LOCUS       NM_001159697            2754 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus EF hand and coiled-coil domain containing 1 (Efcc1),
            mRNA.
ACCESSION   NM_001159697 XM_001478848 XM_001479529
VERSION     NM_001159697.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2754)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC158626.6.
            
            On or before Apr 30, 2009 this sequence version replaced
            XM_001478848.1, XM_001479529.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.137037.1,
                                           ERR3363660.1689260.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-672               AC158626.6         131910-132581       c
            673-935             AC158626.6         130514-130776       c
            936-1081            AC158626.6         114173-114318       c
            1082-1220           AC158626.6         112688-112826       c
            1221-1362           AC158626.6         111545-111686       c
            1363-1500           AC158626.6         110265-110402       c
            1501-1564           AC158626.6         109646-109709       c
            1565-2754           AC158626.6         107538-108727       c
FEATURES             Location/Qualifiers
     source          1..2754
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 39.02 cM"
     gene            1..2754
                     /gene="Efcc1"
                     /gene_synonym="Ccdc48"
                     /note="EF hand and coiled-coil domain containing 1"
                     /db_xref="GeneID:58229"
                     /db_xref="MGI:MGI:3611451"
     exon            1..672
                     /gene="Efcc1"
                     /gene_synonym="Ccdc48"
                     /inference="alignment:Splign:2.1.0"
     CDS             25..1701
                     /gene="Efcc1"
                     /gene_synonym="Ccdc48"
                     /note="EF-hand domain-containing protein ENSP00000381169
                     homolog; coiled-coil domain-containing protein 48;
                     coiled-coil domain containing 48"
                     /codon_start=1
                     /product="EF-hand and coiled-coil domain-containing
                     protein 1"
                     /protein_id="NP_001153169.1"
                     /db_xref="CCDS:CCDS51840.1"
                     /db_xref="GeneID:58229"
                     /db_xref="MGI:MGI:3611451"
                     /translation="MESSAGDPYRRPARRTQWLLSALAHHYGLDRGVENEIVVLATGL
                     DQYLQEVFHHLDCRGAGRLPRADFRALCAVLGLNADGETATEDANSAEAASTNPAAGM
                     IAGGDADVREEARLALRADPPELTFRQFHARLCGYFSSRAGPRLPRGALSEHIETQIR
                     LRRPRRRRRPGSPSLHGGAYGERVAHLEEENSSLRELVEDLRAALQSSDARCLALQVG
                     LWKSQSDIPEAAAHELQRAQGALAEAEARARRLQRGQVEVRLRTEEARQAVRRSLHRV
                     RELEALARRVPCLQRQVQRLEAELRGYRSEGPQLLTPQQASPRPGNRNGEPTAGGTRD
                     SDTTPEGVQRSDSRDTDEEDEQLFRSVEGQAASEEEEEERWQEKPGRPQAHGEVPLVQ
                     PSGCVSRCDDQTAETLKASFGHCDGAEHICTLELETHVTRLGEQLQTLGTPEEEAELQ
                     QMVEAEHLRLELQMVETERVRLSLLEEKLVDVLQLLQRLRDLNISKRALGKMLLNALD
                     RNPSQEGTCGTLAILDTLHQALVGCELLQRNPSAPASTAPAHTNPFLISC"
     exon            673..935
                     /gene="Efcc1"
                     /gene_synonym="Ccdc48"
                     /inference="alignment:Splign:2.1.0"
     exon            936..1081
                     /gene="Efcc1"
                     /gene_synonym="Ccdc48"
                     /inference="alignment:Splign:2.1.0"
     exon            1082..1220
                     /gene="Efcc1"
                     /gene_synonym="Ccdc48"
                     /inference="alignment:Splign:2.1.0"
     exon            1221..1362
                     /gene="Efcc1"
                     /gene_synonym="Ccdc48"
                     /inference="alignment:Splign:2.1.0"
     exon            1363..1500
