LOCUS       NM_001122662            1766 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus eukaryotic translation initiation factor 1A domain
            containing 3 (Eif1ad3), mRNA.
ACCESSION   NM_001122662 XM_001472050
VERSION     NM_001122662.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1766)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1766)
  AUTHORS   Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M,
            Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P,
            Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J,
            Mattick J, Hume DA, Lipovich L, Batalov S, Engstrom PG, Mizuno Y,
            Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z,
            Lenhard B and Wahlestedt C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   3  (bases 1 to 1766)
  AUTHORS   Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N,
            Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K,
            Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ,
            Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R,
            Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T,
            Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck
            DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di
            Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher
            CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming
            P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M,
            Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M,
            Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa
            Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A,
            Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L,
            Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L,
            Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K,
            Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R,
            Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V,
            Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed
            J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL,
            Sandelin A, Schneider C, Schonbach C, Sekiguchi K, Semple CA, Seno
            S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D,
            Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y,
            Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann
            SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi
            H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM,
            Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick
            JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama
            M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T,
            Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H,
            Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K,
            Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y,
            Suzuki H, Kawai J and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The transcriptional landscape of the mammalian genome
  JOURNAL   Science 309 (5740), 1559-1563 (2005)
   PUBMED   16141072
  REMARK    Erratum:[Science. 2006 Mar 24;311(5768):1713]
REFERENCE   4  (bases 1 to 1766)
  AUTHORS   Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido
            I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K,
            Tomaru Y, Hasegawa Y, Nogami A, Schonbach C, Gojobori T, Baldarelli
            R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A,
            Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V,
            Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF,
            Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik
            A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ,
            Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL,
            Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR,
            Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K,
            Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R,
            Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid
            J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou
            M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita
            M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C,
            Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z,
            Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N,
            Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K,
            Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A,
            Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A,
            Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M,
            Waterston R, Lander ES, Rogers J, Birney E and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
            & II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420 (6915), 563-573 (2002)
   PUBMED   12466851
REFERENCE   5  (bases 1 to 1766)
  AUTHORS   Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y,
            Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa
            K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T,
            Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K,
            Matsuda H, Ashburner M, Batalov S, Casavant T, Fleischmann W,
            Gaasterland T, Gissi C, King B, Kochiwa H, Kuehl P, Lewis S, Matsuo
            Y, Nikaido I, Pesole G, Quackenbush J, Schriml LM, Staubli F,
            Suzuki R, Tomita M, Wagner L, Washio T, Sakai K, Okido T, Furuno M,
            Aono H, Baldarelli R, Barsh G, Blake J, Boffelli D, Bojunga N,
            Carninci P, de Bonaldo MF, Brownstein MJ, Bult C, Fletcher C,
            Fujita M, Gariboldi M, Gustincich S, Hill D, Hofmann M, Hume DA,
            Kamiya M, Lee NH, Lyons P, Marchionni L, Mashima J, Mazzarelli J,
            Mombaerts P, Nordone P, Ring B, Ringwald M, Rodriguez I, Sakamoto
            N, Sasaki H, Sato K, Schonbach C, Seya T, Shibata Y, Storch KF,
            Suzuki H, Toyo-oka K, Wang KH, Weitz C, Whittaker C, Wilming L,
            Wynshaw-Boris A, Yoshida K, Hasegawa Y, Kawaji H, Kohtsuki S and
            Hayashizaki Y.
  CONSRTM   RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409 (6821), 685-690 (2001)
   PUBMED   11217851
REFERENCE   6  (bases 1 to 1766)
  AUTHORS   Shibata K, Itoh M, Aizawa K, Nagaoka S, Sasaki N, Carninci P, Konno
            H, Akiyama J, Nishi K, Kitsunai T, Tashiro H, Itoh M, Sumi N, Ishii
            Y, Nakamura S, Hazama M, Nishine T, Harada A, Yamamoto R, Matsumoto
            H, Sakaguchi S, Ikegami T, Kashiwagi K, Fujiwake S, Inoue K and
            Togawa Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system--384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res 10 (11), 1757-1771 (2000)
   PUBMED   11076861
REFERENCE   7  (bases 1 to 1766)
  AUTHORS   Carninci P, Shibata Y, Hayatsu N, Sugahara Y, Shibata K, Itoh M,
            Konno H, Okazaki Y, Muramatsu M and Hayashizaki Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res 10 (10), 1617-1630 (2000)
   PUBMED   11042159
REFERENCE   8  (bases 1 to 1766)
  AUTHORS   Carninci P and Hayashizaki Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Methods Enzymol 303, 19-44 (1999)
   PUBMED   10349636
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK163212.1.
