LOCUS       XM_006510021            5022 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus ELAV like RNA binding protein 3 (Elavl3),
            transcript variant X1, mRNA.
ACCESSION   XM_006510021
VERSION     XM_006510021.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000075.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_006510021.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5022
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="9"
     gene            1..5022
                     /gene="Elavl3"
                     /gene_synonym="2600009P04Rik; Huc; mHuC; PLE21"
                     /note="ELAV like RNA binding protein 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 6 mRNAs, 7 ESTs, 3452 long SRA reads, 3 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 24 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:15571"
                     /db_xref="MGI:MGI:109157"
     CDS             424..1524
                     /gene="Elavl3"
                     /gene_synonym="2600009P04Rik; Huc; mHuC; PLE21"
                     /codon_start=1
                     /product="ELAV-like protein 3 isoform X1"
                     /protein_id="XP_006510084.1"
                     /db_xref="GeneID:15571"
                     /db_xref="MGI:MGI:109157"
                     /translation="MVTILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNY
                     LPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGL
                     KLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQA
                     TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLY
                     QSSARRYAGPLHHQTQRFRLDNLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSG
                     GAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNY
                     DEAAMAIASLNGYRLGERVLQVSFKTSKQHKA"
ORIGIN      
        1 agcgcggagc gcgcagcgcg ggccggtggg agggagggag ggcgggcgag aggagaggac
       61 ccatcacccg gcacgggaca ggccgaactg agggcccgcc gcagaaggca gagctgccga
      121 gatctcagtc acagaaagag cgacttcttc aggcccggcg gggccgcgct ccgggcaccc
      181 tccactgcgt gcccgctccc tccatccacc tgccgctggg ggtctggccg tcgaagcgcg
      241 catccccagg ctcgggtcag ttcccggcct tcgaaggcgc cgccgcctcc atctcctcct
      301 ctgcagcggc cgcagacgca gacgcccggg cgggaccccg gcgtgagcac caggcgcccc
      361 cctaggagtg cacgaccccc ggagccgccc tcgatacgga ccgcgcccgc cgggcacaca
      421 agaatggtca ctatactggg ggccatggag tctcaggttg ggggggggcc ggccggcccg
      481 gccctgccca acgggccact ccttgggaca aatggagcca ctgacgacag caagaccaac
      541 ctcatcgtca actacctacc ccagaacatg acacaggacg agttcaagag tctcttcggc
      601 agcatcgggg acattgaatc ctgcaagttg gttcgggata agatcacagg gcagagcctg
      661 ggctatgggt ttgtgaacta ctctgacccc aatgatgcag acaaagccat caacaccctc
      721 aatggcctca aactgcagac caagaccatc aaggtgtcct atgcacgtcc cagttctgcc
      781 tctatccggg atgccaacct gtatgtcagt ggcctcccca agaccatgag ccagaaggag
      841 atggagcagc tcttctccca gtacggccga atcatcactt ccagaatcct gctggaccag
      901 gccacaggtg tctctcgggg tgtgggattc atccgctttg acaagaggat cgaggcagag
      961 gaggccatca agggactgaa tgggcagaaa ccactgggtg ctgctgagcc catcacggtc
     1021 aagttcgcaa acaacccaag tcagaagaca gggcaggccc tgctcaccca cctgtaccag
     1081 tcctctgcca ggcgctacgc cggccccctg caccatcaga cacagcgctt ccggctggac
     1141 aatttgctca atatggccta cggagtcaag agtcccctgt cgctcatcgc caggttctcc
     1201 ccaatcgcca tcgatggcat gagtggcctg gcaggcgtgg gcttgtccgg aggcgctgca
     1261 ggcgctggct ggtgcatctt cgtgtacaac ctgtccccag aagctgatga gagcgtgctg
     1321 tggcagcttt tcggaccctt tggggcggtc accaatgtca aggtcatccg agatttcacc
     1381 accaacaagt gcaagggttt cggcttcgtc accatgacca actacgacga ggctgccatg
     1441 gctatcgcca gcctcaacgg ctaccgcctg ggcgagcgcg tgctgcaggt gtccttcaag
     1501 accagcaagc agcacaaggc ctgagcattt attgccctcc ctccccgggc agcagagaga
     1561 gagagagaga gagagagaga gagagagaga gagagagaga gagaggaaaa gagagagagt
     1621 gtgcgcaatc tcgagagcag gcagacccat acacctgcat aaacaccaca gggtgagcat
     1681 ccggatgggg agggtctgca gggaattgag ggaagggtgt ccccaccctg ttctccttgc
     1741 tttccccacc tcaggctggg gcttgttcac tctctcgtct tggtttggtt catggtgatg
