LOCUS       NM_001411926            2113 bp    mRNA    linear   ROD 13-JUN-2024
DEFINITION  Mus musculus eukaryotic translation initiation factor 3, subunit D
            (Eif3d), transcript variant 2, mRNA.
ACCESSION   NM_001411926 XM_006521192
VERSION     NM_001411926.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2113)
  AUTHORS   Fujii,K., Zhulyn,O., Byeon,G.W., Genuth,N.R., Kerr,C.H., Walsh,E.M.
            and Barna,M.
  TITLE     Controlling tissue patterning by translational regulation of
            signaling transcripts through the core translation factor eIF3c
  JOURNAL   Dev Cell 56 (21), 2928-2937 (2021)
   PUBMED   34752747
REFERENCE   2  (bases 1 to 2113)
  AUTHORS   Distler,U., Schmeisser,M.J., Pelosi,A., Reim,D., Kuharev,J.,
            Weiczner,R., Baumgart,J., Boeckers,T.M., Nitsch,R., Vogt,J. and
            Tenzer,S.
  TITLE     In-depth protein profiling of the postsynaptic density from mouse
            hippocampus using data-independent acquisition proteomics
  JOURNAL   Proteomics 14 (21-22), 2607-2613 (2014)
   PUBMED   25211037
REFERENCE   3  (bases 1 to 2113)
  AUTHORS   Zeng,L., Wan,Y., Li,D., Wu,J., Shao,M., Chen,J., Hui,L., Ji,H. and
            Zhu,X.
  TITLE     The m subunit of murine translation initiation factor eIF3
            maintains the integrity of the eIF3 complex and is required for
            embryonic development, homeostasis, and organ size control
  JOURNAL   J Biol Chem 288 (42), 30087-30093 (2013)
   PUBMED   24003236
REFERENCE   4  (bases 1 to 2113)
  AUTHORS   Masutani,M., Sonenberg,N., Yokoyama,S. and Imataka,H.
  TITLE     Reconstitution reveals the functional core of mammalian eIF3
  JOURNAL   EMBO J 26 (14), 3373-3383 (2007)
   PUBMED   17581632
REFERENCE   5  (bases 1 to 2113)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL589650.20.
            
            On Sep 9, 2022 this sequence version replaced XM_006521192.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13948564.586086.1,
                                           SRR7345562.4810811.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164134
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-348               AL589650.20        166834-167181
            349-481             AL589650.20        169051-169183
            482-527             AL589650.20        169419-169464
            528-664             AL589650.20        170201-170337
            665-750             AL589650.20        170873-170958
            751-823             AL589650.20        171430-171502
            824-936             AL589650.20        172625-172737
            937-1069            AL589650.20        173488-173620
            1070-1217           AL589650.20        174315-174462
            1218-1348           AL589650.20        175070-175200
            1349-1434           AL589650.20        175709-175794
            1435-1564           AL589650.20        175897-176026
            1565-1707           AL589650.20        177544-177686
            1708-1991           AL589650.20        177845-178128
            1992-2113           AL589650.20        178518-178639
FEATURES             Location/Qualifiers
     source          1..2113
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 36.92 cM"
     gene            1..2113
                     /gene="Eif3d"
                     /gene_synonym="66/67kDa; eIF3p66; Eif3s7"
                     /note="eukaryotic translation initiation factor 3, subunit
                     D"
                     /db_xref="GeneID:55944"
                     /db_xref="MGI:MGI:1933181"
     exon            1..348
                     /gene="Eif3d"
