LOCUS       XM_036152991            9643 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus EMSY, BRCA2-interacting transcriptional
            repressor (Emsy), transcript variant X42, mRNA.
ACCESSION   XM_036152991
VERSION     XM_036152991.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000073.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9643
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="7"
     gene            1..9643
                     /gene="Emsy"
                     /gene_synonym="2210018M11Rik; 2310016L09Rik"
                     /note="EMSY, BRCA2-interacting transcriptional repressor;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 3 mRNAs, 26 ESTs, 1253 long SRA reads, and
                     93% coverage of the annotated genomic feature by RNAseq
                     alignments, including 38 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:233545"
                     /db_xref="MGI:MGI:1924203"
     CDS             3139..6090
                     /gene="Emsy"
                     /gene_synonym="2210018M11Rik; 2310016L09Rik"
                     /codon_start=1
                     /product="BRCA2-interacting transcriptional repressor EMSY
                     isoform X35"
                     /protein_id="XP_036008884.1"
                     /db_xref="GeneID:233545"
                     /db_xref="MGI:MGI:1924203"
                     /translation="MPVVWPTLLDLSRDECKRILRKLELEAYAGVISALRAQGDLTKE
                     KKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGPNSSSEWSIEGRRLVPL
                     MPRLVPQTAFTVTANAVANAAVQHNASLPVPAETASKDGVSCSDEDEKPRKRRRTNSS
                     SSSPVVLKEVPKAVVPVSKTITVPVSGSPKMSNIMQSIANSLPPHMSPVKITFTKPST
                     QTTNTTTQKVIIVTTSPSSTFVPNILSKSHNYAAVTKLVPTSVIASTTQKPPVVITAS
                     QASLVTSSSNGNSSSTSSPISSTVAVTTVVSSTPSVVMSTVAQGVSTSAIKVASTRLP
                     SPKSLVSGPTQILAQFPKQHQQSPKQQLQQVQQQTQQPVAQPSSVSQQQQPQQSALPP
                     GIKPTIQIKQESGVKIITQQVQPSKILPKPVTATLPTSSNSPIMVVSSNGAIMTTKLV
                     TTPTGTQATYTRPTVSPSLGRVATTPGAATYVKTTSGSIITVVPKSLATLGGKIISSN
                     IVSGTTTKITTIPMTSKPNVIVVQKTTGKGTTIQGLPGKNVVTTLLNAGGEKTLQTVP
                     AGAKPAIITATRPITKMIVTQPKGIGSAVQPAAKIIPTKIVYGQQGKTQVLIKPKPVT
                     FQATVVSEQTRQLVTETLQQASRVADASNSSAQEGKEEPQGYTDSSSSSTESSQSSQV
                     SHRSQPQQPSQPQRTLLQHVAQSQTATQTSVVVKSIPASSPGAITHIMQQALSSHTAF
                     TKHSEELGTEEGEVEEMDTLDPQTGLFYRSALTQSQSTKQQKLSQPQLEQTQLQVKTL
                     QCFQTKQKQTIHLQADQLQHKLTQMPQLSIRHQKLNPLQQEQAQPKPDAQHTQHTVVA
                     KDRQLPTLMAQPPQTVVQVLAVKTTQQLPKLQQAPNQPKIYVQPQTPQSQMALPSSEK
                     QPASQAIPQYAIPCHSSSNVVVEPSGLLELNNFTSQQLDDDETAMEQDIDSSTEDGTE
                     PSPSQSAVERS"
ORIGIN      
        1 ttttcttttt ctatttaaca gggtaaatgt gggaataggg gctggtgaga taactcagtg
       61 attaagagca ctgactgctc ttctggaggt catgagttca aatcccagca accacatggt
      121 ggctcataac cattcgtaat gagaaacaaa ttaaaacaaa caaacaaaca aacaaacaaa
