LOCUS       XM_030242483            8534 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus EMSY, BRCA2-interacting transcriptional
            repressor (Emsy), transcript variant X16, mRNA.
ACCESSION   XM_030242483
VERSION     XM_030242483.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000073.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030242483.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8534
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="7"
     gene            1..8534
                     /gene="Emsy"
                     /gene_synonym="2210018M11Rik; 2310016L09Rik"
                     /note="EMSY, BRCA2-interacting transcriptional repressor;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 5 mRNAs, 23 ESTs, 601 long SRA reads, 1
                     Protein, and 93% coverage of the annotated genomic feature
                     by RNAseq alignments, including 35 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:233545"
                     /db_xref="MGI:MGI:1924203"
     CDS             3139..6768
                     /gene="Emsy"
                     /gene_synonym="2210018M11Rik; 2310016L09Rik"
                     /codon_start=1
                     /product="BRCA2-interacting transcriptional repressor EMSY
                     isoform X16"
                     /protein_id="XP_030098343.1"
                     /db_xref="GeneID:233545"
                     /db_xref="MGI:MGI:1924203"
                     /translation="MPVVWPTLLDLSRDECKRILRKLELEAYAGVISALRAQGDLTKE
                     KKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHKMNLSLYLGERPSYSMSGPNS
                     SSEWSIEGRRLVPLMPRLVPQTAFTVTANAVANAAVQHNASLPVPAETASKDGVSCSD
                     EDEKPRKRRRTNSSSSSPVVLKEVPKAVVPVSKTITVPVSGSPKMSNIMQSIANSLPP
                     HMSPVKITFTKPSTQTTNTTTQKVIIVTTSPSSTFVPNILSKSHNYAAVTKLVPTSVI
                     ASTTQKPPVVITASQASLVTSSSNGNSSSTSSPISSTVAVTTVVSSTPSVVMSTVAQG
                     VSTSAIKVASTRLPSPKSLVSGPTQILAQFPKQHQQSPKQQLQQVQQQTQQPVAQPSS
                     VSQQQQPQQSALPPGIKPTIQIKQESGVKIITQQVQPSKILPKPVTATLPTSSNSPIM
                     VVSSNGAIMTTKLVTTPTGTQATYTRPTVSPSLGRVATTPGAATYVKTTSGSIITVVP
                     KSLATLGGKIISSNIVSGTTTKITTIPMTSKPNVIVVQKTTGKGTTIQGLPGKNVVTT
                     LLNAGGEKTLQTVPAGAKPAIITATRPITKMIVTQPKGIGSAVQPAAKIIPTKIVYGQ
                     QGKTQVLIKPKPVTFQATVVSEQTRQLVTETLQQASRVADASNSSAQEGKEEPQGYTD
                     SSSSSTESSQSSQVKEKLESKPRQPTIDLSQMAVPIQMTQEKRHSPESPSIAVVESEL
                     VAEYITTVSHRSQPQQPSQPQRTLLQHVAQSQTATQTSVVVKSIPASSPGAITHIMQQ
                     ALSSHTAFTKHSEELGTEEGEVEEMDTLDPQTGLFYRSALTQSQSTKQQKLSQPQLEQ
                     TQLQVKTLQCFQTKQKQTIHLQADQLQHKLTQMPQLSIRHQKLNPLQQEQAQPKPDAQ
                     HTQHTVVAKDRQLPTLMAQPPQTVVQVLAVKTTQQLPKLQQAPNQPKIYVQPQTPQSQ