            
            On Mar 14, 2008 this sequence version replaced XM_001472050.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK163212.1, BY725320.1 [ECO:0000332]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1766
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 42.02 cM"
     gene            1..1766
                     /gene="Eif1ad3"
                     /gene_synonym="100039042; Gm2016"
                     /note="eukaryotic translation initiation factor 1A domain
                     containing 3"
                     /db_xref="GeneID:100039042"
                     /db_xref="MGI:MGI:3780185"
     exon            1..191
                     /gene="Eif1ad3"
                     /gene_synonym="100039042; Gm2016"
                     /inference="alignment:Splign:2.1.0"
     exon            192..1766
                     /gene="Eif1ad3"
                     /gene_synonym="100039042; Gm2016"
                     /inference="alignment:Splign:2.1.0"
     CDS             492..926
                     /gene="Eif1ad3"
                     /gene_synonym="100039042; Gm2016"
                     /codon_start=1
                     /product="eukaryotic translation initiation factor 1A
                     domain containing 3"
                     /protein_id="NP_001116134.1"
                     /db_xref="CCDS:CCDS49128.1"
                     /db_xref="GeneID:100039042"
                     /db_xref="MGI:MGI:3780185"
                     /translation="MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGC
                     GRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNPDEARS
                     LKAYGELPEHAKINEMDTFGARDDDEIVFDDIGEDDEDIDDI"
     regulatory      1748..1753
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Eif1ad3"
                     /gene_synonym="100039042; Gm2016"
                     /note="putative"
     polyA_site      1766
                     /gene="Eif1ad3"
                     /gene_synonym="100039042; Gm2016"
                     /note="putative"
ORIGIN      
        1 gacagagtag tctcatcttg ctgccttcac tttgggagac ataggcaaga ggacatccga
       61 tctaggacaa tctgttctgt agaaagattt ccaggacagc ctcgtgtaca cagaaaaacc
      121 ctatcccaga aggaaacaat catcgttcta tcatctctta gtccttcgtc aaagaagatg
      181 gtactcacca ggtcaatgca ggaactacaa aagtaaagga gtcctgctgt attttgtcac
      241 tactagggag actacacctt cctgagcacc aggccagaag ccgaagtact attttgtaac
      301 tctcagaaga caggactctg gaacattttg tggtttgtgg atcttctata cttatatgag
      361 ttgctttcag atctaccact gttagatact tcctggtacc catcctaaga gtatagtagc
      421 tcttggaact gagtcacagc cactgtctgc caggagtccc tcacccgact cctgtggttg
      481 ccttttccat catgccaaag aataaaggca aaggaggcaa aaacaggcgc agaggtaaaa
      541 atgaaaatga atctgagaaa agagagttgg tgtttaaaga atatgggcaa gagtatgctc
      601 aggtgaccaa aatgctggga tgtggacggt tggaagcaat gtgttttgat ggtgtaagga
      661 ggctgtgcca cataagaggg aagttgagaa aaaaggtttg gataaatacc tcagacatta
      721 tattgattgg tctaagagac tatcaagata acaaagctga tgtaatctta aagtacaatc
      781 cagatgaagc aagaagtctg aaggcctatg gagaacttcc agaacatgcc aaaatcaatg
      841 aaatggacac atttggtgct agggatgatg atgaaatcgt gtttgatgat attggagagg
      901 atgatgaaga cattgatgat atctaacata atctaagcat gctatattcc aagttctctg
      961 aagattcctc aacacaattg gcatcttgac attcagctgt taagtaaaac ttcatttggc
     1021 ctgcgtttgt cttgttaatg caaactgatg acttttatgt tttgaagtat tatatttctt
     1081 tgaaaaccta agatgttgag ttatctaact taagtgacaa gttaacactt tgtgcttatg
     1141 ggtataattg aactcaggac acagcagtgt gcactgttaa gggactgcca tttcatttgt
     1201 gacctttcat ttctggccct ggttgtatac acttgtttga tcctttaagt tctttccacc
     1261 cataaattgt tgcatcttac attgcagttt aaagttagat cggtagcaat tttgagtttt
     1321 aaaaattagg aattgcagaa attcaatgct tagaggagat gataatttcc tgtgtttaca
     1381 aatataacag tggcaatgtt tagatagaat cctataaggc atactcaaaa aagaatgaaa
     1441 ataaacgaga gaagtcaatc tcttctgatt aatgcataga gacattttca aggcaggtta
     1501 aggctgttaa gagcacataa agtaatgttt actttgtaaa gtttgtgtta agccattgtc
     1561 aataagttac cttctgtatt gaggctttgg aaaatgaatt actgtgtatt gagtaaagtt
     1621 agttacataa ttgtacaagc aagctaagct ttcattaaac taagcttagg ttaatgtaaa
     1681 aggacccaca gcttaatgta aatgaggttc ctgttttctg aatggaggag tccagaaaca
     1741 gagacacatt aaaaatatgt tggtat
//