      181 cataaaacag cctatgggtt ggagcaagca gggctggagc aagagggaga agggaagggg
      241 ggaaaggaaa aaaaaaagta taaattactt gtttaaaaaa aaagtgtgga aatagacatg
      301 ggactggtag ggctaggtaa gttttatgcg atgtaaggga gagctgtagt tttgagtctg
      361 atgcttaaga gaggacagta gggattttgg ttcatacctg taatcctcag gagggtctca
      421 agtttgaggc ttgcctagga tacatggtaa gaccttgact ccaaacaaca acaaacaaaa
      481 accaagtaat gaaaatggct aggagagggc tggcaagatg gctcagtggt taagagcgct
      541 gactgctctt ccaaaggtcc acttacatat aataaataaa taaattcttt aaaaagaaaa
      601 cggctaagag aaagggaagg tgtaaagtgg tatgtagtgt cagcagcatt gagacttggg
      661 agcttcttag aaacaggatc tggccctatc cccaaactac gaaattcaaa acttgcattt
      721 taccaggacc taccttcatg tgttcctgct aacattaaat cttgagaggt actactggct
      781 gaaggtagac tctaggacca agctgcctat atataacagg tagagttttc tcattgtgtg
      841 tgtgtgtgtg tgtgtgtacg ttggagatca gaggaaactt ctgtgaagcc agttctccca
      901 ctatcactgg aggattgaat tcaggtcatc aggcttgcaa gacagacaca caacacttgt
      961 tgaaccttct cgtcaacccc aggctgccaa aacttaaatt cttgttttat caatctactt
     1021 atgtgggacc ttagggatgc tttttaaccc gtaccaagga cctattatgt aagagatgga
     1081 gggtcaactc taataatctg tcacttattt ttgacttact gtaaaagttt ttgttgtctt
     1141 aaaagattta ctttcggtgt ctgggtattt tgcctgcgtg gatatctgta tactacatgt
     1201 gtccagtgcc taaggtactc ctgtaactga attaatggtt gtgagccata tgggtgctgg
     1261 gaatagaacc cagcttctct ggaagagagg ccagtgctct taagcactga gccatttctc
     1321 cagctcttta gagacagggc tctactatgt gaaccctctc agttcaccag ttcctgaaca
     1381 actgtgcttt cccatttata gagtggtgaa gcttaattac gcctgtctca cggagatgct
     1441 gcaagagtca aatcatagaa tgtctgttaa attacaaaac ctcctattaa aacttaattt
     1501 accagtgagg tggtggtggt gtacaccttt gattcctgtc tcgagaagac ttaatttact
     1561 accttgcaag gtattcttaa gaaactgacc tcaaaatagg gtgcaataag aaggccagga
     1621 gagctgtata ggaaatggtc ctttttattt ctgactaacc tacagctcca ttcaggagca
     1681 ggagtagact catatgcagt ggttcacaat ttacttaaaa acttcttctt ttttcttgtt
     1741 ttggtctcgg tgtctcttgc agtccagtct gaccctgcat tcctcatctt cttccacttc
     1801 tacagtgctg agattataaa tgtaattcat aatgaactag gaaaagaact ttcattcacg
     1861 ttgtgtatct taatattccc acagggtagt ttttctcgtg tgtccatcct aacatccctt
     1921 agtgctagga atccgattca ggtctccagg tcttgcacat acttgacaag caatctgcca
     1981 ttgagctaga tgtcctccca gtggttaccc tagttttcac gggaatctgc taacagaagg
     2041 atgcacacta acaattcctc aagatttgca ctttcattgc atccgatgct accagagttc
     2101 tttatttaga gggaggacac aacaaaattc gatgggattt ataatactag aaattaactt
     2161 tgagttcttg gatcagagaa acaatatatt gggtccctat cgatctgtaa aataggggca
     2221 caaggcctcc acaacattgt gtggttaaga acaaaggctg atggtgaacc taccatgtcg
     2281 tagtgcctca agtaagtccc ttcttccctt tgtcagattt tgcacgagat atcactacct
     2341 ctcctacttc gtacatggcg taactccaag ctgagaccgc tcggattcct ttcctccact
     2401 tgcaactcct aacaccgaga aaggtgtacg ggccactgtg aggtcttctc tctccgtagt
     2461 ggataacctt tcttgagttg tcgtttgggt ggctggaaga cgctgatgac tactcccaag