                     /gene_synonym="66/67kDa; eIF3p66; Eif3s7"
                     /inference="alignment:Splign:2.1.0"
     exon            349..481
                     /gene="Eif3d"
                     /gene_synonym="66/67kDa; eIF3p66; Eif3s7"
                     /inference="alignment:Splign:2.1.0"
     CDS             359..2005
                     /gene="Eif3d"
                     /gene_synonym="66/67kDa; eIF3p66; Eif3s7"
                     /note="eukaryotic translation initiation factor 3, subunit
                     7 (zeta); translation initiation factor eIF3 p66;
                     eIF-3-zeta; eukaryotic translation initiation factor 3
                     subunit 7"
                     /codon_start=1
                     /product="eukaryotic translation initiation factor 3
                     subunit D"
                     /protein_id="NP_001398855.1"
                     /db_xref="GeneID:55944"
                     /db_xref="MGI:MGI:1933181"
                     /translation="MAKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGKVAD
                     WTGATYQDKRYTNKYSSQFGGGSQYAYFHEEDETSFQLVDTARTQKTAYQRNRMRFAQ
                     RNLRRDKDRRNMVQFNLQTLPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRDS
                     SVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLR
                     SIKRIFHTVTTTDDPVIRKLAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKL
                     FFDKRDNSDFDLLTVSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMGRER
                     YNFPNPNPFVEDDMDKNEIASVAYRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFIN
                     IKTLNEWDSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLG
                     YVSRYHVKDSSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLI
                     LKDPNKQVIRVYSLPDGTFSSEEDEEDEEEEEEEEEEEET"
     exon            482..527
                     /gene="Eif3d"
                     /gene_synonym="66/67kDa; eIF3p66; Eif3s7"
                     /inference="alignment:Splign:2.1.0"
     exon            528..664
                     /gene="Eif3d"
                     /gene_synonym="66/67kDa; eIF3p66; Eif3s7"
                     /inference="alignment:Splign:2.1.0"
     exon            665..750
                     /gene="Eif3d"
                     /gene_synonym="66/67kDa; eIF3p66; Eif3s7"
                     /inference="alignment:Splign:2.1.0"
     exon            751..823
                     /gene="Eif3d"
                     /gene_synonym="66/67kDa; eIF3p66; Eif3s7"
                     /inference="alignment:Splign:2.1.0"
     exon            824..936
                     /gene="Eif3d"
                     /gene_synonym="66/67kDa; eIF3p66; Eif3s7"
                     /inference="alignment:Splign:2.1.0"
     exon            937..1069
                     /gene="Eif3d"
                     /gene_synonym="66/67kDa; eIF3p66; Eif3s7"
                     /inference="alignment:Splign:2.1.0"
     exon            1070..1217
                     /gene="Eif3d"
                     /gene_synonym="66/67kDa; eIF3p66; Eif3s7"
                     /inference="alignment:Splign:2.1.0"
     exon            1218..1348
                     /gene="Eif3d"
                     /gene_synonym="66/67kDa; eIF3p66; Eif3s7"
                     /inference="alignment:Splign:2.1.0"
     exon            1349..1434
                     /gene="Eif3d"
                     /gene_synonym="66/67kDa; eIF3p66; Eif3s7"
                     /inference="alignment:Splign:2.1.0"
     exon            1435..1564
                     /gene="Eif3d"
                     /gene_synonym="66/67kDa; eIF3p66; Eif3s7"