                     MALPSSEKQPASQVEQPIITQGSSVTKITFEGRQPPTVTKITGGSSVPKLTSPVTSIS
                     PIQASEKTAVSDILQMSLMEAQIDTNVEHMVVDPPKKALATNVLTGEAGALPSTHVVV
                     AGMTKCRESCSSPSAVGPPLTTRKIEAAGVPTTGQFMRIQNVGQKKAEESPTEIIIQA
                     IPQYAIPCHSSSNVVVEPSGLLELNNFTSQQLDDDETAMEQDIDSSTEDGTEPSPSQS
                     AVERS"
ORIGIN      
        1 ttttcttttt ctatttaaca gggtaaatgt gggaataggg gctggtgaga taactcagtg
       61 attaagagca ctgactgctc ttctggaggt catgagttca aatcccagca accacatggt
      121 ggctcataac cattcgtaat gagaaacaaa ttaaaacaaa caaacaaaca aacaaacaaa
      181 cataaaacag cctatgggtt ggagcaagca gggctggagc aagagggaga agggaagggg
      241 ggaaaggaaa aaaaaaagta taaattactt gtttaaaaaa aaagtgtgga aatagacatg
      301 ggactggtag ggctaggtaa gttttatgcg atgtaaggga gagctgtagt tttgagtctg
      361 atgcttaaga gaggacagta gggattttgg ttcatacctg taatcctcag gagggtctca
      421 agtttgaggc ttgcctagga tacatggtaa gaccttgact ccaaacaaca acaaacaaaa
      481 accaagtaat gaaaatggct aggagagggc tggcaagatg gctcagtggt taagagcgct
      541 gactgctctt ccaaaggtcc acttacatat aataaataaa taaattcttt aaaaagaaaa
      601 cggctaagag aaagggaagg tgtaaagtgg tatgtagtgt cagcagcatt gagacttggg
      661 agcttcttag aaacaggatc tggccctatc cccaaactac gaaattcaaa acttgcattt
      721 taccaggacc taccttcatg tgttcctgct aacattaaat cttgagaggt actactggct
      781 gaaggtagac tctaggacca agctgcctat atataacagg tagagttttc tcattgtgtg
      841 tgtgtgtgtg tgtgtgtacg ttggagatca gaggaaactt ctgtgaagcc agttctccca
      901 ctatcactgg aggattgaat tcaggtcatc aggcttgcaa gacagacaca caacacttgt
      961 tgaaccttct cgtcaacccc aggctgccaa aacttaaatt cttgttttat caatctactt
     1021 atgtgggacc ttagggatgc tttttaaccc gtaccaagga cctattatgt aagagatgga
     1081 gggtcaactc taataatctg tcacttattt ttgacttact gtaaaagttt ttgttgtctt
     1141 aaaagattta ctttcggtgt ctgggtattt tgcctgcgtg gatatctgta tactacatgt
     1201 gtccagtgcc taaggtactc ctgtaactga attaatggtt gtgagccata tgggtgctgg
     1261 gaatagaacc cagcttctct ggaagagagg ccagtgctct taagcactga gccatttctc
     1321 cagctcttta gagacagggc tctactatgt gaaccctctc agttcaccag ttcctgaaca
     1381 actgtgcttt cccatttata gagtggtgaa gcttaattac gcctgtctca cggagatgct
     1441 gcaagagtca aatcatagaa tgtctgttaa attacaaaac ctcctattaa aacttaattt
     1501 accagtgagg tggtggtggt gtacaccttt gattcctgtc tcgagaagac ttaatttact
     1561 accttgcaag gtattcttaa gaaactgacc tcaaaatagg gtgcaataag aaggccagga
     1621 gagctgtata ggaaatggtc ctttttattt ctgactaacc tacagctcca ttcaggagca
     1681 ggagtagact catatgcagt ggttcacaat ttacttaaaa acttcttctt ttttcttgtt
     1741 ttggtctcgg tgtctcttgc agtccagtct gaccctgcat tcctcatctt cttccacttc
     1801 tacagtgctg agattataaa tgtaattcat aatgaactag gaaaagaact ttcattcacg
     1861 ttgtgtatct taatattccc acagggtagt ttttctcgtg tgtccatcct aacatccctt