     2521 cgtctacgga accagatctt aatcctcaac tgggcatcag ggaccaagct gtgttctttt
     2581 catcccaacc ctcgctagag tgaaaaggtc gaagctcagc tccaattaca gacgccatct
     2641 tgaccgctac gtgtgacgcc acacgtacag ccgaaagagc agctgattgg ctgggaaaga
     2701 ccggaggata ggcgcgcgaa gctggagact ggagggtaat gtagaagccg aaaggaacta
     2761 cactcccaga cttccttgcg catgtgacca gcaagcagca agagaaagag gagcgaggtt
     2821 ggactcggac tacaactccc actaggaccc gcgttgtccg ccctttcctt tcaaaaggca
     2881 gaggaaaagg gacaggaaga atggaggctt ttgagtgctc gtttctcaaa aggcgggaaa
     2941 ggcgaactac acctcccggc gagccgcgcg cgcctgcgcc tgcgctctgg tatctgtcgc
     3001 catcttgccc cttctgaggc accgcaaaca aacctaattc ctggtgtccc ctagtcttgg
     3061 cggaggagcc ttttagatga gccccgaaag gccgggcagg gaggacaagc tctttggggc
     3121 taccagacag aagcagcaat gcctgttgtg tggccaaccc ttttggatct cagcagggat
     3181 gaatgcaaac ggattcttcg aaaattggaa ctggaggcat atgctggagt tatcagtgca
     3241 cttcgggcac aaggggacct caccaaggaa aagaaagatc ttcttggaga gctctcaaaa
     3301 gtccttagca tctcaacaga gcgccaccgt gctgaagttc ggagagcagt aaacgatgaa
     3361 cggttaacaa caattgcaca taatatgtct ggacctaata gttcttcaga gtggtccatc
     3421 gaaggacgta gattggtacc tctgatgccc aggctggttc cccagactgc cttcactgta
     3481 acagcgaatg ctgtggccaa tgcagctgtc cagcacaatg cgtcccttcc tgtgcctgca
     3541 gagacagcaa gcaaagacgg cgttagctgc tcagatgaag atgaaaaacc cagaaaacgc
     3601 aggcgaacaa actcctctag ctcctcccct gttgtcctca aggaagttcc aaaggctgtt
     3661 gttccggtct caaagacgat cactgtgcct gtgagtggaa gtcccaagat gagcaacatt
     3721 atgcagagca ttgccaactc cttaccaccc catatgtcac ctgtgaaaat aacgtttacc
     3781 aaaccatcaa cacagacaac aaacacaaca acacagaagg ttattatagt gaccacatca
     3841 ccaagttcaa cctttgtgcc caacattctc tccaaatctc ataactatgc agcagtcact
     3901 aagcttgtac caacatcagt cattgcctcc acgactcaga agccacctgt tgttataact
     3961 gcgtcccagg cctctctggt caccagtagc agcaatggca acagcagttc tacgtcatca
     4021 cctatttcta gtacagttgc agtaacaacg gtggtatctt ccacaccgtc cgtggtcatg
     4081 tcaacagtag cacaaggtgt atccacatca gcaatcaaag tggcatcgac aagacttcct
     4141 tcccccaaaa gcttagtgag tggccctacc cagattcttg cacagtttcc taaacagcat
     4201 cagcagtctc ctaagcagca gttacagcaa gtacaacaac agacacagca gccagtggcc
     4261 cagccttctt cagtgtctca gcagcagcag cctcagcagt cagcattgcc gcctggtatc
     4321 aaacctacca tccagatcaa acaggagtca ggtgttaaaa tcatcacaca gcaggttcaa
     4381 ccaagtaaaa tcttacccaa accagtgact gcaactctac ccaccagtag caattcccca
     4441 attatggtgg ttagcagtaa tggtgcaatt atgacaacta aactggtaac cactcctacc
     4501 ggtactcagg caacctatac ccggccaaca gtgagcccat ccttaggtcg tgtggctaca
     4561 acccctggag ctgcaaccta tgtgaaaact accagtggca gcatcatcac tgtagtaccc
     4621 aaatcattag ctaccttggg aggcaagata attagcagta atattgtttc tggaacgact
     4681 accaaaatca ctacaatccc aatgacttcc aagcccaatg tgattgttgt acaaaagact
     4741 acaggaaaag gaacgaccat tcaaggcctc cctggcaaaa acgttgtcac aaccttgcta
     4801 aatgctggag gagaaaagac tcttcagaca gtgccagctg gagccaagcc agctataatt
     4861 actgctacaa gacccatcac caaaatgatt gtaacacagc ccaaaggaat aggttccgca