                     /inference="alignment:Splign:2.1.0"
     exon            1565..1707
                     /gene="Eif3d"
                     /gene_synonym="66/67kDa; eIF3p66; Eif3s7"
                     /inference="alignment:Splign:2.1.0"
     exon            1708..1991
                     /gene="Eif3d"
                     /gene_synonym="66/67kDa; eIF3p66; Eif3s7"
                     /inference="alignment:Splign:2.1.0"
     exon            1992..2113
                     /gene="Eif3d"
                     /gene_synonym="66/67kDa; eIF3p66; Eif3s7"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2088..2093
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Eif3d"
                     /gene_synonym="66/67kDa; eIF3p66; Eif3s7"
                     /note="hexamer: AATAAA"
     polyA_site      2113
                     /gene="Eif3d"
                     /gene_synonym="66/67kDa; eIF3p66; Eif3s7"
                     /note="major polyA site"
ORIGIN      
        1 gtttacggca ccggcccctg cgcgcgcatc ttccctcctg ccttgactcc tcggagtatc
       61 ccggcaatcg cagttttttc cccgggccat ctgtcgccat ccgggcccgt gaaggctttt
      121 gcaggtgagc ggcttgtttc gtgggaccct gcggacctcg cgagccagcc tgggctagac
      181 gtggcttcgg gagctcccgg aagagccttc ctttacgtcc tgtcgcctgt gcccctccgc
      241 tgggcggggc gggaattggc ccccggtggt cccaggcacg actcagaatg caggacaccg
      301 gaccttgtgt gtggatccct cgctcggcgc tctgctcagc gccgtggggt tttagaagat
      361 ggcgaagttc atgacacctg tgatccagga caacccctca ggctggggtc cctgtgccgt
      421 tcctgagcaa tttcgggata tgccctacca gccattcagc aaaggagatc ggctgggaaa
      481 ggttgcagac tggacagggg ccacatacca ggacaagagg tacacaaaca agtattcctc
      541 tcagttcggt gggggaagtc agtatgcata tttccatgag gaggatgaga caagcttcca
      601 gctggtggac acggcacgga cacagaagac cgcctaccag cggaaccgga tgagattcgc
      661 acagcgcaac ctccgcagag acaaagatcg gaggaacatg gtgcagttca acctacagac
      721 cctgcccaag agtgccaagc agaaagagag agaacgaatt cgcttgcaga aaaaattcca
      781 gaagcaattt ggagtgaggc aaaaatggga ccagaagtca cagaaacccc gagactcctc
      841 agttgaagtt cgcagtgact gggaggtgaa ggaggagatg gacttccctc agctgatgaa
      901 gatgcgctac ttggaagtgt cagagcctca agacatcgag tgctgcggag ccctggagta
      961 ctacgacaaa gcctttgacc gcatcaccac aaggagtgag aagcccctgc ggagcatcaa
     1021 gcgcatcttt cacaccgtca ccaccacaga cgaccctgtc atccggaagc tggcaaaaac
     1081 gcagggcaat gtgtttgcca ctgacgccat cctggccacg ctgatgagct gcacccgctc
     1141 cgtgtactcc tgggacatcg ttgtccagag agtcggctct aaactcttct ttgacaagag
     1201 ggacaactct gactttgacc tcctgactgt gagtgagaca gccaatgagc cgcctcaaga
     1261 tgaaggcaac tccttcaact caccccggaa cctggccatg gaagccacct acatcaacca
     1321 caacttctct cagcagtgcc tgagaatggg aagagaaaga tacaatttcc ccaacccaaa
     1381 cccatttgtg gaggacgaca tggataagaa tgagatcgcc tccgtcgctt accgttaccg
     1441 caggtggaag cttggagatg acatcgacct tatcgtccgc tgtgaacacg atggtgtcat
     1501 gaccggggcc aacggggaag tgtccttcat caacatcaag acgctcaatg aatgggactc
     1561 caggcattgt aatggcgttg actggcgtca gaagctggac tctcagcgtg gggctgtcat
     1621 cgccactgaa ttgaagaaca acagctacaa gttggcacgg tggacctgct gtgctttgct
     1681 ggctggatct gagtacctga agctcgggta tgtgtcccgg taccacgtaa aggactcctc
     1741 acgccatgtc atcctgggca cccagcagtt taagcccaat gagtttgcca gtcagatcaa
     1801 cctgagcgtg gagaatgcct ggggcatcct gcgctgcgtc atcgacatct gcatgaagct
     1861 ggaggagggc aagtacctca tcctcaagga ccccaacaag caggtcatcc gggtctacag
     1921 cctgcctgat ggcaccttca gctctgagga ggacgaagag gacgaggagg aggaagagga
     1981 ggaagaggaa gaggaagaaa cttaaatgag ttggcctggc gcctgcgtgt gttgcaccca
     2041 gctgtgcttg ggcagcgtgt gtccagctcc tgttctctag cagaggaaat aaaatttcat
     2101 tccctttggt ttc
//