     1921 agtgctagga atccgattca ggtctccagg tcttgcacat acttgacaag caatctgcca
     1981 ttgagctaga tgtcctccca gtggttaccc tagttttcac gggaatctgc taacagaagg
     2041 atgcacacta acaattcctc aagatttgca ctttcattgc atccgatgct accagagttc
     2101 tttatttaga gggaggacac aacaaaattc gatgggattt ataatactag aaattaactt
     2161 tgagttcttg gatcagagaa acaatatatt gggtccctat cgatctgtaa aataggggca
     2221 caaggcctcc acaacattgt gtggttaaga acaaaggctg atggtgaacc taccatgtcg
     2281 tagtgcctca agtaagtccc ttcttccctt tgtcagattt tgcacgagat atcactacct
     2341 ctcctacttc gtacatggcg taactccaag ctgagaccgc tcggattcct ttcctccact
     2401 tgcaactcct aacaccgaga aaggtgtacg ggccactgtg aggtcttctc tctccgtagt
     2461 ggataacctt tcttgagttg tcgtttgggt ggctggaaga cgctgatgac tactcccaag
     2521 cgtctacgga accagatctt aatcctcaac tgggcatcag ggaccaagct gtgttctttt
     2581 catcccaacc ctcgctagag tgaaaaggtc gaagctcagc tccaattaca gacgccatct
     2641 tgaccgctac gtgtgacgcc acacgtacag ccgaaagagc agctgattgg ctgggaaaga
     2701 ccggaggata ggcgcgcgaa gctggagact ggagggtaat gtagaagccg aaaggaacta
     2761 cactcccaga cttccttgcg catgtgacca gcaagcagca agagaaagag gagcgaggtt
     2821 ggactcggac tacaactccc actaggaccc gcgttgtccg ccctttcctt tcaaaaggca
     2881 gaggaaaagg gacaggaaga atggaggctt ttgagtgctc gtttctcaaa aggcgggaaa
     2941 ggcgaactac acctcccggc gagccgcgcg cgcctgcgcc tgcgctctgg tatctgtcgc
     3001 catcttgccc cttctgaggc accgcaaaca aacctaattc ctggtgtccc ctagtcttgg
     3061 cggaggagcc ttttagatga gccccgaaag gccgggcagg gaggacaagc tctttggggc
     3121 taccagacag aagcagcaat gcctgttgtg tggccaaccc ttttggatct cagcagggat
     3181 gaatgcaaac ggattcttcg aaaattggaa ctggaggcat atgctggagt tatcagtgca
     3241 cttcgggcac aaggggacct caccaaggaa aagaaagatc ttcttggaga gctctcaaaa
     3301 gtccttagca tctcaacaga gcgccaccgt gctgaagttc ggagagcagt aaacgatgaa
     3361 cggttaacaa caattgcaca taaaatgaat ttatccttat atttgggtga aagaccaagt
     3421 tacagtatgt ctggacctaa tagttcttca gagtggtcca tcgaaggacg tagattggta
     3481 cctctgatgc ccaggctggt tccccagact gccttcactg taacagcgaa tgctgtggcc
     3541 aatgcagctg tccagcacaa tgcgtccctt cctgtgcctg cagagacagc aagcaaagac
     3601 ggcgttagct gctcagatga agatgaaaaa cccagaaaac gcaggcgaac aaactcctct
     3661 agctcctccc ctgttgtcct caaggaagtt ccaaaggctg ttgttccggt ctcaaagacg
     3721 atcactgtgc ctgtgagtgg aagtcccaag atgagcaaca ttatgcagag cattgccaac
     3781 tccttaccac cccatatgtc acctgtgaaa ataacgttta ccaaaccatc aacacagaca
     3841 acaaacacaa caacacagaa ggttattata gtgaccacat caccaagttc aacctttgtg
     3901 cccaacattc tctccaaatc tcataactat gcagcagtca ctaagcttgt accaacatca
     3961 gtcattgcct ccacgactca gaagccacct gttgttataa ctgcgtccca ggcctctctg
     4021 gtcaccagta gcagcaatgg caacagcagt tctacgtcat cacctatttc tagtacagtt
     4081 gcagtaacaa cggtggtatc ttccacaccg tccgtggtca tgtcaacagt agcacaaggt