     1801 gcttttgttt cttttttcgg ctaaaaacaa aaagaagaaa gcagagagga gaccccccca
     1861 tcccacctcg ccctccccac cctgcatggg atggcttagg ggacacaatg gtgccctact
     1921 caggcctccc ttgcccaggc ctggcctata ctgagagaaa ggggagggaa caggtttaaa
     1981 aatccccaaa acggcaaaaa aaaacaaaaa acaaaaaaac atgaaagagg ggagtgggcg
     2041 tccccatccc ccgccccagt ccctgagcag agaacaggga gcagagttgg ggcagagcag
     2101 gaagcagaaa aaaaaagggt ggggtggggt gggaggggaa gaaaaactct atttttgtaa
     2161 aaagggaaaa agacctcgtg gagaattttt actggggatt cttgaacttg aaaaaaaatc
     2221 acaaaaaaaa aaaagacaaa aaaaaaaaaa agaaactatt ttggcaagtt atgtttacca
     2281 actactgggg caggggtgta gggagcaggg ctgagggctg agagtccata gggccagcat
     2341 cacaggtaca cacacacaca cacacacaca cacgcacgca cgcacgtgca cataagcaaa
     2401 catggccaca ggaaaggaag gacatgcact tggaccttgg ggacacagat acacaacaca
     2461 tagatacaga aacatttcag gatacattca ggatgaccaa atccacacca gagaacagag
     2521 acacagacag acccttggcg ctgcataaac agagatacag acgttggctg cttgtccaca
     2581 aaaccatgtg atgtgtgaaa tgcactgtga cagatccatt tggatgtaag tctggacgcc
     2641 agtccccagt gagagctggg gaggtagctc agttggtagg acacttgtcc agctttcctg
     2701 aagcctgggc tcttccccag cactgcacaa gcctggtgtg gcacacagac ctcattcatt
     2761 ctagtgctca aatggtagag tcagatcaga tcaagactag ccttggctac atagtgagtt
     2821 taaggtcagc ccgggctaca taagaccctg tctcaaaatg caaaaccaaa taggtcacct
     2881 agaagcatac aacaccaggg acaaaagccc atgtccacag catcctatag gcccagacaa
     2941 ggtgttccta cttaagaccc tggcccagtt acttcctcca gccaggctgg tcccaccact
     3001 tctccctggg tccccaacaa gccccaccct tgggttctct acacaaactc cttagcccac
     3061 caggggcctc cctgctgccc aacacacaga cgtacacaca tggcgtccat gcatccaaac
     3121 acacgatacc tcgttctact ttggcatcac cgtgggctgg agggggctct cactccccac
     3181 aacactgagg ccaaaggacc cccctgtccc tgggtctggg gagaggtctg cagtcctcct
     3241 ccctcaagta gggacagagt gctccctacc tgcaagcaag cacccagcac actccagcag
     3301 acccaggggt ggatggaccc aaggtgtccc ccaccccatc cacttgtcgc cctcttttga
     3361 ttgttgggtt tttttgtctt ttccggattg tgggggaatc atggatgcag ccttcgtgag
     3421 ccccggcccg gcttcggaat ggattttgca gccatgcccc acacacaccc tgacttttca
     3481 ttcttttatg caagttccaa cagaagccac aggctggagc cctgggagcc ccaaaccttc
     3541 aacccacccc acagtgggcc cagtcacaac caagaatggt gaagcccctc ccccactcta
     3601 cactctaggt tctagttgct ttcttccggt gtcctctgcg tttggtgtct ggccacggcc
     3661 ccatttgagc gtccaactct ctctccccac ccctcctggt gttgttctta accgtctgtg
     3721 gagtttctgc tgcaaggaac aaaaagaaaa aaaaatttta aaaaaagacc aaaaaataaa
     3781 aaatgaaaaa aaaaaagaag ggaagaaaac tcaaacagaa gatgaaatat agcaaaagga
     3841 aagaaaagaa aaaagaaaaa aaccacaaag acgatttaaa aaaaaaaaaa aggaaaaaaa
     3901 aagataaact gtcaccagtt aactttcttg tacttttttg ctgaatttag cttcatgtag
     3961 ttttaactta ttgctgtgtt taactattta ttctccttgt tggcctgtaa ggacctttgt
     4021 gtatatttct gttccttcat gagtttgcag gttgaaggga gctgttcctt ttctttcagt
     4081 tttgctgaga tgtggttatg cctaatttat ttatacaaag gggaagtgga gtcattaaag
     4141 taataattat taataacagt aatggtagca gcgtgccccc cgggggtgcc gtgggctccg
     4201 aggggtgggg tggggtcccc acagctggcg gtgcccgggg ctctcaacgg gattgttttg
     4261 ctattgtctt gagaagtttt tctgtctatt tagctggtga actctagctt gctcacgata
     4321 caccgaacct atttattctg gtggtttcta agtctgccct tccactcccc actccctccc
     4381 agcaggacag ggactcctca cctccaggag ggtccagccc cttcttcccc tgctgtttct
     4441 ggggtctccc ctgccctccg cacatgcagg aggcatccga gcaataaggg ctgggtttgt
     4501 cccccaccct ggggggagga tgggctctga agagggggca cctcccccca ccccctccca
     4561 ccaaggccta ggtccctgct gcctccaaga ctgggagggg ggactttttt tctaggacac
     4621 aaagcttagc ccagccaggt cccctccctg gaggccagtc ccccaagagg gccaggccag
     4681 gggctcccag ggagaggggc ccttgggtct tccaaagtcc ctggggggtt ggggcagggc
     4741 cagtgggaag agggctcagc cctctaaccc ttccttcatc ctgttgattg ggaaagtttc
     4801 aaacatgaca gtctatgttg gaggtgatat aaaagaactg tagaaaaaaa aaaaaaaacc
     4861 ataaaacaaa aaccaaacct caacccgaac ccaagaacac ttcaagttgc gttagacatt
     4921 tcttaccgag ccccaggcct ggccgcggta actgactttt acatgggatt ctttaactat
     4981 ttgtactttt catgccagaa aataaaaagt tcagaatctt aa
//
