcggc
      121 agggcgcgcc ccctctatcg cggacgcgga gccttgtggt tcccgacgct cctgcgttct
      181 atgagcgccg gtcttgtctc ccccagctag actgtgagcg cccccatggc ggggacctgc
      241 acccccatct cttcggcttt cggccgacgt ttatgtgcta tgtgcccagc ccggtgctgg
      301 cttcggtagg agacacaggt tttggctatg gaaaggggaa atgtactaac caaggtcctt
      361 cgggagcccc tgagacgcgc tttggaggtg acaaacttga agaccttgaa gaagccaatc
      421 cattctcctt caaagagttt ttgaaaacca agaacctcag cctgtcaaaa gaagacacga
      481 ccaccagccg aatttaccca aaggaagcct caaggcaccc actgggacta gagcacagct
      541 cccctgcctc ccagctcatg ggatatggcc tggaatctca gcagccattt tttgaagacc
      601 caacaagagc cagcaaccta gaggaggatg aagatgatgg atggaatata acctacttgc
      661 catctgccgt ggatcagact cattcctcta gagacacaca ggactcaccg ccctgtgaca
      721 cctacctttc ctttttctcc aactcgtcag agctggcatg tcccgagtct ttgcccccat
      781 ggacgctgag tgacaccgac tccaggatct ccccagcgtc tccagctggg agtcctaatg
      841 cagactttgc agctcatgaa gaatccctag gggacagaca cctgcggacg ctgcagataa
      901 gttatgaagc actgaaagat gaaaactcta agctcagaag aaagctaaat gaggttcaga
      961 gcttctctga aactcaaaca gaaatggtga ggacactcga acggaagttg gaggcgaaga
     1021 tgatcaagga ggagagtgac ttccatgacc tcgagtcagt agtccagcaa gtcgaacaga
     1081 accttgaact gatgaccaaa cgggctgtaa aagcagaaaa tcatgtcttg aagctgaaac
     1141 aggaaataaa tttgcttcag gcccagctct caaacttgag gcgagaaaat gaagccctgc
     1201 ggtcaggcca gggtgccagc ctttctgtag tgaagcagaa caccgacgtg gccttgcaga
     1261 acctccacct tgtcatgaac agtgcacacg catccataaa gcagctggtg tctggggcag
     1321 acacactgaa ccttgttgct gaaatcctca agtctatcga cagaattagt gaagttaaag
     1381 atgaggtgga ctcttgagac gctctacctg ccaccgggtc ccgtcacctc tgcaccgaag
     1441 gcaccacaca tcttccgaat gtgttcctgt ctatgcagtc ctcatcaaag catttcacgg
     1501 cctaatcatg tgactggcca tctgcagtac ggggctcctt tccaccagtt gaacctaaca
     1561 gtttacatga agtcccactg ttcgatagac tcactgattt actggaagac acttttataa
     1621 aaccactaaa gctgaaacga cagttttgta acaagcttct ttcaccaccc tctctaggac
     1681 gaggtcgggc tcagcctcag tgttgtcaag tggaacacga agtgagccag tgtgtaagtg
     1741 agcagcctgt acagagacgc gtgcctcact gaggcagcac cgcttggtac gtgctgccgt
     1801 cctcccacca ggaccatagg accaaggtca cacactgtgc acagtgcaaa gcttcataca
     1861 ccctctactg tgtgctgtca gctttggaaa gccatttggg gctgtcgatt ttgatgcacg
     1921 ttaatgtgtt tgtgtgcctt ttgtatagtg caattcagac tggaattaaa gcacacaccc
     1981 acctgggggg tcagcaccag ctctttgggc tggctggctg gtttttgaag gacaggcaag
     2041 acataagcag ctccctgtgc tgtgctgagg ggtcaaggtt tgggggccac tttcctatag
     2101 gttgtttttt tgtttttttt ttttaattta ttttcccttt tcccctcctg ttgagatcaa
     2161 cagctttctg atctaaataa atcttaaaga tcatt
//