                     /gene="Efcc1"
                     /gene_synonym="Ccdc48"
                     /inference="alignment:Splign:2.1.0"
     exon            1501..1564
                     /gene="Efcc1"
                     /gene_synonym="Ccdc48"
                     /inference="alignment:Splign:2.1.0"
     exon            1565..2754
                     /gene="Efcc1"
                     /gene_synonym="Ccdc48"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagagaaacc gccagggttt gggcatggag agctcggcgg gtgacccata ccggcgacct
       61 gcgcggcgca ctcagtggct gctgagtgcc ttggctcacc actacgggct ggaccgcggc
      121 gtggagaatg agatcgtggt gctggctacc ggtctggatc agtatctgca ggaggttttc
      181 caccacttgg actgccgggg agcgggccgc ctaccgcgcg ccgacttccg tgcgctctgc
      241 gcggtactgg ggctgaacgc tgacggggag acggccacgg aggacgcaaa ctccgcggag
      301 gcggcctcca cgaacccggc tgctgggatg atcgctggcg gggacgcgga cgtcagggaa
      361 gaggcgcgcc tggctctgcg agccgaccct ccagagctca ccttccgcca gttccacgcg
      421 cgcctctgcg gctatttcag tagccgagcg gggccccggc tgccccgcgg agctcttagc
      481 gagcacatcg agacacagat ccgcctccgc cgcccgcgcc gccgccgccg gcctggctca
      541 ccgagcctgc acggtggcgc ctatggcgag cgggtggcac atctagagga ggaaaacagt
      601 agcctacgcg agctggtgga ggacctacgg gctgcgctgc agagcagtga cgcgcgttgc
      661 ctggcccttc aggtcggcct ctggaaaagc cagtcggaca tcccagaagc ggcggcgcac
      721 gagctgcagc gagcgcaggg cgcgctggca gaggcggagg cgcgcgcccg gcggctgcag
      781 cgcggacagg tggaggtgcg gctgcgcacc gaggaggctc ggcaggcggt gcgacgcagc
      841 ttgcaccgag tgcgggagct ggaggcgctg gcgcggcgtg tcccctgctt gcagcgccag
      901 gtgcagcgac tggaggcaga gcttagaggt tacaggtcgg aagggcctca gctcctaaca
      961 ccccaacaag ccagtccaag gccaggaaac aggaatggcg aacctactgc tggaggaacc
     1021 agagattcgg acactactcc agagggagtc cagcggtcag acagcagaga cacagatgaa
     1081 gaggatgagc agctgttccg ctccgtggaa ggccaggccg cctctgagga ggaagaggaa
     1141 gaaaggtggc aggaaaagcc agggcgccca caggcccatg gtgaggtacc cctggtgcaa
     1201 ccctcaggct gtgtgagtag gtgtgacgac cagacagctg agacgctcaa ggcttccttt
     1261 ggccactgtg atggtgctga gcacatctgc accctagagc tggaaaccca tgtcaccagg
     1321 cttggcgaac agctgcagac cctggggaca ccggaggagg aggcagaact acagcagatg
     1381 gtggaagctg agcatctgag gctagagctg cagatggtgg agacagagag ggtccggctg
     1441 tcgctgctgg aagaaaagct ggtggatgtg ctacaactcc tgcaaaggct ccgggacctg
     1501 aacatatcaa aaagagccct ggggaagatg ttgctgaatg ccctggaccg gaacccctca
     1561 caggagggta catgtggcac cttggccatc ctggacacct tgcaccaagc tttggttggc
     1621 tgtgagctcc tacagagaaa tccctcggca ccagcatcca cagctcctgc acacacgaac
     1681 cccttcctca tctcctgctg agctcgctgg ccaagtcttg ggccaccatg gtcattctcg
     1741 ccgtcatcag accagcctga ccacaaccag acaagctagc ctccatgatc aacctgacta
     1801 ccaatgggac tagcactagc catcgctgga ccagccacca tggttatcct gactaccagt
     1861 ccagcctcca tggtccgtgg ccactgctgg actgtcttcc accatctgaa cactctccac
     1921 aaatgatctg acacttgtca ttccctcaga actcaggcag ccaaggcttc ttccaaaact
     1981 gggtctggca gcgacccctt tcttgggcct ctcacattct ctcagagcct ccacattgaa
     2041 agcctgaagt tgctagatca gcctgaacct gaggctgtca tctcatcctg ggcacagcac
     2101 acagtacatt ccagaatctc tgcccgagag tcctgagatc tccacgcacc gccccccagc
     2161 gctgtcctct tccaccagca tgcctgctaa gtaaacccag gcccagcctc caggacacat
     2221 ctaatcactg gggaactccc cacctctgag gcagtgttgc aactaggaac agcagagtgt
     2281 tccaaggaga aaatgatgtc tgtaggcttg tgggtggaag ctgggctgtc acctcatcca
     2341 aaaggagagg tggaatgtaa gtaggcacag agagaaaagt tacaaccaga tcaaaggtgg
     2401 gatgctacca aggacccacc cccctcagga gtcagtgccc aaggccaggc accaaacagg
     2461 caggtctaaa gcagggggct gcctcctttt gatctttcct gctcagcctg agcccacaag
     2521 gccctgcttg ccccagccga ctgacctgtg ctatttggtc tgctcaagaa aggcctgata
     2581 agggctagtg agatggctca atgggtaaga gcacctgact gctcttccag actgctcttc
     2641 cgaaggtcca gagttcaaat cccagcaacc acatggtggc tcacaaccat cagtaacaag
     2701 atctgactcc ctcttctgga gtatctgaaa acagctacag tgtactttaa gaaa
//