     4141 gtatccacat cagcaatcaa agtggcatcg acaagacttc cttcccccaa aagcttagtg
     4201 agtggcccta cccagattct tgcacagttt cctaaacagc atcagcagtc tcctaagcag
     4261 cagttacagc aagtacaaca acagacacag cagccagtgg cccagccttc ttcagtgtct
     4321 cagcagcagc agcctcagca gtcagcattg ccgcctggta tcaaacctac catccagatc
     4381 aaacaggagt caggtgttaa aatcatcaca cagcaggttc aaccaagtaa aatcttaccc
     4441 aaaccagtga ctgcaactct acccaccagt agcaattccc caattatggt ggttagcagt
     4501 aatggtgcaa ttatgacaac taaactggta accactccta ccggtactca ggcaacctat
     4561 acccggccaa cagtgagccc atccttaggt cgtgtggcta caacccctgg agctgcaacc
     4621 tatgtgaaaa ctaccagtgg cagcatcatc actgtagtac ccaaatcatt agctaccttg
     4681 ggaggcaaga taattagcag taatattgtt tctggaacga ctaccaaaat cactacaatc
     4741 ccaatgactt ccaagcccaa tgtgattgtt gtacaaaaga ctacaggaaa aggaacgacc
     4801 attcaaggcc tccctggcaa aaacgttgtc acaaccttgc taaatgctgg aggagaaaag
     4861 actcttcaga cagtgccagc tggagccaag ccagctataa ttactgctac aagacccatc
     4921 accaaaatga ttgtaacaca gcccaaagga ataggttccg cagtacagcc agcagctaaa
     4981 atcattccaa caaaaattgt gtatggacaa caagggaaaa cacaggttct aattaaaccc
     5041 aaaccagtga catttcaagc tacagttgtc agtgaacaaa caaggcagct ggtaacagaa
     5101 acattacagc aagcatccag ggtagcagat gccagtaatt catctgctca ggaaggaaaa
     5161 gaggagccac agggttacac agacagtagt tcttcttcca cagagtcctc ccagagttct
     5221 caagtaaagg aaaaattgga atctaaacca agacaaccca ctattgactt gagtcaaatg
     5281 gcagtaccta ttcagatgac ccaggaaaag agacattctc ctgagagtcc atccattgct
     5341 gtggtagagt cagaactagt tgctgaatac atcaccacgg tcagccatcg ctcccagccc
     5401 caacagcctt cccagcccca gcggaccctg cttcaacatg tggctcagtc acagactgcg
     5461 acgcagactt cggtggtagt aaagtccatc ccagcgtctt cccctggagc aatcacccac
     5521 atcatgcagc aggcattaag cagtcacacc gcttttacga aacacagtga ggaacttgga
     5581 actgaggagg gtgaggttga agagatggac acattggatc ctcagacagg tctgttttac
     5641 cgctctgccc tgacacaatc gcagtcaacc aaacagcaga aacttagcca gccccagctg
     5701 gaacagactc agctgcaagt gaaaactctg cagtgcttcc agaccaaaca gaagcagacc
     5761 atccacctgc aggcagacca actccagcac aaactcacac agatgcccca gctctctatc
     5821 aggcatcaga aactgaatcc tctccagcag gaacaagcac agcccaagcc agatgcacag
     5881 cacacacagc atactgtggt ggccaaagac aggcagcttc ctaccttaat ggcacagccc
     5941 ccgcaaactg tagtacaggt gcttgccgtg aaaaccacac agcagcttcc taaactgcag
     6001 caagctccga accaaccaaa aatctacgtg caaccccaaa ctcctcagag ccagatggca
     6061 ctcccctctt cagagaaaca gcctgcaagc caggtggagc agccaattat aactcaagga
     6121 tcctctgtta caaagataac atttgagggg cgccagcctc ccacagttac aaagataact
     6181 ggtggcagtt ctgttcctaa gctgacatca ccagttacaa gcatatctcc cattcaggcc
     6241 tctgagaaga cagcagtgtc agacattttg caaatgtctt tgatggaagc tcagattgat