     4921 gtacagccag cagctaaaat cattccaaca aaaattgtgt atggacaaca agggaaaaca
     4981 caggttctaa ttaaacccaa accagtgaca tttcaagcta cagttgtcag tgaacaaaca
     5041 aggcagctgg taacagaaac attacagcaa gcatccaggg tagcagatgc cagtaattca
     5101 tctgctcagg aaggaaaaga ggagccacag ggttacacag acagtagttc ttcttccaca
     5161 gagtcctccc agagttctca agtcagccat cgctcccagc cccaacagcc ttcccagccc
     5221 cagcggaccc tgcttcaaca tgtggctcag tcacagactg cgacgcagac ttcggtggta
     5281 gtaaagtcca tcccagcgtc ttcccctgga gcaatcaccc acatcatgca gcaggcatta
     5341 agcagtcaca ccgcttttac gaaacacagt gaggaacttg gaactgagga gggtgaggtt
     5401 gaagagatgg acacattgga tcctcagaca ggtctgtttt accgctctgc cctgacacaa
     5461 tcgcagtcaa ccaaacagca gaaacttagc cagccccagc tggaacagac tcagctgcaa
     5521 gtgaaaactc tgcagtgctt ccagaccaaa cagaagcaga ccatccacct gcaggcagac
     5581 caactccagc acaaactcac acagatgccc cagctctcta tcaggcatca gaaactgaat
     5641 cctctccagc aggaacaagc acagcccaag ccagatgcac agcacacaca gcatactgtg
     5701 gtggccaaag acaggcagct tcctacctta atggcacagc ccccgcaaac tgtagtacag
     5761 gtgcttgccg tgaaaaccac acagcagctt cctaaactgc agcaagctcc gaaccaacca
     5821 aaaatctacg tgcaacccca aactcctcag agccagatgg cactcccctc ttcagagaaa
     5881 cagcctgcaa gccaggccat tccccagtat gctattcctt gtcactccag ctccaatgtg
     5941 gtggtggagc ccagtgggct tctagagttg aacaacttca ccagtcagca gctagatgac
     6001 gacgagacag ccatggagca ggacatagac agcagcacgg aggacgggac tgagcccagc
     6061 ccctctcaga gcgctgtaga acggtcctag tgtgcagacg ccggagtgca ctttagagcc
     6121 tgcgtggtta ccaaatgtcc agggaaactt aaaatttgtt atagtaaaaa agaaaaaaaa
     6181 aaaaaagaaa gaaagaaaaa agcactttgc tcatatttag gctggggacc tagaagcatt
     6241 ttaacaaaat taaactcaca gaggaatgta ctttaaaaaa aaaaaataga aaaagaaaaa
     6301 aaaaaaagca gaggaaacga tgcaccccat ggagcccggc accttgttgg tgctaagcag
     6361 cgagaagaga ctttcctgtg agtggtcctc gactgctttc cactgagcaa ataccaccag
     6421 agagtatgaa aaggaaaaga aaggagaata tgaagagttt gtatttttga aatgatgtat
     6481 ctgaacagtt tttcaaaaat tgtgtttgtt tttgcaaatc cctggagatg ttgatttggc
     6541 tagcatttta catttgctca gttcatgatt agtttatgaa tacctaggga agtcctggca
     6601 ttggagtcct tgctggacgg tagacatcag tcaggttgct gcctgggcag tttggggtgg
     6661 cttgtacatg tgctccttgg ttgtatacta atttattgtg gagttccaca cttgcctatt
     6721 tatttaatgt aaatgttttg aagcaggccg aatccctttt cctacatgtc ctgggaagct
     6781 ggatccctgg ccttcccacc ttcccacccc ctcacccccc tttaagaaga cggattagag
     6841 aagatttggt ccggaagcag aggaaaagac atttctagcc caaaggaaat gctcagtggt
     6901 gttcctgaaa atgagctctg ctcattggat gctttctcga caccgacgtt gcacacccgt
     6961 gttggactga gactttgaaa acaactttga cttactttgg tttaaatcct ttgaaatgta
     7021 tgaaaatgtt cacttacagt tctaaatgta atgtttttaa gtttttaatt ttttagggtg
     7081 cagtttgttt acgtgcaggt gtggtcttgt gattgctgtc tatcacaagt agagtgaagg
     7141 gtaagggatg ggagggtaag aattttgaca agctgtggca aaggaaacta tacctttcat
     7201 ttttaaaaag tgtaaataga aaagttttta acggttttat atgaatttca ctataaataa
     7261 gcattttaag actgacaaat gttgaactgt atatacattt atcaacttaa ctgcccagtt
     7321 tttggtgctg aagtactgta agtagaattt atcagtagcg tcctaatttc tgtgtctaca
     7381 cctggggaga agctgtgatg ctgtagttaa tcaacttaca caagtgctta cacttgtgta
     7441 acttacactg ataatctcgg caggagcatc cctgagacac ctaccttgtg gtggtgattg
     7501 tccccatttc tactaggtga aagttactca cccatagatg gagctcttgg atagcatttt
     7561 attgtacaaa tgtgtttcaa caaccacttt gtgactgttc ctagctaagg ggaaatttaa
     7621 cttctcttgg gtcatagaca tctttaagaa gctgattatt ctatgaactc tctcaccaaa
     7681 aaaatacaca tgccaggaca cgtgttaaga ttttgcatac aattttaggg acttaagaac
     7741 tcccaagacc atccatgtat tccaggttaa gccttctgtt atggtcagct cattacttac
     7801 aggtgtaagt ttttatcaaa taaaatatct tttggataca catggatcag gaaataagaa
     7861 caaacttgaa taagttatgt tccatctcta ctatcagcat accatgtccg tgttttgaga
     7921 atatagcctc tctgtgctcc agcaggttaa atgacaaatg agtctacttt agtctgcttt
     7981 taaagaatca cttgtgcata tatatttgca cacatacatg aatatcaagt aagatttatt
     8041 ttttttcctt tgaatggttc taatgccaaa tagagcatga ttttatgaac aaataatatt
     8101 cactcctatt ttatgtgcca ggtaaggctc tagccaccaa ggctattaca gtgaggacat
     8161 gggaaatcct acccagatgg agcttacagg caaggcttcc tgctcgtgaa ggaaggggga
     8221 gcaacaattc cagagttctc ctcttttttt taatcagcac atattcagca tatgtagtgg
     8281 ttttgtctgt gtgtgtggag gacagagatc aaccctgggg ttgttgcata gaggccatct
     8341 tcctgattcc tgggttgctg ttttttaaat tacattttta tgtattttat ttttgtatat
     8401 atatgtgtgt gtatgtattc attatgtctg tatacatgtg caggctggag gacaacttac
     8461 aggagttggc tctcttgcca cctgggtcat gggaatttga ctcaggtgtc aggcctggca
     8521 gcaggaggct ttacccactg aggcatcttg caggtcccca ccttgttttt tgcaacaggg
     8581 atctggagct tgctgactag tatagacctg ctgcctgcat agatttgctg cctagcaggt
     8641 ccacttcccc agtgctgggg ttataggcac aagtcatggc ctggcttttc atgtgagagc
     8701 tggtttctgt ttgtgtggca agcactgtac tgacctatct ccccagggcc agcactgagt
     8761 ttcttagaca ttctccaggt tccccccaac ccttatttta catgtgtgag tgtttggcct
     8821 atacatttct ggtgcaccat atacattcag tgcctaccca tggattccct gggactgaag
     8881 ttacagacaa tgtgagatac catgtgagtg ctgggaattg aaaccaggcc ctgttagatc
     8941 agctaccatg gctctagatg actcttaact actgagccat ctctccaggc cctttcttaa
     9001 gtggattgac aatgacagaa catgtctgga tccatcctta gacatgcttt tgctgaagtt
     9061 gatagcacta tttctttgtt ttatgtttaa gtccataaat taaaagtaat tgcaagctat
     9121 ctctgaagaa tatttagaga taatgatgta cttcggcaaa gccattagaa ttcttttcat
     9181 gccgggcgtg gtggtgcacg tctttaatcc cagcacttgg gaggcagagg caggtggatt
     9241 tctgagtttg aggccagcct ggtctacaga gtgagttcca ggacagccag ggctacacag
     9301 agaaaccctg tctcagaaag gaaaaaaaaa aaaaaaaaaa aaaaaaaaac caacaaaaag
     9361 aattctgttg atcattgaag atttggtttt gagttggaga tgcagctcag ttagtaggat
     9421 gcttgcctgg aatgctcagc tctgagtttg attcttagca ccacagaaaa actaggcagg
     9481 gtggtggatg cttataattc cagttcttgg gggttggaag caggagaatg ggaagccaca
     9541 gtcattccct accacataat acatttgacc ccaaatgtat tatctcaaaa gagatttggt
     9601 ttaaagtaaa ctaataaata cctactattg caggtgtacc tta
//