     6301 acaaatgtag aacatatggt agtggatccc ccaaagaagg ctctagccac caatgtgctc
     6361 actggtgagg caggagctct accctccacc catgtggtgg tggcagggat gacgaaatgt
     6421 agagagtcct gttcaagtcc atctgctgtt ggccctcccc taacgaccag aaaaatcgaa
     6481 gcagcaggag tgcctacgac aggccagttc atgcgtattc agaatgtagg ccaaaagaaa
     6541 gctgaagaga gcccaacaga aattatcatc caggccattc cccagtatgc tattccttgt
     6601 cactccagct ccaatgtggt ggtggagccc agtgggcttc tagagttgaa caacttcacc
     6661 agtcagcagc tagatgacga cgagacagcc atggagcagg acatagacag cagcacggag
     6721 gacgggactg agcccagccc ctctcagagc gctgtagaac ggtcctagtg tgcagacgcc
     6781 ggagtgcact ttagagcctg cgtggttacc aaatgtccag ggaaacttaa aatttgttat
     6841 agtaaaaaag aaaaaaaaaa aaaagaaaga aagaaaaaag cactttgctc atatttaggc
     6901 tggggaccta gaagcatttt aacaaaatta aactcacaga ggaatgtact ttaaaaaaaa
     6961 aaaatagaaa aagaaaaaaa aaaaagcaga ggaaacgatg caccccatgg agcccggcac
     7021 cttgttggtg ctaagcagcg agaagagact ttcctgtgag tggtcctcga ctgctttcca
     7081 ctgagcaaat accaccagag agtatgaaaa ggaaaagaaa ggagaatatg aagagtttgt
     7141 atttttgaaa tgatgtatct gaacagtttt tcaaaaattg tgtttgtttt tgcaaatccc
     7201 tggagatgtt gatttggcta gcattttaca tttgctcagt tcatgattag tttatgaata
     7261 cctagggaag tcctggcatt ggagtccttg ctggacggta gacatcagtc aggttgctgc
     7321 ctgggcagtt tggggtggct tgtacatgtg ctccttggtt gtatactaat ttattgtgga
     7381 gttccacact tgcctattta tttaatgtaa atgttttgaa gcaggccgaa tcccttttcc
     7441 tacatgtcct gggaagctgg atccctggcc ttcccacctt cccaccccct cacccccctt
     7501 taagaagacg gattagagaa gatttggtcc ggaagcagag gaaaagacat ttctagccca
     7561 aaggaaatgc tcagtggtgt tcctgaaaat gagctctgct cattggatgc tttctcgaca
     7621 ccgacgttgc acacccgtgt tggactgaga ctttgaaaac aactttgact tactttggtt
     7681 taaatccttt gaaatgtatg aaaatgttca cttacagttc taaatgtaat gtttttaagt
     7741 ttttaatttt ttagggtgca gtttgtttac gtgcaggtgt ggtcttgtga ttgctgtcta
     7801 tcacaagtag agtgaagggt aagggatggg agggtaagaa ttttgacaag ctgtggcaaa
     7861 ggaaactata cctttcattt ttaaaaagtg taaatagaaa agtttttaac ggttttatat
     7921 gaatttcact ataaataagc attttaagac tgacaaatgt tgaactgtat atacatttat
     7981 caacttaact gcccagtttt tggtgctgaa gtactgtaag tagaatttat cagtagcgtc
     8041 ctaatttctg tgtctacacc tggggagaag ctgtgatgct gtagttaatc aacttacaca
     8101 agtgcttaca cttgtgtaac ttacactgat aatctcggca ggagcatccc tgagacacct
     8161 accttgtggt ggtgattgtc cccatttcta ctaggtgaaa gttactcacc catagatgga
     8221 gctcttggat agcattttat tgtacaaatg tgtttcaaca accactttgt gactgttcct
     8281 agctaagggg aaatttaact tctcttgggt catagacatc tttaagaagc tgattattct
     8341 atgaactctc tcaccaaaaa aatacacatg ccaggacacg tgttaagatt ttgcatacaa
     8401 ttttagggac ttaagaactc ccaagaccat ccatgtattc caggttaagc cttctgttat
     8461 ggtcagctca ttacttacag gtgtaagttt ttatcaaata aaatatcttt tggatacaca
     8521 tggatcagga aata
//
